No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 |
| fragaria_vesca | FvH4_1g19880 |
| malus_domestica | MD01G1037900.v1.1 |
| prunus_persica | Prupe.6G196800_v2.0.a1 |
| pyrus_communis | pycom01g06590 |
| rosa_chinensis | RchiOBHm_Chr2g0111701 |
| rosa_laevigata | RLG00000017918 |
| rosa_multiflora | Rmu_sc0000448.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00132160 |
| rosa_rugosa | Rorug02G0175500 |
| rosa_samantha | Rh2AG228500 Rh2BG240800 Rh2CG231900 Rh2DG236500 |
| rosa_wichuraiana | Rw2G017650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 307 |
| Acc36I | ACCTGC | 3 cut(s) | 307, 1276, 1309 |
| Acc65I | GGTACC | 1 cut(s) | 502 |
| AccB1I | GGYRCC | 2 cut(s) | 502, 1285 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1162, 1903 |
| AccI | GTMKAC | 4 cut(s) | 148, 358, 1566, 1952 |
| AccII | CGCG | 1 cut(s) | 2662 |
| AciI | CCGC | 1 cut(s) | 1283 |
| AclWI | GGATC | 9 cut(s) | 618, 631, 1185, 1454, 1467, 1713, 1721, 2433, 2550 |
| AcoI | YGGCCR | 1 cut(s) | 2180 |
| AcsI | RAATTY | 7 cut(s) | 810, 920, 983, 1486, 1515, 1694, 2498 |
| AcuI | CTGAAG | 2 cut(s) | 114, 615 |
| AcvI | CACGTG | 1 cut(s) | 431 |
| AdeI | CACNNNGTG | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 375, 1162, 1274, 1295, 1649, 1903, 2131 |
| AflII | CTTAAG | 1 cut(s) | 860 |
| AflIII | ACRYGT | 1 cut(s) | 2575 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2522 |
| AjnI | CCWGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1567, 1599 |
| Alw21I | GWGCWC | 5 cut(s) | 127, 724, 1130, 1407, 1608 |
| Alw26I | GTCTC | 6 cut(s) | 1409, 1501, 1901, 2105, 2367, 2537 |
| Alw44I | GTGCAC | 2 cut(s) | 123, 1403 |
| AlwI | GGATC | 9 cut(s) | 618, 631, 1185, 1454, 1467, 1713, 1721, 2433, 2550 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 176, 884, 2559 |
| Ama87I | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| AoxI | GGCC | 2 cut(s) | 2180, 2569 |
| ApaLI | GTGCAC | 2 cut(s) | 123, 1403 |
| ApeKI | GCWGC | 9 cut(s) | 221, 306, 887, 911, 1382, 1437, 2345, 2413, 2708 |
| ApoI | RAATTY | 7 cut(s) | 810, 920, 983, 1486, 1515, 1694, 2498 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 887, 919 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1761 |
| Asp718I | GGTACC | 1 cut(s) | 502 |
| AspLEI | GCGC | 1 cut(s) | 2662 |
| AspS9I | GGNCC | 3 cut(s) | 378, 1298, 2398 |
| AsuHPI | GGTGA | 4 cut(s) | 582, 674, 764, 1650 |
| AsuII | TTCGAA | 1 cut(s) | 1789 |
| AvaI | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| AvaII | GGWCC | 3 cut(s) | 378, 1298, 2398 |
| BaeGI | GKGCMC | 3 cut(s) | 127, 436, 1407 |
| BamHI | GGATCC | 2 cut(s) | 623, 1459 |
| BanI | GGYRCC | 2 cut(s) | 502, 1285 |
| BanII | GRGCYC | 2 cut(s) | 724, 1608 |
| BbrPI | CACGTG | 1 cut(s) | 431 |
| BbsI | GAAGAC | 3 cut(s) | 189, 895, 1074 |
| Bbv12I | GWGCWC | 5 cut(s) | 127, 724, 1130, 1407, 1608 |
| BbvI | GCAGC | 9 cut(s) | 208, 293, 898, 899, 1369, 1449, 2357, 2425, 2695 |
| BccI | CCATC | 7 cut(s) | 547, 759, 950, 1297, 1733, 1897, 2225 |
| BceAI | ACGGC | 2 cut(s) | 1225, 2673 |
| BciT130I | CCWGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| BciVI | GTATCC | 1 cut(s) | 2228 |
| BclI | TGATCA | 1 cut(s) | 2698 |
| BcoDI | GTCTC | 6 cut(s) | 1409, 1501, 1901, 2105, 2367, 2537 |
| BfaI | CTAG | 5 cut(s) | 480, 788, 1826, 2069, 2334 |
| BfmI | CTRYAG | 6 cut(s) | 149, 307, 885, 1363, 1609, 1731 |
| BfrI | CTTAAG | 1 cut(s) | 860 |
| BfuAI | ACCTGC | 3 cut(s) | 307, 1276, 1309 |
| BfuI | GTATCC | 1 cut(s) | 2228 |
| BmcAI | AGTACT | 3 cut(s) | 526, 830, 2458 |
| Bme1390I | CCNGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| Bme18I | GGWCC | 3 cut(s) | 378, 1298, 2398 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2522 |
| BmeT110I | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| BmgT120I | GGNCC | 3 cut(s) | 378, 1298, 2398 |
| BmiI | GGNNCC | 7 cut(s) | 504, 625, 871, 1287, 1299, 1461, 2611 |
| BmrFI | CCNGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| BmsI | GCATC | 7 cut(s) | 505, 592, 998, 1542, 1731, 2202, 2695 |
| BpiI | GAAGAC | 3 cut(s) | 189, 895, 1074 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2238, 2270 |
| BpmI | CTGGAG | 2 cut(s) | 1632, 1647 |
| Bpu14I | TTCGAA | 1 cut(s) | 1789 |
| BpuEI | CTTGAG | 4 cut(s) | 131, 193, 595, 708 |
| Bsa29I | ATCGAT | 1 cut(s) | 1725 |
| BsaAI | YACGTR | 2 cut(s) | 431, 2576 |
| BsaBI | GATNNNNATC | 1 cut(s) | 849 |
| BsaI | GGTCTC | 1 cut(s) | 1501 |
| BsaJI | CCNNGG | 5 cut(s) | 392, 658, 1344, 2130, 2241 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 375, 1162, 1274, 1295, 1649, 1903, 2131 |
| Bse1I | ACTGG | 6 cut(s) | 381, 1272, 1463, 1664, 1844, 2097 |
| Bse3DI | GCAATG | 1 cut(s) | 1447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 849 |
| BseBI | CCWGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| BseCI | ATCGAT | 1 cut(s) | 1725 |
| BseDI | CCNNGG | 5 cut(s) | 392, 658, 1344, 2130, 2241 |
| BseJI | GATNNNNATC | 1 cut(s) | 849 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 375, 1162, 1274, 1295, 1649, 1903, 2131 |
| BseMI | GCAATG | 1 cut(s) | 1447 |
| BseMII | CTCAG | 2 cut(s) | 2045, 2467 |
| BseNI | ACTGG | 6 cut(s) | 381, 1272, 1463, 1664, 1844, 2097 |
| BseRI | GAGGAG | 2 cut(s) | 1635, 2563 |
| BseSI | GKGCMC | 3 cut(s) | 127, 436, 1407 |
| BseXI | GCAGC | 9 cut(s) | 208, 293, 898, 899, 1369, 1449, 2357, 2425, 2695 |
| BseYI | CCCAGC | 1 cut(s) | 2125 |
| BsgI | GTGCAG | 1 cut(s) | 2650 |
| Bsh1236I | CGCG | 1 cut(s) | 2662 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1065, 2223 |
| BshFI | GGCC | 2 cut(s) | 2182, 2571 |
| BshNI | GGYRCC | 2 cut(s) | 502, 1285 |
| BshVI | ATCGAT | 1 cut(s) | 1725 |
| BsiEI | CGRYCG | 2 cut(s) | 1065, 2223 |
| BsiHKAI | GWGCWC | 5 cut(s) | 127, 724, 1130, 1407, 1608 |
| BsiHKCI | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| BslFI | GGGAC | 4 cut(s) | 1311, 1326, 2108, 2519 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 375, 1162, 1274, 1295, 1649, 1903, 2131 |
| BsmAI | GTCTC | 6 cut(s) | 1409, 1501, 1901, 2105, 2367, 2537 |
| BsmBI | CGTCTC | 2 cut(s) | 1901, 2537 |
| BsmFI | GGGAC | 4 cut(s) | 1311, 1326, 2108, 2519 |
| BsmI | GAATGC | 5 cut(s) | 618, 1304, 1975, 2335, 2415 |
| BsnI | GGCC | 2 cut(s) | 2182, 2571 |
| Bso31I | GGTCTC | 1 cut(s) | 1501 |
| BsoBI | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| Bsp119I | TTCGAA | 1 cut(s) | 1789 |
| Bsp1286I | GDGCHC | 6 cut(s) | 127, 436, 724, 1130, 1407, 1608 |
| Bsp1407I | TGTACA | 1 cut(s) | 472 |
| BspACI | CCGC | 1 cut(s) | 1283 |
| BspANI | GGCC | 2 cut(s) | 2182, 2571 |
| BspCNI | CTCAG | 2 cut(s) | 2046, 2466 |
| BspDI | ATCGAT | 1 cut(s) | 1725 |
| BspFNI | CGCG | 1 cut(s) | 2662 |
| BspHI | TCATGA | 1 cut(s) | 2701 |
| BspLI | GGNNCC | 7 cut(s) | 504, 625, 871, 1287, 1299, 1461, 2611 |
| BspMAI | CTGCAG | 4 cut(s) | 311, 889, 1367, 1613 |
| BspMI | ACCTGC | 3 cut(s) | 307, 1276, 1309 |
| BspPI | GGATC | 9 cut(s) | 618, 631, 1185, 1454, 1467, 1713, 1721, 2433, 2550 |
| BspT104I | TTCGAA | 1 cut(s) | 1789 |
| BspT107I | GGYRCC | 2 cut(s) | 502, 1285 |
| BspTI | CTTAAG | 1 cut(s) | 860 |
| BspTNI | GGTCTC | 1 cut(s) | 1501 |
| BsrDI | GCAATG | 1 cut(s) | 1447 |
| BsrGI | TGTACA | 1 cut(s) | 472 |
| BsrI | ACTGG | 6 cut(s) | 381, 1272, 1463, 1664, 1844, 2097 |
| BssECI | CCNNGG | 5 cut(s) | 392, 658, 1344, 2130, 2241 |
| BssNAI | GTATAC | 1 cut(s) | 1953 |
| BssT1I | CCWWGG | 1 cut(s) | 658 |
| Bst1107I | GTATAC | 1 cut(s) | 1953 |
| Bst2UI | CCWGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| Bst4CI | ACNGT | 5 cut(s) | 129, 1073, 2461, 2476, 2628 |
| Bst6I | CTCTTC | 2 cut(s) | 591, 1385 |
| BstAFI | CTTAAG | 1 cut(s) | 860 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 884, 2330 |
| BstAUI | TGTACA | 1 cut(s) | 472 |
| BstBAI | YACGTR | 2 cut(s) | 431, 2576 |
| BstBI | TTCGAA | 1 cut(s) | 1789 |
| BstC8I | GCNNGC | 5 cut(s) | 304, 1164, 1623, 2165, 2322 |
| BstDEI | CTNAG | 6 cut(s) | 1139, 1433, 2054, 2196, 2276, 2453 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1647 |
| BstFNI | CGCG | 1 cut(s) | 2662 |
| BstHHI | GCGC | 1 cut(s) | 2662 |
| BstMAI | GTCTC | 6 cut(s) | 1409, 1501, 1901, 2105, 2367, 2537 |
| BstMCI | CGRYCG | 2 cut(s) | 1065, 2223 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 884, 2330 |
| BstNI | CCWGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| BstNSI | RCATGY | 4 cut(s) | 51, 1162, 1641, 2167 |
| BstSCI | CCNGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| BstSFI | CTRYAG | 6 cut(s) | 149, 307, 885, 1363, 1609, 1731 |
| BstSLI | GKGCMC | 3 cut(s) | 127, 436, 1407 |
| BstUI | CGCG | 1 cut(s) | 2662 |
| BstV1I | GCAGC | 9 cut(s) | 208, 293, 898, 899, 1369, 1449, 2357, 2425, 2695 |
| BstV2I | GAAGAC | 3 cut(s) | 189, 895, 1074 |
| BstX2I | RGATCY | 5 cut(s) | 623, 1459, 1705, 2425, 2555 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1279 |
| BstYI | RGATCY | 5 cut(s) | 623, 1459, 1705, 2425, 2555 |
| BstZ17I | GTATAC | 1 cut(s) | 1953 |
| Bsu15I | ATCGAT | 1 cut(s) | 1725 |
| BsuI | GTATCC | 1 cut(s) | 2228 |
| BsuRI | GGCC | 2 cut(s) | 2182, 2571 |
| BsuTUI | ATCGAT | 1 cut(s) | 1725 |
| BtsIMutI | CAGTG | 3 cut(s) | 90, 125, 1279 |
| BveI | ACCTGC | 3 cut(s) | 307, 1276, 1309 |
| Cac8I | GCNNGC | 5 cut(s) | 304, 1164, 1623, 2165, 2322 |
| CaiI | CAGNNNCTG | 3 cut(s) | 176, 884, 2559 |
| CciI | TCATGA | 1 cut(s) | 2701 |
| CfoI | GCGC | 1 cut(s) | 2662 |
| Cfr13I | GGNCC | 3 cut(s) | 378, 1298, 2398 |
| ClaI | ATCGAT | 1 cut(s) | 1725 |
| CseI | GACGC | 2 cut(s) | 1918, 2519 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2367, 2402 |
| DdeI | CTNAG | 6 cut(s) | 1139, 1433, 2054, 2196, 2276, 2453 |
| DraIII | CACNNNGTG | 1 cut(s) | 431 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2522 |
| EaeI | YGGCCR | 1 cut(s) | 2180 |
| Eam1104I | CTCTTC | 2 cut(s) | 591, 1385 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2522 |
| EarI | CTCTTC | 2 cut(s) | 591, 1385 |
| Ecl136II | GAGCTC | 2 cut(s) | 722, 1606 |
| Eco130I | CCWWGG | 1 cut(s) | 658 |
| Eco147I | AGGCCT | 1 cut(s) | 2571 |
| Eco24I | GRGCYC | 2 cut(s) | 724, 1608 |
| Eco31I | GGTCTC | 1 cut(s) | 1501 |
| Eco47I | GGWCC | 3 cut(s) | 378, 1298, 2398 |
| Eco53kI | GAGCTC | 2 cut(s) | 722, 1606 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 615 |
| Eco72I | CACGTG | 1 cut(s) | 431 |
| Eco88I | CYCGRG | 3 cut(s) | 717, 1343, 1498 |
| EcoICRI | GAGCTC | 2 cut(s) | 722, 1606 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1647 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1298 |
| EcoRI | GAATTC | 2 cut(s) | 810, 1486 |
| EcoRII | CCWGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| EcoT14I | CCWWGG | 1 cut(s) | 658 |
| EcoT22I | ATGCAT | 1 cut(s) | 73 |
| EcoT38I | GRGCYC | 2 cut(s) | 724, 1608 |
| ErhI | CCWWGG | 1 cut(s) | 658 |
| Esp3I | CGTCTC | 2 cut(s) | 1901, 2537 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 4 cut(s) | 1311, 1326, 2108, 2519 |
| FauNDI | CATATG | 1 cut(s) | 892 |
| FbaI | TGATCA | 1 cut(s) | 2698 |
| FblI | GTMKAC | 4 cut(s) | 148, 358, 1566, 1952 |
| FriOI | GRGCYC | 2 cut(s) | 724, 1608 |
| FspBI | CTAG | 5 cut(s) | 480, 788, 1826, 2069, 2334 |
| GlaI | GCGC | 1 cut(s) | 2661 |
| GsaI | CCCAGC | 1 cut(s) | 2129 |
| GsuI | CTGGAG | 2 cut(s) | 1632, 1647 |
| HaeIII | GGCC | 2 cut(s) | 2182, 2571 |
| HgaI | GACGC | 2 cut(s) | 1918, 2519 |
| HhaI | GCGC | 1 cut(s) | 2662 |
| Hin6I | GCGC | 1 cut(s) | 2660 |
| HinP1I | GCGC | 1 cut(s) | 2660 |
| HindIII | AAGCTT | 2 cut(s) | 943, 2318 |
| HphI | GGTGA | 4 cut(s) | 582, 674, 764, 1650 |
| Hpy166II | GTNNAC | 8 cut(s) | 100, 125, 149, 359, 1186, 1405, 1567, 1953 |
| Hpy8I | GTNNAC | 8 cut(s) | 100, 125, 149, 359, 1186, 1405, 1567, 1953 |
| Hpy99I | CGWCG | 1 cut(s) | 2304 |
| HpyAV | CCTTC | 8 cut(s) | 74, 460, 1111, 1331, 1450, 1580, 1984, 2226 |
| HpyCH4III | ACNGT | 5 cut(s) | 129, 1073, 2461, 2476, 2628 |
| HpyCH4IV | ACGT | 3 cut(s) | 430, 490, 2575 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 884, 2330 |
| HpyF3I | CTNAG | 6 cut(s) | 1139, 1433, 2054, 2196, 2276, 2453 |
| HpySE526I | ACGT | 3 cut(s) | 430, 490, 2575 |
| HspAI | GCGC | 1 cut(s) | 2660 |
| KpnI | GGTACC | 1 cut(s) | 506 |
| Ksp22I | TGATCA | 1 cut(s) | 2698 |
| LmnI | GCTCC | 7 cut(s) | 10, 229, 875, 1719, 1917, 2550, 2615 |
| Lsp1109I | GCAGC | 9 cut(s) | 208, 293, 898, 899, 1369, 1449, 2357, 2425, 2695 |
| LweI | GCATC | 7 cut(s) | 505, 592, 998, 1542, 1731, 2202, 2695 |
| MaeI | CTAG | 5 cut(s) | 480, 788, 1826, 2069, 2334 |
| MaeII | ACGT | 3 cut(s) | 430, 490, 2575 |
| MaeIII | GTNAC | 4 cut(s) | 752, 759, 1221, 1465 |
| MfeI | CAATTG | 2 cut(s) | 351, 2307 |
| MflI | RGATCY | 5 cut(s) | 623, 1459, 1705, 2425, 2555 |
| MhlI | GDGCHC | 6 cut(s) | 127, 436, 724, 1130, 1407, 1608 |
| MlyI | GAGTC | 5 cut(s) | 341, 1348, 2213, 2346, 2369 |
| Mph1103I | ATGCAT | 1 cut(s) | 73 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1761 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1920, 2256 |
| MspA1I | CMGCKG | 3 cut(s) | 221, 306, 1900 |
| MspCI | CTTAAG | 1 cut(s) | 860 |
| MspR9I | CCNGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| MunI | CAATTG | 2 cut(s) | 351, 2307 |
| Mva1269I | GAATGC | 5 cut(s) | 618, 1304, 1975, 2335, 2415 |
| MvaI | CCWGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| MvnI | CGCG | 1 cut(s) | 2662 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 884, 2330 |
| NdeI | CATATG | 1 cut(s) | 892 |
| NlaIV | GGNNCC | 7 cut(s) | 504, 625, 871, 1287, 1299, 1461, 2611 |
| NmeAIII | GCCGAG | 1 cut(s) | 2155 |
| NmuCI | GTSAC | 3 cut(s) | 752, 1221, 1465 |
| NsiI | ATGCAT | 1 cut(s) | 73 |
| NspI | RCATGY | 4 cut(s) | 51, 1162, 1641, 2167 |
| NspV | TTCGAA | 1 cut(s) | 1789 |
| PaeI | GCATGC | 1 cut(s) | 2167 |
| PaeR7I | CTCGAG | 1 cut(s) | 1498 |
| PagI | TCATGA | 1 cut(s) | 2701 |
| PaqCI | CACCTGC | 1 cut(s) | 307 |
| PceI | AGGCCT | 1 cut(s) | 2571 |
| PctI | GAATGC | 5 cut(s) | 618, 1304, 1975, 2335, 2415 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1761 |
| PfeI | GAWTC | 6 cut(s) | 215, 689, 1192, 1235, 1786, 2390 |
| PflFI | GACNNNGTC | 1 cut(s) | 899 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1162, 1903 |
| PfoI | TCCNGGA | 1 cut(s) | 2592 |
| Ple19I | CGATCG | 1 cut(s) | 2223 |
| PleI | GAGTC | 5 cut(s) | 341, 1347, 2212, 2345, 2369 |
| PmaCI | CACGTG | 1 cut(s) | 431 |
| PmlI | CACGTG | 1 cut(s) | 431 |
| PpsI | GAGTC | 5 cut(s) | 341, 1347, 2212, 2345, 2369 |
| Ppu21I | YACGTR | 2 cut(s) | 431, 2576 |
| PpuMI | RGGWCCY | 1 cut(s) | 1298 |
| Psp124BI | GAGCTC | 2 cut(s) | 724, 1608 |
| Psp5II | RGGWCCY | 1 cut(s) | 1298 |
| Psp6I | CCWGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| PspCI | CACGTG | 1 cut(s) | 431 |
| PspFI | CCCAGC | 1 cut(s) | 2125 |
| PspGI | CCWGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| PspN4I | GGNNCC | 7 cut(s) | 504, 625, 871, 1287, 1299, 1461, 2611 |
| PspPI | GGNCC | 3 cut(s) | 378, 1298, 2398 |
| PspPPI | RGGWCCY | 1 cut(s) | 1298 |
| PstI | CTGCAG | 4 cut(s) | 311, 889, 1367, 1613 |
| PstNI | CAGNNNCTG | 3 cut(s) | 176, 884, 2559 |
| PsuI | RGATCY | 5 cut(s) | 623, 1459, 1705, 2425, 2555 |
| PsyI | GACNNNGTC | 1 cut(s) | 899 |
| PvuI | CGATCG | 1 cut(s) | 2223 |
| PvuII | CAGCTG | 3 cut(s) | 221, 306, 1900 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1920, 2256 |
| SacI | GAGCTC | 2 cut(s) | 724, 1608 |
| Sau96I | GGNCC | 3 cut(s) | 378, 1298, 2398 |
| ScaI | AGTACT | 3 cut(s) | 526, 830, 2458 |
| SchI | GAGTC | 5 cut(s) | 341, 1348, 2213, 2346, 2369 |
| ScrFI | CCNGG | 9 cut(s) | 394, 621, 750, 1650, 2242, 2342, 2495, 2560, 2594 |
| SduI | GDGCHC | 6 cut(s) | 127, 436, 724, 1130, 1407, 1608 |
| SfaNI | GCATC | 7 cut(s) | 505, 592, 998, 1542, 1731, 2202, 2695 |
| SfcI | CTRYAG | 6 cut(s) | 149, 307, 885, 1363, 1609, 1731 |
| Sfr274I | CTCGAG | 1 cut(s) | 1498 |
| SfuI | TTCGAA | 1 cut(s) | 1789 |
| SinI | GGWCC | 3 cut(s) | 378, 1298, 2398 |
| SlaI | CTCGAG | 1 cut(s) | 1498 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1920, 2256 |
| SmlI | CTYRAG | 6 cut(s) | 110, 208, 574, 723, 860, 1498 |
| SmoI | CTYRAG | 6 cut(s) | 110, 208, 574, 723, 860, 1498 |
| SphI | GCATGC | 1 cut(s) | 2167 |
| SseBI | AGGCCT | 1 cut(s) | 2571 |
| SsiI | CCGC | 1 cut(s) | 1283 |
| SspI | AATATT | 1 cut(s) | 1579 |
| SspMI | CTAG | 5 cut(s) | 480, 788, 1826, 2069, 2334 |
| SstI | GAGCTC | 2 cut(s) | 724, 1608 |
| StuI | AGGCCT | 1 cut(s) | 2571 |
| StyD4I | CCNGG | 9 cut(s) | 392, 619, 748, 1648, 2240, 2340, 2493, 2558, 2592 |
| StyI | CCWWGG | 1 cut(s) | 658 |
| TaaI | ACNGT | 5 cut(s) | 129, 1073, 2461, 2476, 2628 |
| TaiI | ACGT | 3 cut(s) | 433, 493, 2578 |
| TaqI | TCGA | 6 cut(s) | 1209, 1499, 1725, 1737, 1789, 2219 |
| TaqII | GACCGA | 1 cut(s) | 1079 |
| TatI | WGTACW | 8 cut(s) | 472, 524, 828, 1084, 1802, 2269, 2456, 2683 |
| TauI | GCSGC | 1 cut(s) | 1286 |
| TfiI | GAWTC | 6 cut(s) | 215, 689, 1192, 1235, 1786, 2390 |
| TscAI | CASTG | 3 cut(s) | 97, 132, 1279 |
| TseFI | GTSAC | 3 cut(s) | 752, 1221, 1465 |
| TseI | GCWGC | 9 cut(s) | 221, 306, 887, 911, 1382, 1437, 2345, 2413, 2708 |
| Tsp45I | GTSAC | 3 cut(s) | 752, 1221, 1465 |
| TspGWI | ACGGA | 2 cut(s) | 443, 862 |
| TspRI | CASTG | 3 cut(s) | 97, 132, 1279 |
| Tth111I | GACNNNGTC | 1 cut(s) | 899 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1162, 1903 |
| Vha464I | CTTAAG | 1 cut(s) | 860 |
| VneI | GTGCAC | 2 cut(s) | 123, 1403 |
| VpaK11BI | GGWCC | 3 cut(s) | 378, 1298, 2398 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1647 |
| XapI | RAATTY | 7 cut(s) | 810, 920, 983, 1486, 1515, 1694, 2498 |
| XbaI | TCTAGA | 1 cut(s) | 787 |
| XceI | RCATGY | 4 cut(s) | 51, 1162, 1641, 2167 |
| XhoI | CTCGAG | 1 cut(s) | 1498 |
| XmiI | GTMKAC | 4 cut(s) | 148, 358, 1566, 1952 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1761 |
| XspI | CTAG | 5 cut(s) | 480, 788, 1826, 2069, 2334 |
| ZrmI | AGTACT | 3 cut(s) | 526, 830, 2458 |
| Zsp2I | ATGCAT | 1 cut(s) | 73 |