Rorug02G0175500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008390
Physical Location & Seq
Forward (+)
16146009 .. 16146374
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0175500.1

Sequence Viewer

Length: 366 bp
ATGGCCTCCATTGATGCTATCACTGCTAGCTGTGCTGCCTCCCTTGCGTTTTCAGAGGAAGGTAGAGCTCCTGATCTGGGGAGAATTGGTGGCGGCCCTGTTCGTCGATCTTCCAAATCTTTTCTGATTGGGAAGCCTTTGACCTGCCGACCGGTCAACCCTACGACCTTCAAGGCTCACCTCCTTTGTACATGGATGGATGTCACTCTGGTGATGTGGAAGAATAAGTCTGGCAAGCTACCTGGGAGTAGGAACAAGAATCATTGCCCTAGCAAGAAGCCGAATGTCGCTGCTTTACGACTCTCTTACCGTGCAGTTACTGGTATTGATCCCAGCCCTAGCAACAAGGGCAAGGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.89

Weight (kDa)

10.35

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008390)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440
fragaria_vesca FvH4_1g19880
malus_domestica MD01G1037900.v1.1
prunus_persica Prupe.6G196800_v2.0.a1
pyrus_communis pycom01g06590
rosa_chinensis RchiOBHm_Chr2g0111701
rosa_laevigata RLG00000017918
rosa_multiflora Rmu_sc0000448.1_g000012
rosa_roxburghii Rroxscaffold_2G00132160
rosa_rugosa Rorug02G0175500
rosa_samantha Rh2AG228500 Rh2BG240800 Rh2CG231900 Rh2DG236500
rosa_wichuraiana Rw2G017650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 323
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 241
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 4 cut(s) 30, 68, 238, 361
AluI AGCT 4 cut(s) 30, 68, 238, 361
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 2 cut(s) 3, 94
ApeKI GCWGC 2 cut(s) 35, 290
AsiGI ACCGGT 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 170, 223
AsuNHI GCTAGC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 22, 277
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 243
BfaI CTAG 3 cut(s) 27, 270, 339
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 36, 94, 291
BlsI GCNGC 3 cut(s) 37, 95, 292
Bme1390I CCNGG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 201, 205
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 22, 277
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 5, 96
BshTI ACCGGT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 2 cut(s) 5, 96
Bsp1286I GDGCHC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 3 cut(s) 73, 107, 328
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 5, 96
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 188
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 73, 107, 328
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 28, 236
BstF5I GGATG 2 cut(s) 201, 205
BstKTI GATC 3 cut(s) 76, 110, 331
BstMBI GATC 3 cut(s) 73, 107, 328
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 348
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 22, 277
BsuRI GGCC 2 cut(s) 5, 96
BtsCI GGATG 2 cut(s) 201, 205
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 28, 236
CaiI CAGNNNCTG 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 1 cut(s) 192
CviQI GTAC 1 cut(s) 189
DpnI GATC 3 cut(s) 75, 109, 330
DpnII GATC 3 cut(s) 73, 107, 328
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 195
FaiI YATR 1 cut(s) 193
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 36, 94, 291
FokI GGATG 2 cut(s) 208, 212
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 36, 94, 291
FspBI CTAG 3 cut(s) 27, 270, 339
GluI GCNGC 3 cut(s) 36, 94, 291
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 2 cut(s) 5, 96
HapII CCGG 1 cut(s) 152
Hin1II CATG 1 cut(s) 195
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 259, 300
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 170, 223
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 55, 126
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 53, 178
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 348
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 3 cut(s) 73, 107, 328
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 2 cut(s) 22, 277
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 270, 339
MaeIII GTNAC 2 cut(s) 202, 316
MalI GATC 3 cut(s) 75, 109, 330
MboI GATC 3 cut(s) 73, 107, 328
MboII GAAGA 2 cut(s) 102, 232
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 4 cut(s) 16, 49, 49, 191
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 348
NdeII GATC 3 cut(s) 73, 107, 328
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 209
PfeI GAWTC 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 3 cut(s) 37, 95, 292
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 241
PspPI GGNCC 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 70
SatI GCNGC 3 cut(s) 36, 94, 291
Sau3AI GATC 3 cut(s) 73, 107, 328
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 70
SetI ASST 9 cut(s) 32, 64, 70, 146, 170, 183, 240, 244, 363
SfaNI GCATC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 93
SspMI CTAG 3 cut(s) 27, 270, 339
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 106
TasI AATT 1 cut(s) 84
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 259
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 35, 290
Tsp45I GTSAC 1 cut(s) 202
TspRI CASTG 1 cut(s) 28
XspI CTAG 3 cut(s) 27, 270, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.