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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 |
| fragaria_vesca | FvH4_1g19880 |
| malus_domestica | MD01G1037900.v1.1 |
| prunus_persica | Prupe.6G196800_v2.0.a1 |
| pyrus_communis | pycom01g06590 |
| rosa_chinensis | RchiOBHm_Chr2g0111701 |
| rosa_laevigata | RLG00000017918 |
| rosa_multiflora | Rmu_sc0000448.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00132160 |
| rosa_rugosa | Rorug02G0175500 |
| rosa_samantha | Rh2AG228500 Rh2BG240800 Rh2CG231900 Rh2DG236500 |
| rosa_wichuraiana | Rw2G017650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1666, 1699 |
| Acc65I | GGTACC | 1 cut(s) | 991 |
| AccB1I | GGYRCC | 2 cut(s) | 991, 1675 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 281, 1552, 2293 |
| AccI | GTMKAC | 4 cut(s) | 637, 847, 1956, 2342 |
| AciI | CCGC | 3 cut(s) | 1382, 1673, 2159 |
| AclI | AACGTT | 1 cut(s) | 1989 |
| AclWI | GGATC | 6 cut(s) | 1113, 1126, 1575, 1844, 1857, 2111 |
| AcsI | RAATTY | 7 cut(s) | 98, 396, 413, 1305, 1876, 1905, 2084 |
| AcuI | CTGAAG | 2 cut(s) | 603, 1110 |
| AcvI | CACGTG | 1 cut(s) | 920 |
| AdeI | CACNNNGTG | 1 cut(s) | 920 |
| AfaI | GTAC | 7 cut(s) | 376, 508, 963, 993, 1021, 1476, 2194 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 281, 864, 1552, 1664, 1685, 2039, 2126, 2293, 2521 |
| AflII | CTTAAG | 1 cut(s) | 1355 |
| AflIII | ACRYGT | 1 cut(s) | 256 |
| AhlI | ACTAGT | 1 cut(s) | 332 |
| AjnI | CCWGG | 5 cut(s) | 881, 1114, 1243, 1734, 2038 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1957, 1989 |
| Alw21I | GWGCWC | 7 cut(s) | 217, 289, 616, 1219, 1520, 1797, 1998 |
| Alw26I | GTCTC | 4 cut(s) | 1799, 1891, 2291, 2495 |
| Alw44I | GTGCAC | 3 cut(s) | 285, 612, 1793 |
| AlwI | GGATC | 6 cut(s) | 1113, 1126, 1575, 1844, 1857, 2111 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 665, 1379 |
| Ama87I | CYCGRG | 2 cut(s) | 1212, 1888 |
| ApaLI | GTGCAC | 3 cut(s) | 285, 612, 1793 |
| ApeKI | GCWGC | 4 cut(s) | 5, 710, 795, 1772 |
| ApoI | RAATTY | 7 cut(s) | 98, 396, 413, 1305, 1876, 1905, 2084 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1382, 1414 |
| AseI | ATTAAT | 1 cut(s) | 249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2151 |
| Asp718I | GGTACC | 1 cut(s) | 991 |
| AspS9I | GGNCC | 3 cut(s) | 272, 867, 1688 |
| AsuC2I | CCSGG | 1 cut(s) | 997 |
| AsuII | TTCGAA | 1 cut(s) | 2179 |
| AvaI | CYCGRG | 2 cut(s) | 1212, 1888 |
| AvaII | GGWCC | 3 cut(s) | 272, 867, 1688 |
| BaeGI | GKGCMC | 4 cut(s) | 289, 616, 925, 1797 |
| BamHI | GGATCC | 2 cut(s) | 1118, 1849 |
| BanI | GGYRCC | 2 cut(s) | 991, 1675 |
| BanII | GRGCYC | 2 cut(s) | 1219, 1998 |
| BbrPI | CACGTG | 1 cut(s) | 920 |
| BbsI | GAAGAC | 3 cut(s) | 678, 1390, 1464 |
| Bbv12I | GWGCWC | 7 cut(s) | 217, 289, 616, 1219, 1520, 1797, 1998 |
| BbvI | GCAGC | 3 cut(s) | 697, 782, 1759 |
| BccI | CCATC | 5 cut(s) | 38, 1042, 1254, 1687, 2287 |
| BciT130I | CCWGG | 5 cut(s) | 883, 1116, 1245, 1736, 2040 |
| BcnI | CCSGG | 1 cut(s) | 997 |
| BcoDI | GTCTC | 4 cut(s) | 1799, 1891, 2291, 2495 |
| BcuI | ACTAGT | 1 cut(s) | 332 |
| BfaI | CTAG | 6 cut(s) | 210, 333, 969, 1283, 2216, 2459 |
| BfmI | CTRYAG | 5 cut(s) | 638, 796, 1753, 1999, 2121 |
| BfrI | CTTAAG | 1 cut(s) | 1355 |
| BfuAI | ACCTGC | 2 cut(s) | 1666, 1699 |
| BglII | AGATCT | 1 cut(s) | 2095 |
| BisI | GCNGC | 6 cut(s) | 6, 711, 796, 1383, 1674, 1773 |
| BlsI | GCNGC | 6 cut(s) | 7, 712, 797, 1384, 1675, 1774 |
| BmcAI | AGTACT | 1 cut(s) | 1021 |
| Bme1390I | CCNGG | 6 cut(s) | 883, 997, 1116, 1245, 1736, 2040 |
| Bme18I | GGWCC | 3 cut(s) | 272, 867, 1688 |
| BmeT110I | CYCGRG | 2 cut(s) | 1212, 1888 |
| BmgT120I | GGNCC | 3 cut(s) | 272, 867, 1688 |
| BmiI | GGNNCC | 7 cut(s) | 993, 1001, 1120, 1366, 1677, 1689, 1851 |
| BmrFI | CCNGG | 6 cut(s) | 883, 997, 1116, 1245, 1736, 2040 |
| BmsI | GCATC | 3 cut(s) | 1000, 1087, 1932 |
| BpiI | GAAGAC | 3 cut(s) | 678, 1390, 1464 |
| BpmI | CTGGAG | 1 cut(s) | 2022 |
| Bpu14I | TTCGAA | 1 cut(s) | 2179 |
| BpuEI | CTTGAG | 4 cut(s) | 620, 682, 1090, 1203 |
| BpuMI | CCSGG | 1 cut(s) | 997 |
| Bsa29I | ATCGAT | 2 cut(s) | 384, 2115 |
| BsaAI | YACGTR | 1 cut(s) | 920 |
| BsaI | GGTCTC | 1 cut(s) | 1891 |
| BsaJI | CCNNGG | 6 cut(s) | 123, 881, 995, 1153, 1734, 2520 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 984, 1014 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 281, 864, 1552, 1664, 1685, 2039, 2126, 2293, 2521 |
| Bse1I | ACTGG | 7 cut(s) | 458, 474, 870, 1662, 1853, 2234, 2487 |
| Bse3DI | GCAATG | 1 cut(s) | 1368 |
| BseBI | CCWGG | 5 cut(s) | 883, 1116, 1245, 1736, 2040 |
| BseCI | ATCGAT | 2 cut(s) | 384, 2115 |
| BseDI | CCNNGG | 6 cut(s) | 123, 881, 995, 1153, 1734, 2520 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 281, 864, 1552, 1664, 1685, 2039, 2126, 2293, 2521 |
| BseMI | GCAATG | 1 cut(s) | 1368 |
| BseMII | CTCAG | 2 cut(s) | 416, 2435 |
| BseNI | ACTGG | 7 cut(s) | 458, 474, 870, 1662, 1853, 2234, 2487 |
| BseRI | GAGGAG | 1 cut(s) | 2025 |
| BseSI | GKGCMC | 4 cut(s) | 289, 616, 925, 1797 |
| BseXI | GCAGC | 3 cut(s) | 697, 782, 1759 |
| BseYI | CCCAGC | 1 cut(s) | 2515 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1455 |
| BshNI | GGYRCC | 2 cut(s) | 991, 1675 |
| BshVI | ATCGAT | 2 cut(s) | 384, 2115 |
| BsiEI | CGRYCG | 1 cut(s) | 1455 |
| BsiHKAI | GWGCWC | 7 cut(s) | 217, 289, 616, 1219, 1520, 1797, 1998 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1212, 1888 |
| BsiSI | CCGG | 1 cut(s) | 997 |
| BslFI | GGGAC | 3 cut(s) | 1701, 1716, 2498 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 281, 864, 1552, 1664, 1685, 2039, 2126, 2293, 2521 |
| BsmAI | GTCTC | 4 cut(s) | 1799, 1891, 2291, 2495 |
| BsmBI | CGTCTC | 1 cut(s) | 2291 |
| BsmFI | GGGAC | 3 cut(s) | 1701, 1716, 2498 |
| BsmI | GAATGC | 3 cut(s) | 1113, 1694, 2365 |
| Bso31I | GGTCTC | 1 cut(s) | 1891 |
| BsoBI | CYCGRG | 2 cut(s) | 1212, 1888 |
| Bsp119I | TTCGAA | 1 cut(s) | 2179 |
| Bsp1286I | GDGCHC | 8 cut(s) | 217, 289, 616, 925, 1219, 1520, 1797, 1998 |
| Bsp1407I | TGTACA | 2 cut(s) | 374, 961 |
| Bsp143I | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| BspACI | CCGC | 3 cut(s) | 1382, 1673, 2159 |
| BspCNI | CTCAG | 2 cut(s) | 415, 2436 |
| BspDI | ATCGAT | 2 cut(s) | 384, 2115 |
| BspLI | GGNNCC | 7 cut(s) | 993, 1001, 1120, 1366, 1677, 1689, 1851 |
| BspMAI | CTGCAG | 3 cut(s) | 800, 1757, 2003 |
| BspMI | ACCTGC | 2 cut(s) | 1666, 1699 |
| BspPI | GGATC | 6 cut(s) | 1113, 1126, 1575, 1844, 1857, 2111 |
| BspT104I | TTCGAA | 1 cut(s) | 2179 |
| BspT107I | GGYRCC | 2 cut(s) | 991, 1675 |
| BspTI | CTTAAG | 1 cut(s) | 1355 |
| BspTNI | GGTCTC | 1 cut(s) | 1891 |
| BsrDI | GCAATG | 1 cut(s) | 1368 |
| BsrGI | TGTACA | 2 cut(s) | 374, 961 |
| BsrI | ACTGG | 7 cut(s) | 458, 474, 870, 1662, 1853, 2234, 2487 |
| BssECI | CCNNGG | 6 cut(s) | 123, 881, 995, 1153, 1734, 2520 |
| BssMI | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| BssNAI | GTATAC | 1 cut(s) | 2343 |
| BssT1I | CCWWGG | 2 cut(s) | 123, 1153 |
| Bst1107I | GTATAC | 1 cut(s) | 2343 |
| Bst2UI | CCWGG | 5 cut(s) | 883, 1116, 1245, 1736, 2040 |
| Bst4CI | ACNGT | 3 cut(s) | 379, 618, 1463 |
| Bst6I | CTCTTC | 2 cut(s) | 1086, 1775 |
| BstAFI | CTTAAG | 1 cut(s) | 1355 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1379 |
| BstAUI | TGTACA | 2 cut(s) | 374, 961 |
| BstBAI | YACGTR | 1 cut(s) | 920 |
| BstBI | TTCGAA | 1 cut(s) | 2179 |
| BstC8I | GCNNGC | 2 cut(s) | 793, 2013 |
| BstDEI | CTNAG | 4 cut(s) | 402, 1529, 1823, 2444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| BstKTI | GATC | 8 cut(s) | 384, 1121, 1282, 1570, 1852, 2098, 2119, 2319 |
| BstMAI | GTCTC | 4 cut(s) | 1799, 1891, 2291, 2495 |
| BstMBI | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| BstMCI | CGRYCG | 1 cut(s) | 1455 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1379 |
| BstNI | CCWGG | 5 cut(s) | 883, 1116, 1245, 1736, 2040 |
| BstNSI | RCATGY | 4 cut(s) | 260, 540, 1552, 2031 |
| BstSCI | CCNGG | 6 cut(s) | 881, 995, 1114, 1243, 1734, 2038 |
| BstSFI | CTRYAG | 5 cut(s) | 638, 796, 1753, 1999, 2121 |
| BstSLI | GKGCMC | 4 cut(s) | 289, 616, 925, 1797 |
| BstV1I | GCAGC | 3 cut(s) | 697, 782, 1759 |
| BstV2I | GAAGAC | 3 cut(s) | 678, 1390, 1464 |
| BstX2I | RGATCY | 3 cut(s) | 1118, 1849, 2095 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1669 |
| BstYI | RGATCY | 3 cut(s) | 1118, 1849, 2095 |
| BstZ17I | GTATAC | 1 cut(s) | 2343 |
| Bsu15I | ATCGAT | 2 cut(s) | 384, 2115 |
| BsuTUI | ATCGAT | 2 cut(s) | 384, 2115 |
| BtsIMutI | CAGTG | 6 cut(s) | 384, 467, 579, 614, 1669, 2429 |
| BveI | ACCTGC | 2 cut(s) | 1666, 1699 |
| Cac8I | GCNNGC | 2 cut(s) | 793, 2013 |
| CaiI | CAGNNNCTG | 2 cut(s) | 665, 1379 |
| Cfr13I | GGNCC | 3 cut(s) | 272, 867, 1688 |
| ClaI | ATCGAT | 2 cut(s) | 384, 2115 |
| CseI | GACGC | 1 cut(s) | 2308 |
| Csp6I | GTAC | 7 cut(s) | 375, 507, 962, 992, 1020, 1475, 2193 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 105, 140 |
| CviQI | GTAC | 7 cut(s) | 375, 507, 962, 992, 1020, 1475, 2193 |
| DdeI | CTNAG | 4 cut(s) | 402, 1529, 1823, 2444 |
| DpnI | GATC | 8 cut(s) | 383, 1120, 1281, 1569, 1851, 2097, 2118, 2318 |
| DpnII | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| DraIII | CACNNNGTG | 1 cut(s) | 920 |
| Eam1104I | CTCTTC | 2 cut(s) | 1086, 1775 |
| EarI | CTCTTC | 2 cut(s) | 1086, 1775 |
| Ecl136II | GAGCTC | 2 cut(s) | 1217, 1996 |
| Eco130I | CCWWGG | 2 cut(s) | 123, 1153 |
| Eco24I | GRGCYC | 2 cut(s) | 1219, 1998 |
| Eco31I | GGTCTC | 1 cut(s) | 1891 |
| Eco47I | GGWCC | 3 cut(s) | 272, 867, 1688 |
| Eco53kI | GAGCTC | 2 cut(s) | 1217, 1996 |
| Eco57I | CTGAAG | 2 cut(s) | 603, 1110 |
| Eco72I | CACGTG | 1 cut(s) | 920 |
| Eco88I | CYCGRG | 2 cut(s) | 1212, 1888 |
| EcoICRI | GAGCTC | 2 cut(s) | 1217, 1996 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1688 |
| EcoRI | GAATTC | 2 cut(s) | 1305, 1876 |
| EcoRII | CCWGG | 5 cut(s) | 881, 1114, 1243, 1734, 2038 |
| EcoT14I | CCWWGG | 2 cut(s) | 123, 1153 |
| EcoT22I | ATGCAT | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 2 cut(s) | 1219, 1998 |
| ErhI | CCWWGG | 2 cut(s) | 123, 1153 |
| Esp3I | CGTCTC | 1 cut(s) | 2291 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 654, 686 |
| FaqI | GGGAC | 3 cut(s) | 1701, 1716, 2498 |
| FauI | CCCGC | 1 cut(s) | 2166 |
| FauNDI | CATATG | 2 cut(s) | 1339, 1387 |
| FblI | GTMKAC | 4 cut(s) | 637, 847, 1956, 2342 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 711, 796, 1383, 1674, 1773 |
| FriOI | GRGCYC | 2 cut(s) | 1219, 1998 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 711, 796, 1383, 1674, 1773 |
| FspBI | CTAG | 6 cut(s) | 210, 333, 969, 1283, 2216, 2459 |
| GluI | GCNGC | 6 cut(s) | 6, 711, 796, 1383, 1674, 1773 |
| GsaI | CCCAGC | 1 cut(s) | 2519 |
| GsuI | CTGGAG | 1 cut(s) | 2022 |
| HapII | CCGG | 1 cut(s) | 997 |
| HgaI | GACGC | 1 cut(s) | 2308 |
| HindIII | AAGCTT | 2 cut(s) | 31, 68 |
| HpaII | CCGG | 1 cut(s) | 997 |
| Hpy188I | TCNGA | 9 cut(s) | 661, 948, 1106, 1467, 1492, 1869, 1898, 2445, 2564 |
| Hpy188III | TCNNGA | 9 cut(s) | 424, 1069, 1145, 1181, 1283, 1600, 1888, 1927, 2399 |
| HpyAV | CCTTC | 8 cut(s) | 19, 474, 563, 949, 1501, 1721, 1970, 2374 |
| HpyCH4III | ACNGT | 3 cut(s) | 379, 618, 1463 |
| HpyCH4IV | ACGT | 3 cut(s) | 919, 979, 1989 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1379 |
| HpyF3I | CTNAG | 4 cut(s) | 402, 1529, 1823, 2444 |
| HpySE526I | ACGT | 3 cut(s) | 919, 979, 1989 |
| KpnI | GGTACC | 1 cut(s) | 995 |
| Kzo9I | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| LmnI | GCTCC | 7 cut(s) | 220, 265, 325, 718, 1005, 1370, 2307 |
| Lsp1109I | GCAGC | 3 cut(s) | 697, 782, 1759 |
| LweI | GCATC | 3 cut(s) | 1000, 1087, 1932 |
| MaeI | CTAG | 6 cut(s) | 210, 333, 969, 1283, 2216, 2459 |
| MaeII | ACGT | 3 cut(s) | 919, 979, 1989 |
| MaeIII | GTNAC | 9 cut(s) | 128, 225, 405, 1247, 1254, 1611, 1855, 2524, 2550 |
| MalI | GATC | 8 cut(s) | 383, 1120, 1281, 1569, 1851, 2097, 2118, 2318 |
| MboI | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| MfeI | CAATTG | 1 cut(s) | 840 |
| MflI | RGATCY | 3 cut(s) | 1118, 1849, 2095 |
| MhlI | GDGCHC | 8 cut(s) | 217, 289, 616, 925, 1219, 1520, 1797, 1998 |
| MlyI | GAGTC | 2 cut(s) | 421, 830 |
| Mph1103I | ATGCAT | 1 cut(s) | 562 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2151 |
| MslI | CAYNNNNRTG | 4 cut(s) | 201, 435, 1553, 2310 |
| MspA1I | CMGCKG | 3 cut(s) | 710, 795, 2290 |
| MspCI | CTTAAG | 1 cut(s) | 1355 |
| MspI | CCGG | 1 cut(s) | 997 |
| MspR9I | CCNGG | 6 cut(s) | 883, 997, 1116, 1245, 1736, 2040 |
| MunI | CAATTG | 1 cut(s) | 840 |
| Mva1269I | GAATGC | 3 cut(s) | 1113, 1694, 2365 |
| MvaI | CCWGG | 5 cut(s) | 883, 1116, 1245, 1736, 2040 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1379 |
| NciI | CCSGG | 1 cut(s) | 997 |
| NdeI | CATATG | 2 cut(s) | 1339, 1387 |
| NdeII | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| NlaIV | GGNNCC | 7 cut(s) | 993, 1001, 1120, 1366, 1677, 1689, 1851 |
| NmeAIII | GCCGAG | 1 cut(s) | 2545 |
| NmuCI | GTSAC | 5 cut(s) | 128, 405, 1247, 1611, 1855 |
| NsiI | ATGCAT | 1 cut(s) | 562 |
| NspI | RCATGY | 4 cut(s) | 260, 540, 1552, 2031 |
| NspV | TTCGAA | 1 cut(s) | 2179 |
| PaeR7I | CTCGAG | 1 cut(s) | 1888 |
| PciI | ACATGT | 1 cut(s) | 256 |
| PctI | GAATGC | 3 cut(s) | 1113, 1694, 2365 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2151 |
| PfeI | GAWTC | 8 cut(s) | 80, 193, 233, 704, 1184, 1582, 1625, 2176 |
| PflFI | GACNNNGTC | 1 cut(s) | 1394 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 281, 1552, 2293 |
| PkrI | GCNGC | 6 cut(s) | 7, 712, 797, 1384, 1675, 1774 |
| PleI | GAGTC | 2 cut(s) | 421, 830 |
| PmaCI | CACGTG | 1 cut(s) | 920 |
| PmlI | CACGTG | 1 cut(s) | 920 |
| PpsI | GAGTC | 2 cut(s) | 421, 830 |
| Ppu21I | YACGTR | 1 cut(s) | 920 |
| PpuMI | RGGWCCY | 1 cut(s) | 1688 |
| PscI | ACATGT | 1 cut(s) | 256 |
| PshBI | ATTAAT | 1 cut(s) | 249 |
| Psp124BI | GAGCTC | 2 cut(s) | 1219, 1998 |
| Psp1406I | AACGTT | 1 cut(s) | 1989 |
| Psp5II | RGGWCCY | 1 cut(s) | 1688 |
| Psp6I | CCWGG | 5 cut(s) | 881, 1114, 1243, 1734, 2038 |
| PspCI | CACGTG | 1 cut(s) | 920 |
| PspFI | CCCAGC | 1 cut(s) | 2515 |
| PspGI | CCWGG | 5 cut(s) | 881, 1114, 1243, 1734, 2038 |
| PspN4I | GGNNCC | 7 cut(s) | 993, 1001, 1120, 1366, 1677, 1689, 1851 |
| PspPI | GGNCC | 3 cut(s) | 272, 867, 1688 |
| PspPPI | RGGWCCY | 1 cut(s) | 1688 |
| PstI | CTGCAG | 3 cut(s) | 800, 1757, 2003 |
| PstNI | CAGNNNCTG | 2 cut(s) | 665, 1379 |
| PsuI | RGATCY | 3 cut(s) | 1118, 1849, 2095 |
| PsyI | GACNNNGTC | 1 cut(s) | 1394 |
| PvuII | CAGCTG | 3 cut(s) | 710, 795, 2290 |
| RsaI | GTAC | 7 cut(s) | 376, 508, 963, 993, 1021, 1476, 2194 |
| RsaNI | GTAC | 7 cut(s) | 375, 507, 962, 992, 1020, 1475, 2193 |
| RseI | CAYNNNNRTG | 4 cut(s) | 201, 435, 1553, 2310 |
| SacI | GAGCTC | 2 cut(s) | 1219, 1998 |
| SatI | GCNGC | 6 cut(s) | 6, 711, 796, 1383, 1674, 1773 |
| Sau3AI | GATC | 8 cut(s) | 381, 1118, 1279, 1567, 1849, 2095, 2116, 2316 |
| Sau96I | GGNCC | 3 cut(s) | 272, 867, 1688 |
| ScaI | AGTACT | 1 cut(s) | 1021 |
| SchI | GAGTC | 2 cut(s) | 421, 830 |
| ScrFI | CCNGG | 6 cut(s) | 883, 997, 1116, 1245, 1736, 2040 |
| SduI | GDGCHC | 8 cut(s) | 217, 289, 616, 925, 1219, 1520, 1797, 1998 |
| SfaNI | GCATC | 3 cut(s) | 1000, 1087, 1932 |
| SfcI | CTRYAG | 5 cut(s) | 638, 796, 1753, 1999, 2121 |
| Sfr274I | CTCGAG | 1 cut(s) | 1888 |
| SfuI | TTCGAA | 1 cut(s) | 2179 |
| SinI | GGWCC | 3 cut(s) | 272, 867, 1688 |
| SlaI | CTCGAG | 1 cut(s) | 1888 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 201, 435, 1553, 2310 |
| SmlI | CTYRAG | 6 cut(s) | 599, 697, 1069, 1218, 1355, 1888 |
| SmoI | CTYRAG | 6 cut(s) | 599, 697, 1069, 1218, 1355, 1888 |
| SpeI | ACTAGT | 1 cut(s) | 332 |
| SsiI | CCGC | 3 cut(s) | 1382, 1673, 2159 |
| SspI | AATATT | 1 cut(s) | 1969 |
| SspMI | CTAG | 6 cut(s) | 210, 333, 969, 1283, 2216, 2459 |
| SstI | GAGCTC | 2 cut(s) | 1219, 1998 |
| StyD4I | CCNGG | 6 cut(s) | 881, 995, 1114, 1243, 1734, 2038 |
| StyI | CCWWGG | 2 cut(s) | 123, 1153 |
| TaaI | ACNGT | 3 cut(s) | 379, 618, 1463 |
| TaiI | ACGT | 3 cut(s) | 922, 982, 1992 |
| TaqI | TCGA | 7 cut(s) | 231, 384, 1599, 1889, 2005, 2115, 2179 |
| TaqII | GACCGA | 1 cut(s) | 1469 |
| TatI | WGTACW | 5 cut(s) | 374, 961, 1019, 1474, 2192 |
| TauI | GCSGC | 2 cut(s) | 1385, 1676 |
| TfiI | GAWTC | 8 cut(s) | 80, 193, 233, 704, 1184, 1582, 1625, 2176 |
| TscAI | CASTG | 6 cut(s) | 384, 474, 586, 621, 1669, 2436 |
| TseFI | GTSAC | 5 cut(s) | 128, 405, 1247, 1611, 1855 |
| TseI | GCWGC | 4 cut(s) | 5, 710, 795, 1772 |
| Tsp45I | GTSAC | 5 cut(s) | 128, 405, 1247, 1611, 1855 |
| TspGWI | ACGGA | 2 cut(s) | 932, 1620 |
| TspRI | CASTG | 6 cut(s) | 384, 474, 586, 621, 1669, 2436 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1394 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 281, 1552, 2293 |
| Vha464I | CTTAAG | 1 cut(s) | 1355 |
| VneI | GTGCAC | 3 cut(s) | 285, 612, 1793 |
| VpaK11BI | GGWCC | 3 cut(s) | 272, 867, 1688 |
| VspI | ATTAAT | 1 cut(s) | 249 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| XapI | RAATTY | 7 cut(s) | 98, 396, 413, 1305, 1876, 1905, 2084 |
| XbaI | TCTAGA | 1 cut(s) | 1282 |
| XceI | RCATGY | 4 cut(s) | 260, 540, 1552, 2031 |
| XhoI | CTCGAG | 1 cut(s) | 1888 |
| XmiI | GTMKAC | 4 cut(s) | 637, 847, 1956, 2342 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2151 |
| XspI | CTAG | 6 cut(s) | 210, 333, 969, 1283, 2216, 2459 |
| ZrmI | AGTACT | 1 cut(s) | 1021 |
| Zsp2I | ATGCAT | 1 cut(s) | 562 |