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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 |
| fragaria_vesca | FvH4_1g19880 |
| malus_domestica | MD01G1037900.v1.1 |
| prunus_persica | Prupe.6G196800_v2.0.a1 |
| pyrus_communis | pycom01g06590 |
| rosa_chinensis | RchiOBHm_Chr2g0111701 |
| rosa_laevigata | RLG00000017918 |
| rosa_multiflora | Rmu_sc0000448.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00132160 |
| rosa_rugosa | Rorug02G0175500 |
| rosa_samantha | Rh2AG228500 Rh2BG240800 Rh2CG231900 Rh2DG236500 |
| rosa_wichuraiana | Rw2G017650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 625, 1954 |
| Acc36I | ACCTGC | 2 cut(s) | 625, 1954 |
| AccB1I | GGYRCC | 2 cut(s) | 332, 1942 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 425, 1277 |
| AccI | GTMKAC | 1 cut(s) | 552 |
| AccII | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| AciI | CCGC | 8 cut(s) | 9, 2028, 2624, 2684, 2869, 3026, 3076, 3228 |
| AclWI | GGATC | 6 cut(s) | 352, 1147, 1282, 1830, 2358, 3274 |
| AcoI | YGGCCR | 2 cut(s) | 51, 2588 |
| AcsI | RAATTY | 9 cut(s) | 150, 168, 1339, 1597, 1637, 2012, 2160, 2564, 2794 |
| AcuI | CTGAAG | 6 cut(s) | 750, 1266, 2567, 2708, 3020, 3314 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 60, 425, 1277, 1919, 2381, 2805 |
| AflII | CTTAAG | 1 cut(s) | 1514 |
| AflIII | ACRYGT | 2 cut(s) | 448, 877 |
| AhlI | ACTAGT | 1 cut(s) | 287 |
| AjnI | CCWGG | 3 cut(s) | 1270, 3189, 3262 |
| Alw21I | GWGCWC | 4 cut(s) | 1775, 1800, 2270, 2538 |
| Alw26I | GTCTC | 6 cut(s) | 87, 1733, 2054, 2361, 2856, 3243 |
| Alw44I | GTGCAC | 1 cut(s) | 2534 |
| AlwI | GGATC | 6 cut(s) | 352, 1147, 1282, 1830, 2358, 3274 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 35, 812, 1277, 2353 |
| Ama87I | CYCGRG | 1 cut(s) | 2200 |
| AoxI | GGCC | 6 cut(s) | 51, 1421, 1612, 1910, 2588, 2825 |
| ApaLI | GTGCAC | 1 cut(s) | 2534 |
| ApeKI | GCWGC | 7 cut(s) | 145, 561, 860, 951, 1382, 2205, 3055 |
| ApoI | RAATTY | 9 cut(s) | 150, 168, 1339, 1597, 1637, 2012, 2160, 2564, 2794 |
| AspA2I | CCTAGG | 1 cut(s) | 1108 |
| AspLEI | GCGC | 7 cut(s) | 728, 761, 1008, 1204, 1933, 2445, 3174 |
| AspS9I | GGNCC | 5 cut(s) | 1493, 1613, 2767, 2826, 3109 |
| AsuC2I | CCSGG | 3 cut(s) | 1401, 2201, 2202 |
| AsuHPI | GGTGA | 7 cut(s) | 459, 606, 1233, 1292, 1325, 1723, 2295 |
| AsuII | TTCGAA | 2 cut(s) | 395, 500 |
| AsuNHI | GCTAGC | 1 cut(s) | 1750 |
| AvaI | CYCGRG | 1 cut(s) | 2200 |
| AvaII | GGWCC | 3 cut(s) | 1493, 2767, 3109 |
| AvrII | CCTAGG | 1 cut(s) | 1108 |
| AxyI | CCTNAGG | 1 cut(s) | 1989 |
| BaeGI | GKGCMC | 3 cut(s) | 337, 2098, 2538 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1403, 1436 |
| BalI | TGGCCA | 1 cut(s) | 53 |
| BanI | GGYRCC | 2 cut(s) | 332, 1942 |
| BanII | GRGCYC | 1 cut(s) | 715 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 332, 364 |
| BbsI | GAAGAC | 1 cut(s) | 692 |
| Bbv12I | GWGCWC | 4 cut(s) | 1775, 1800, 2270, 2538 |
| BbvI | GCAGC | 7 cut(s) | 157, 573, 847, 938, 1369, 2192, 3067 |
| BceAI | ACGGC | 1 cut(s) | 2430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2861, 2895 |
| BciT130I | CCWGG | 3 cut(s) | 1272, 3191, 3264 |
| BclI | TGATCA | 3 cut(s) | 163, 1323, 3088 |
| BcnI | CCSGG | 3 cut(s) | 1401, 2201, 2202 |
| BcoDI | GTCTC | 6 cut(s) | 87, 1733, 2054, 2361, 2856, 3243 |
| BcuI | ACTAGT | 1 cut(s) | 287 |
| BfaI | CTAG | 8 cut(s) | 288, 948, 1109, 1370, 1751, 2471, 2945, 2976 |
| BfmI | CTRYAG | 1 cut(s) | 952 |
| BfoI | RGCGCY | 2 cut(s) | 1009, 2446 |
| BfrI | CTTAAG | 1 cut(s) | 1514 |
| BfuAI | ACCTGC | 2 cut(s) | 625, 1954 |
| BglII | AGATCT | 1 cut(s) | 2212 |
| BlnI | CCTAGG | 1 cut(s) | 1108 |
| BmcAI | AGTACT | 2 cut(s) | 68, 292 |
| Bme1390I | CCNGG | 6 cut(s) | 1272, 1401, 2201, 2202, 3191, 3264 |
| Bme18I | GGWCC | 3 cut(s) | 1493, 2767, 3109 |
| BmeT110I | CYCGRG | 1 cut(s) | 2200 |
| BmgT120I | GGNCC | 5 cut(s) | 1493, 1613, 2767, 2826, 3109 |
| BmiI | GGNNCC | 8 cut(s) | 236, 334, 1081, 1525, 1944, 2769, 2828, 3110 |
| BmrFI | CCNGG | 6 cut(s) | 1272, 1401, 2201, 2202, 3191, 3264 |
| BmrI | ACTGGG | 1 cut(s) | 623 |
| BmsI | GCATC | 8 cut(s) | 140, 670, 763, 1243, 1652, 2383, 2874, 3005 |
| BmtI | GCTAGC | 1 cut(s) | 1754 |
| BmuI | ACTGGG | 1 cut(s) | 623 |
| BoxI | GACNNNNGTC | 1 cut(s) | 996 |
| BpiI | GAAGAC | 1 cut(s) | 692 |
| BpmI | CTGGAG | 1 cut(s) | 1463 |
| Bpu14I | TTCGAA | 2 cut(s) | 395, 500 |
| BpuEI | CTTGAG | 2 cut(s) | 541, 1246 |
| BpuMI | CCSGG | 3 cut(s) | 1401, 2201, 2202 |
| Bsa29I | ATCGAT | 1 cut(s) | 3269 |
| BsaAI | YACGTR | 1 cut(s) | 3308 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 7 cut(s) | 87, 977, 1108, 1344, 1539, 1616, 2200 |
| BsaWI | WCCGGW | 2 cut(s) | 2308, 3111 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 60, 425, 1277, 1919, 2381, 2805 |
| Bse1I | ACTGG | 5 cut(s) | 183, 629, 1917, 2082, 2842 |
| Bse21I | CCTNAGG | 1 cut(s) | 1989 |
| Bse3DI | GCAATG | 3 cut(s) | 592, 1187, 1575 |
| BseBI | CCWGG | 3 cut(s) | 1272, 3191, 3264 |
| BseCI | ATCGAT | 1 cut(s) | 3269 |
| BseDI | CCNNGG | 7 cut(s) | 87, 977, 1108, 1344, 1539, 1616, 2200 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 60, 425, 1277, 1919, 2381, 2805 |
| BseMI | GCAATG | 3 cut(s) | 592, 1187, 1575 |
| BseMII | CTCAG | 4 cut(s) | 84, 728, 1980, 2932 |
| BseNI | ACTGG | 5 cut(s) | 183, 629, 1917, 2082, 2842 |
| BseRI | GAGGAG | 3 cut(s) | 405, 2280, 3170 |
| BseSI | GKGCMC | 3 cut(s) | 337, 2098, 2538 |
| BseXI | GCAGC | 7 cut(s) | 157, 573, 847, 938, 1369, 2192, 3067 |
| BseYI | CCCAGC | 1 cut(s) | 218 |
| BsgI | GTGCAG | 1 cut(s) | 668 |
| Bsh1236I | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| BshFI | GGCC | 6 cut(s) | 53, 1423, 1614, 1912, 2590, 2827 |
| BshNI | GGYRCC | 2 cut(s) | 332, 1942 |
| BshVI | ATCGAT | 1 cut(s) | 3269 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1775, 1800, 2270, 2538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2200 |
| BsiSI | CCGG | 5 cut(s) | 582, 1400, 2201, 2309, 3112 |
| BslFI | GGGAC | 3 cut(s) | 1362, 2753, 3122 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 60, 425, 1277, 1919, 2381, 2805 |
| BsmAI | GTCTC | 6 cut(s) | 87, 1733, 2054, 2361, 2856, 3243 |
| BsmFI | GGGAC | 3 cut(s) | 1362, 2753, 3122 |
| BsmI | GAATGC | 4 cut(s) | 776, 1803, 2559, 3057 |
| BsnI | GGCC | 6 cut(s) | 53, 1423, 1614, 1912, 2590, 2827 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| BsoBI | CYCGRG | 1 cut(s) | 2200 |
| Bsp119I | TTCGAA | 2 cut(s) | 395, 500 |
| Bsp1286I | GDGCHC | 7 cut(s) | 337, 715, 1775, 1800, 2098, 2270, 2538 |
| Bsp1407I | TGTACA | 1 cut(s) | 2281 |
| Bsp68I | TCGCGA | 1 cut(s) | 1709 |
| BspACI | CCGC | 8 cut(s) | 9, 2028, 2624, 2684, 2869, 3026, 3076, 3228 |
| BspANI | GGCC | 6 cut(s) | 53, 1423, 1614, 1912, 2590, 2827 |
| BspCNI | CTCAG | 4 cut(s) | 83, 727, 1981, 2931 |
| BspDI | ATCGAT | 1 cut(s) | 3269 |
| BspFNI | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| BspLI | GGNNCC | 8 cut(s) | 236, 334, 1081, 1525, 1944, 2769, 2828, 3110 |
| BspMAI | CTGCAG | 1 cut(s) | 956 |
| BspMI | ACCTGC | 2 cut(s) | 625, 1954 |
| BspOI | GCTAGC | 1 cut(s) | 1754 |
| BspPI | GGATC | 6 cut(s) | 352, 1147, 1282, 1830, 2358, 3274 |
| BspQI | GCTCTTC | 1 cut(s) | 1189 |
| BspT104I | TTCGAA | 2 cut(s) | 395, 500 |
| BspT107I | GGYRCC | 2 cut(s) | 332, 1942 |
| BspTI | CTTAAG | 1 cut(s) | 1514 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 3 cut(s) | 592, 1187, 1575 |
| BsrGI | TGTACA | 1 cut(s) | 2281 |
| BsrI | ACTGG | 5 cut(s) | 183, 629, 1917, 2082, 2842 |
| BssECI | CCNNGG | 7 cut(s) | 87, 977, 1108, 1344, 1539, 1616, 2200 |
| BssT1I | CCWWGG | 4 cut(s) | 87, 977, 1108, 1344 |
| Bst2UI | CCWGG | 3 cut(s) | 1272, 3191, 3264 |
| Bst4CI | ACNGT | 6 cut(s) | 41, 765, 1079, 1540, 1553, 1720 |
| Bst6I | CTCTTC | 3 cut(s) | 1189, 1242, 2798 |
| BstAFI | CTTAAG | 1 cut(s) | 1514 |
| BstAUI | TGTACA | 1 cut(s) | 2281 |
| BstBAI | YACGTR | 1 cut(s) | 3308 |
| BstBI | TTCGAA | 2 cut(s) | 395, 500 |
| BstC8I | GCNNGC | 8 cut(s) | 622, 1105, 1752, 1914, 1935, 2468, 2588, 3170 |
| BstDEI | CTNAG | 7 cut(s) | 70, 714, 1558, 1735, 1989, 2918, 2930 |
| BstDSI | CCRYGG | 2 cut(s) | 1539, 1616 |
| BstFNI | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| BstH2I | RGCGCY | 2 cut(s) | 1009, 2446 |
| BstHHI | GCGC | 7 cut(s) | 728, 761, 1008, 1204, 1933, 2445, 3174 |
| BstMAI | GTCTC | 6 cut(s) | 87, 1733, 2054, 2361, 2856, 3243 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 145, 671, 680, 866, 1104, 2241, 2542, 2818 |
| BstNI | CCWGG | 3 cut(s) | 1272, 3191, 3264 |
| BstNSI | RCATGY | 3 cut(s) | 794, 881, 2239 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 996 |
| BstSCI | CCNGG | 6 cut(s) | 1270, 1399, 2199, 2200, 3189, 3262 |
| BstSFI | CTRYAG | 1 cut(s) | 952 |
| BstSLI | GKGCMC | 3 cut(s) | 337, 2098, 2538 |
| BstSNI | TACGTA | 1 cut(s) | 3308 |
| BstUI | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| BstV1I | GCAGC | 7 cut(s) | 157, 573, 847, 938, 1369, 2192, 3067 |
| BstV2I | GAAGAC | 1 cut(s) | 692 |
| BstX2I | RGATCY | 3 cut(s) | 1274, 2212, 2350 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 112, 1924 |
| BstYI | RGATCY | 3 cut(s) | 1274, 2212, 2350 |
| Bsu15I | ATCGAT | 1 cut(s) | 3269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1989 |
| BsuRI | GGCC | 6 cut(s) | 53, 1423, 1614, 1912, 2590, 2827 |
| BsuTUI | ATCGAT | 1 cut(s) | 3269 |
| BtgI | CCRYGG | 2 cut(s) | 1539, 1616 |
| BtgZI | GCGATG | 1 cut(s) | 2886 |
| BtsI | GCAGTG | 1 cut(s) | 1798 |
| BtsIMutI | CAGTG | 5 cut(s) | 54, 761, 1798, 1924, 2468 |
| BtuMI | TCGCGA | 1 cut(s) | 1709 |
| BveI | ACCTGC | 2 cut(s) | 625, 1954 |
| Cac8I | GCNNGC | 8 cut(s) | 622, 1105, 1752, 1914, 1935, 2468, 2588, 3170 |
| CaiI | CAGNNNCTG | 4 cut(s) | 35, 812, 1277, 2353 |
| CfoI | GCGC | 7 cut(s) | 728, 761, 1008, 1204, 1933, 2445, 3174 |
| Cfr13I | GGNCC | 5 cut(s) | 1493, 1613, 2767, 2826, 3109 |
| Cfr9I | CCCGGG | 1 cut(s) | 2200 |
| ClaI | ATCGAT | 1 cut(s) | 3269 |
| CseI | GACGC | 4 cut(s) | 821, 2420, 2818, 3163 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 310, 340, 345, 375 |
| DdeI | CTNAG | 7 cut(s) | 70, 714, 1558, 1735, 1989, 2918, 2930 |
| DraI | TTTAAA | 1 cut(s) | 2793 |
| EaeI | YGGCCR | 2 cut(s) | 51, 2588 |
| Eam1104I | CTCTTC | 3 cut(s) | 1189, 1242, 2798 |
| EarI | CTCTTC | 3 cut(s) | 1189, 1242, 2798 |
| EciI | GGCGGA | 1 cut(s) | 3041 |
| Eco105I | TACGTA | 1 cut(s) | 3308 |
| Eco130I | CCWWGG | 4 cut(s) | 87, 977, 1108, 1344 |
| Eco147I | AGGCCT | 1 cut(s) | 1912 |
| Eco24I | GRGCYC | 1 cut(s) | 715 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco47I | GGWCC | 3 cut(s) | 1493, 2767, 3109 |
| Eco57I | CTGAAG | 6 cut(s) | 750, 1266, 2567, 2708, 3020, 3314 |
| Eco81I | CCTNAGG | 1 cut(s) | 1989 |
| Eco88I | CYCGRG | 1 cut(s) | 2200 |
| EcoRI | GAATTC | 1 cut(s) | 150 |
| EcoRII | CCWGG | 3 cut(s) | 1270, 3189, 3262 |
| EcoT14I | CCWWGG | 4 cut(s) | 87, 977, 1108, 1344 |
| EcoT22I | ATGCAT | 2 cut(s) | 778, 2237 |
| EcoT38I | GRGCYC | 1 cut(s) | 715 |
| ErhI | CCWWGG | 4 cut(s) | 87, 977, 1108, 1344 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 801, 833, 2094, 2126 |
| FaqI | GGGAC | 3 cut(s) | 1362, 2753, 3122 |
| FauI | CCCGC | 2 cut(s) | 3069, 3221 |
| FauNDI | CATATG | 1 cut(s) | 1546 |
| FbaI | TGATCA | 3 cut(s) | 163, 1323, 3088 |
| FblI | GTMKAC | 1 cut(s) | 552 |
| FriOI | GRGCYC | 1 cut(s) | 715 |
| FspBI | CTAG | 8 cut(s) | 288, 948, 1109, 1370, 1751, 2471, 2945, 2976 |
| GlaI | GCGC | 7 cut(s) | 727, 760, 1007, 1203, 1932, 2444, 3173 |
| GsaI | CCCAGC | 1 cut(s) | 222 |
| GsuI | CTGGAG | 1 cut(s) | 1463 |
| HaeII | RGCGCY | 2 cut(s) | 1009, 2446 |
| HaeIII | GGCC | 6 cut(s) | 53, 1423, 1614, 1912, 2590, 2827 |
| HapII | CCGG | 5 cut(s) | 582, 1400, 2201, 2309, 3112 |
| HgaI | GACGC | 4 cut(s) | 821, 2420, 2818, 3163 |
| HhaI | GCGC | 7 cut(s) | 728, 761, 1008, 1204, 1933, 2445, 3174 |
| Hin6I | GCGC | 7 cut(s) | 726, 759, 1006, 1202, 1931, 2443, 3172 |
| HinP1I | GCGC | 7 cut(s) | 726, 759, 1006, 1202, 1931, 2443, 3172 |
| HincII | GTYRAC | 1 cut(s) | 2248 |
| HindII | GTYRAC | 1 cut(s) | 2248 |
| HindIII | AAGCTT | 5 cut(s) | 389, 885, 1144, 2649, 2960 |
| HpaI | GTTAAC | 1 cut(s) | 2248 |
| HpaII | CCGG | 5 cut(s) | 582, 1400, 2201, 2309, 3112 |
| HphI | GGTGA | 7 cut(s) | 459, 606, 1233, 1292, 1325, 1723, 2295 |
| Hpy166II | GTNNAC | 8 cut(s) | 467, 553, 614, 785, 1241, 2248, 2284, 2536 |
| Hpy8I | GTNNAC | 8 cut(s) | 467, 553, 614, 785, 1241, 2248, 2284, 2536 |
| Hpy99I | CGWCG | 2 cut(s) | 2414, 3179 |
| HpyCH4III | ACNGT | 6 cut(s) | 41, 765, 1079, 1540, 1553, 1720 |
| HpyCH4IV | ACGT | 4 cut(s) | 448, 854, 2904, 3307 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 145, 671, 680, 866, 1104, 2241, 2542, 2818 |
| HpyF3I | CTNAG | 7 cut(s) | 70, 714, 1558, 1735, 1989, 2918, 2930 |
| HpySE526I | ACGT | 4 cut(s) | 448, 854, 2904, 3307 |
| HspAI | GCGC | 7 cut(s) | 726, 759, 1006, 1202, 1931, 2443, 3172 |
| Ksp22I | TGATCA | 3 cut(s) | 163, 1323, 3088 |
| KspAI | GTTAAC | 1 cut(s) | 2248 |
| LguI | GCTCTTC | 1 cut(s) | 1189 |
| LmnI | GCTCC | 5 cut(s) | 868, 874, 1095, 1112, 1199 |
| Lsp1109I | GCAGC | 7 cut(s) | 157, 573, 847, 938, 1369, 2192, 3067 |
| LweI | GCATC | 8 cut(s) | 140, 670, 763, 1243, 1652, 2383, 2874, 3005 |
| MaeI | CTAG | 8 cut(s) | 288, 948, 1109, 1370, 1751, 2471, 2945, 2976 |
| MaeII | ACGT | 4 cut(s) | 448, 854, 2904, 3307 |
| MaeIII | GTNAC | 1 cut(s) | 1866 |
| MfeI | CAATTG | 2 cut(s) | 206, 1997 |
| MflI | RGATCY | 3 cut(s) | 1274, 2212, 2350 |
| MhlI | GDGCHC | 7 cut(s) | 337, 715, 1775, 1800, 2098, 2270, 2538 |
| MlsI | TGGCCA | 1 cut(s) | 53 |
| MluNI | TGGCCA | 1 cut(s) | 53 |
| MlyI | GAGTC | 3 cut(s) | 26, 986, 1993 |
| MmeI | TCCRAC | 1 cut(s) | 1480 |
| Mox20I | TGGCCA | 1 cut(s) | 53 |
| Mph1103I | ATGCAT | 2 cut(s) | 778, 2237 |
| MscI | TGGCCA | 1 cut(s) | 53 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2898 |
| Msp20I | TGGCCA | 1 cut(s) | 53 |
| MspA1I | CMGCKG | 1 cut(s) | 2686 |
| MspCI | CTTAAG | 1 cut(s) | 1514 |
| MspI | CCGG | 5 cut(s) | 582, 1400, 2201, 2309, 3112 |
| MspR9I | CCNGG | 6 cut(s) | 1272, 1401, 2201, 2202, 3191, 3264 |
| MunI | CAATTG | 2 cut(s) | 206, 1997 |
| Mva1269I | GAATGC | 4 cut(s) | 776, 1803, 2559, 3057 |
| MvaI | CCWGG | 3 cut(s) | 1272, 3191, 3264 |
| MvnI | CGCG | 5 cut(s) | 1709, 2624, 2871, 3174, 3228 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 145, 671, 680, 866, 1104, 2241, 2542, 2818 |
| NciI | CCSGG | 3 cut(s) | 1401, 2201, 2202 |
| NdeI | CATATG | 1 cut(s) | 1546 |
| NheI | GCTAGC | 1 cut(s) | 1750 |
| NlaIV | GGNNCC | 8 cut(s) | 236, 334, 1081, 1525, 1944, 2769, 2828, 3110 |
| NmeAIII | GCCGAG | 1 cut(s) | 2083 |
| NmuCI | GTSAC | 1 cut(s) | 1866 |
| NruI | TCGCGA | 1 cut(s) | 1709 |
| NsiI | ATGCAT | 2 cut(s) | 778, 2237 |
| NspI | RCATGY | 3 cut(s) | 794, 881, 2239 |
| NspV | TTCGAA | 2 cut(s) | 395, 500 |
| PaqCI | CACCTGC | 2 cut(s) | 625, 1954 |
| PceI | AGGCCT | 1 cut(s) | 1912 |
| PciI | ACATGT | 1 cut(s) | 877 |
| PciSI | GCTCTTC | 1 cut(s) | 1189 |
| PctI | GAATGC | 4 cut(s) | 776, 1803, 2559, 3057 |
| PfeI | GAWTC | 9 cut(s) | 14, 179, 278, 929, 982, 1877, 2431, 2784, 3032 |
| PflFI | GACNNNGTC | 1 cut(s) | 1553 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 425, 1277 |
| PleI | GAGTC | 3 cut(s) | 26, 986, 1992 |
| PpsI | GAGTC | 3 cut(s) | 26, 986, 1992 |
| Ppu21I | YACGTR | 1 cut(s) | 3308 |
| PscI | ACATGT | 1 cut(s) | 877 |
| PshAI | GACNNNNGTC | 1 cut(s) | 996 |
| Psp6I | CCWGG | 3 cut(s) | 1270, 3189, 3262 |
| PspFI | CCCAGC | 1 cut(s) | 218 |
| PspGI | CCWGG | 3 cut(s) | 1270, 3189, 3262 |
| PspN4I | GGNNCC | 8 cut(s) | 236, 334, 1081, 1525, 1944, 2769, 2828, 3110 |
| PspPI | GGNCC | 5 cut(s) | 1493, 1613, 2767, 2826, 3109 |
| PstI | CTGCAG | 1 cut(s) | 956 |
| PstNI | CAGNNNCTG | 4 cut(s) | 35, 812, 1277, 2353 |
| PsuI | RGATCY | 3 cut(s) | 1274, 2212, 2350 |
| PsyI | GACNNNGTC | 1 cut(s) | 1553 |
| RruI | TCGCGA | 1 cut(s) | 1709 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2898 |
| SapI | GCTCTTC | 1 cut(s) | 1189 |
| Sau96I | GGNCC | 5 cut(s) | 1493, 1613, 2767, 2826, 3109 |
| ScaI | AGTACT | 2 cut(s) | 68, 292 |
| SchI | GAGTC | 3 cut(s) | 26, 986, 1993 |
| ScrFI | CCNGG | 6 cut(s) | 1272, 1401, 2201, 2202, 3191, 3264 |
| SduI | GDGCHC | 7 cut(s) | 337, 715, 1775, 1800, 2098, 2270, 2538 |
| SfaNI | GCATC | 8 cut(s) | 140, 670, 763, 1243, 1652, 2383, 2874, 3005 |
| SfcI | CTRYAG | 1 cut(s) | 952 |
| SfuI | TTCGAA | 2 cut(s) | 395, 500 |
| SinI | GGWCC | 3 cut(s) | 1493, 2767, 3109 |
| SmaI | CCCGGG | 1 cut(s) | 2202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2898 |
| SmlI | CTYRAG | 3 cut(s) | 556, 1225, 1514 |
| SmoI | CTYRAG | 3 cut(s) | 556, 1225, 1514 |
| SnaBI | TACGTA | 1 cut(s) | 3308 |
| SpeI | ACTAGT | 1 cut(s) | 287 |
| SseBI | AGGCCT | 1 cut(s) | 1912 |
| SsiI | CCGC | 8 cut(s) | 9, 2028, 2624, 2684, 2869, 3026, 3076, 3228 |
| SspI | AATATT | 4 cut(s) | 1978, 2149, 2224, 2712 |
| SspMI | CTAG | 8 cut(s) | 288, 948, 1109, 1370, 1751, 2471, 2945, 2976 |
| StuI | AGGCCT | 1 cut(s) | 1912 |
| StyD4I | CCNGG | 6 cut(s) | 1270, 1399, 2199, 2200, 3189, 3262 |
| StyI | CCWWGG | 4 cut(s) | 87, 977, 1108, 1344 |
| TaaI | ACNGT | 6 cut(s) | 41, 765, 1079, 1540, 1553, 1720 |
| TaiI | ACGT | 4 cut(s) | 451, 857, 2907, 3310 |
| TaqII | GACCGA | 2 cut(s) | 191, 2755 |
| TatI | WGTACW | 7 cut(s) | 66, 290, 1258, 2281, 3127, 3159, 3280 |
| TauI | GCSGC | 3 cut(s) | 12, 2030, 2686 |
| TfiI | GAWTC | 9 cut(s) | 14, 179, 278, 929, 982, 1877, 2431, 2784, 3032 |
| TscAI | CASTG | 5 cut(s) | 61, 768, 1805, 1924, 2468 |
| TseFI | GTSAC | 1 cut(s) | 1866 |
| TseI | GCWGC | 7 cut(s) | 145, 561, 860, 951, 1382, 2205, 3055 |
| Tsp45I | GTSAC | 1 cut(s) | 1866 |
| TspGWI | ACGGA | 3 cut(s) | 291, 1516, 1649 |
| TspMI | CCCGGG | 1 cut(s) | 2200 |
| TspRI | CASTG | 5 cut(s) | 61, 768, 1805, 1924, 2468 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1553 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 425, 1277 |
| Vha464I | CTTAAG | 1 cut(s) | 1514 |
| VneI | GTGCAC | 1 cut(s) | 2534 |
| VpaK11BI | GGWCC | 3 cut(s) | 1493, 2767, 3109 |
| XapI | RAATTY | 9 cut(s) | 150, 168, 1339, 1597, 1637, 2012, 2160, 2564, 2794 |
| XceI | RCATGY | 3 cut(s) | 794, 881, 2239 |
| XmaI | CCCGGG | 1 cut(s) | 2200 |
| XmaJI | CCTAGG | 1 cut(s) | 1108 |
| XmiI | GTMKAC | 1 cut(s) | 552 |
| XspI | CTAG | 8 cut(s) | 288, 948, 1109, 1370, 1751, 2471, 2945, 2976 |
| ZrmI | AGTACT | 2 cut(s) | 68, 292 |
| Zsp2I | ATGCAT | 2 cut(s) | 778, 2237 |