Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014206

Physical Location & Seq

Genomic Coordinates Forward (+)

12135732 .. 12136753

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACCAGCAAGGAATATGCAACAACAAAGATCTTTCAATCTTGGAGTCGGATGAGGCCAGCGAAACTTGGCTGGTCAGTTTACATGATCATGATCGTCTTAAGGGATTACAAGGCAGAAACCAAAGATTTTCCGGGACCGTTGTTTCTGAAGAAGAACTGAAGATTCGCAATGAGCTTGAGATGGAAGTAGAAAAAGACTTGGAGGAAGAAATCAAAGATGGGTTACGCCACCTTGCTCTGAGATTGCACAGGCTTTATCAGCACCAAAAGGAGAGAAGTGCAAGCAAATTAGCATTTTGTGAGGTGAATATAAACATACAAATGGAAGGAGGAACCAAGATTGAAATAAAAGAGACCAAAAAGCCAGCACTATCTGAAAGGGAAAAGGGTCTTCCTCCTCGGCCTAGTTCTAGATCATCAGGAACTATGAATCCAGTTACGAAAGTGGGTTCAAACACAAAGAAATTTGATTGGGCAAAAAGTCTGAGATCGAGTGGTGGTCAAGGATGGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.67

Weight (kDa)

7.79

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26290
fragaria_vesca	FvH4_1g20030
malus_domestica	MD15G1315600.v1.1
prunus_persica	Prupe.6G196100_v2.0.a1 Prupe.6G196100_v2.0.a1
pyrus_communis	pycom15g27890
rosa_chinensis	RchiOBHm_Chr2g0111971
rosa_laevigata	RLG00000017942
rosa_multiflora	Rmu_sc0005518.1_g000004
rosa_roxburghii	Rroxscaffold_2G00131910
rosa_rugosa	Rorug02G0177600 Rorug02G0177700
rosa_samantha	Rh2AG229900 Rh2BG242700 Rh2CG234000 Rh2DG237700
rosa_wichuraiana	Rw2G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	2 cut(s)	171, 182
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	39, 347, 456
AloI	GAACNNNNNNTCC	2 cut(s)	418, 450
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	2 cut(s)	57, 404
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	4, 138
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	4, 138
BbsI	GAAGAC	1 cut(s)	386
BccI	CCATC	3 cut(s)	178, 215, 504
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	408, 414
BfrI	CTTAAG	1 cut(s)	101
BglII	AGATCT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	4, 138
BmgT120I	GGNCC	2 cut(s)	4, 138
BmiI	GGNNCC	2 cut(s)	139, 337
BmrFI	CCNGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	58, 515
BseJI	GATNNNNATC	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	233, 479
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	59, 406
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	59, 406
Bso31I	GGTCTC	1 cut(s)	350
Bsp143I	GATC	5 cut(s)	31, 88, 94, 416, 491
BspANI	GGCC	2 cut(s)	59, 406
BspCNI	CTCAG	2 cut(s)	234, 480
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	139, 337
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	5 cut(s)	31, 88, 94, 416, 491
Bst4CI	ACNGT	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	61, 286, 369
BstDEI	CTNAG	2 cut(s)	242, 488
BstF5I	GGATG	2 cut(s)	58, 515
BstKTI	GATC	5 cut(s)	34, 91, 97, 419, 494
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	5 cut(s)	31, 88, 94, 416, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	59, 406
BtsCI	GGATG	2 cut(s)	58, 515
Cac8I	GCNNGC	3 cut(s)	61, 286, 369
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	4, 138
CviAII	CATG	2 cut(s)	86, 92
CviJI	RGCY	6 cut(s)	59, 73, 178, 256, 367, 406
CviKI_1	RGCY	6 cut(s)	59, 73, 178, 256, 367, 406
DdeI	CTNAG	2 cut(s)	242, 488
DpnI	GATC	5 cut(s)	33, 90, 96, 418, 493
DpnII	GATC	5 cut(s)	31, 88, 94, 416, 491
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	4, 138
Eco57I	CTGAAG	2 cut(s)	171, 182
FaeI	CATG	2 cut(s)	89, 95
FaiI	YATR	6 cut(s)	19, 87, 93, 314, 320, 431
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	85, 91
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	2 cut(s)	408, 414
HaeIII	GGCC	2 cut(s)	59, 406
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	89, 95
HinfI	GANTC	3 cut(s)	47, 166, 433
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	5 cut(s)	52, 151, 243, 379, 489
Hpy188III	TCNNGA	3 cut(s)	92, 414, 423
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	21, 250, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	242, 488
Hsp92II	CATG	2 cut(s)	89, 95
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	31, 88, 94, 416, 491
LpnPI	CCDG	8 cut(s)	20, 59, 73, 148, 238, 381, 408, 450
MaeI	CTAG	2 cut(s)	408, 414
MaeIII	GTNAC	2 cut(s)	225, 439
MalI	GATC	5 cut(s)	33, 90, 96, 418, 493
MboI	GATC	5 cut(s)	31, 88, 94, 416, 491
MboII	GAAGA	5 cut(s)	164, 167, 175, 221, 386
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	2 cut(s)	290, 467
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	49, 199, 298, 326, 408, 411
MseI	TTAA	2 cut(s)	102, 520
MslI	CAYNNNNRTG	2 cut(s)	90, 323
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	5 cut(s)	31, 88, 94, 416, 491
NlaIII	CATG	2 cut(s)	89, 95
NlaIV	GGNNCC	2 cut(s)	139, 337
NmeAIII	GCCGAG	1 cut(s)	382
PagI	TCATGA	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	166, 433
PfoI	TCCNGGA	1 cut(s)	134
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	139, 337
PspPI	GGNCC	2 cut(s)	4, 138
PsuI	RGATCY	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	90, 323
SaqAI	TTAA	2 cut(s)	102, 520
Sau3AI	GATC	5 cut(s)	31, 88, 94, 416, 491
Sau96I	GGNCC	2 cut(s)	4, 138
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	3 cut(s)	180, 237, 309
SinI	GGWCC	2 cut(s)	4, 138
SmiMI	CAYNNNNRTG	2 cut(s)	90, 323
SmlI	CTYRAG	2 cut(s)	101, 179
SmoI	CTYRAG	2 cut(s)	101, 179
Sse9I	AATT	2 cut(s)	290, 467
SspMI	CTAG	2 cut(s)	408, 414
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	290, 467
TfiI	GAWTC	2 cut(s)	166, 433
Tru1I	TTAA	2 cut(s)	102, 520
Tru9I	TTAA	2 cut(s)	102, 520
TspDTI	ATGAA	1 cut(s)	446
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	4, 138
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	413
XspI	CTAG	2 cut(s)	408, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.