Rroxscaffold_2G00131910

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
68756554 .. 68757626
1073 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00131910.1

Sequence Viewer

Length: 531 bp
ATGGACCAGCAAGGAATATGCAACAATAAAGATCGTTCAATCTTGGAGTCGAACGAGGCCAGCGAAACTTGGCTGGTGACACATAAAGTAAGCTTTAATGATCATGATCGTCGTAAGGGATTACAAGGCAAAAACAGGAGATTTTCTGGGGCCAGTGTTTCCGAAGAAGAGCTGAAGATTCGCAATGAGCTTGAAATGGAAGTAGAAAAAGACTTGGAGGAAGAAATCAAAGATGGGATATGCCATCTTGCTCTGAGATTGCACAGGCTTTATCAGCACCAAAAGGAGAGAAGTGCAAGCAAATTAGCATTTTGTGAGGTGAATATAAACATACAAATGGAAGGAGGAACCAAGATTGAAATAAAAGAGACCAAAAGGCCAGCACCAGCTGAAAGGGAAAAGAATTTTCCTCCTCGGCCTAGTTCTAGATCATCAACTGTGAGATCAGTTATGAAAGTGGGTGCAAACACAAAGAAGTTTGATTGGGCCAAAAGTCTGAGATCGAGTGGTGGTCAAGGATGGAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

9.28

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26290
fragaria_vesca FvH4_1g20030
malus_domestica MD15G1315600.v1.1
prunus_persica Prupe.6G196100_v2.0.a1 Prupe.6G196100_v2.0.a1
pyrus_communis pycom15g27890
rosa_chinensis RchiOBHm_Chr2g0111971
rosa_laevigata RLG00000017942
rosa_multiflora Rmu_sc0005518.1_g000004
rosa_roxburghii Rroxscaffold_2G00131910
rosa_rugosa Rorug02G0177600 Rorug02G0177700
rosa_samantha Rh2AG229900 Rh2BG242700 Rh2CG234000 Rh2DG237700
rosa_wichuraiana Rw2G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 194
AgsI TTSAA 3 cut(s) 39, 194, 359
AluBI AGCT 4 cut(s) 93, 172, 190, 389
AluI AGCT 4 cut(s) 93, 172, 190, 389
Alw26I GTCTC 1 cut(s) 362
AoxI GGCC 5 cut(s) 57, 150, 377, 416, 486
ApoI RAATTY 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 4, 150, 486
AsuHPI GGTGA 2 cut(s) 88, 331
AvaII GGWCC 1 cut(s) 4
BccI CCATC 3 cut(s) 227, 252, 513
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 420, 426
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 3 cut(s) 4, 150, 486
BmiI GGNNCC 2 cut(s) 151, 349
BsaBI GATNNNNATC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 524
BseJI GATNNNNATC 1 cut(s) 105
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 245, 488
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 402
BshFI GGCC 5 cut(s) 59, 152, 379, 418, 488
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 5 cut(s) 59, 152, 379, 418, 488
Bso31I GGTCTC 1 cut(s) 362
Bsp143I GATC 6 cut(s) 31, 100, 106, 428, 443, 500
BspANI GGCC 5 cut(s) 59, 152, 379, 418, 488
BspCNI CTCAG 2 cut(s) 246, 489
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 151, 349
BspQI GCTCTTC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 6 cut(s) 31, 100, 106, 428, 443, 500
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 61, 298, 381
BstDEI CTNAG 2 cut(s) 254, 497
BstF5I GGATG 1 cut(s) 524
BstKTI GATC 6 cut(s) 34, 103, 109, 431, 446, 503
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 6 cut(s) 31, 100, 106, 428, 443, 500
BstMWI GCNNNNNNNGC 1 cut(s) 274
BsuRI GGCC 5 cut(s) 59, 152, 379, 418, 488
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 61, 298, 381
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 4, 150, 486
CviAII CATG 1 cut(s) 104
DdeI CTNAG 2 cut(s) 254, 497
DpnI GATC 6 cut(s) 33, 102, 108, 430, 445, 502
DpnII GATC 6 cut(s) 31, 100, 106, 428, 443, 500
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 1 cut(s) 107
FaiI YATR 7 cut(s) 19, 84, 105, 241, 326, 332, 452
FatI CATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 100
FspBI CTAG 2 cut(s) 420, 426
HaeIII GGCC 5 cut(s) 59, 152, 379, 418, 488
Hin1II CATG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 2 cut(s) 47, 178
HphI GGTGA 2 cut(s) 88, 331
Hpy188I TCNGA 3 cut(s) 163, 255, 498
Hpy188III TCNNGA 2 cut(s) 104, 426
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 21, 262, 296, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 254, 497
Hsp92II CATG 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 6 cut(s) 31, 100, 106, 428, 443, 500
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 9 cut(s) 20, 59, 73, 121, 132, 166, 250, 393, 399
MaeI CTAG 2 cut(s) 420, 426
MaeIII GTNAC 1 cut(s) 76
MalI GATC 6 cut(s) 33, 102, 108, 430, 445, 502
MboI GATC 6 cut(s) 31, 100, 106, 428, 443, 500
MboII GAAGA 4 cut(s) 176, 179, 187, 233
MluCI AATT 2 cut(s) 302, 403
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 49, 211, 310, 338, 420, 423
MseI TTAA 2 cut(s) 96, 529
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 6 cut(s) 31, 100, 106, 428, 443, 500
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 151, 349
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 76
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 151, 349
PspPI GGNCC 3 cut(s) 4, 150, 486
PvuII CAGCTG 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 96, 529
Sau3AI GATC 6 cut(s) 31, 100, 106, 428, 443, 500
Sau96I GGNCC 3 cut(s) 4, 150, 486
SchI GAGTC 1 cut(s) 56
SetI ASST 5 cut(s) 95, 174, 192, 321, 391
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 2 cut(s) 302, 403
SspMI CTAG 2 cut(s) 420, 426
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 2 cut(s) 50, 503
TasI AATT 2 cut(s) 302, 403
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 96, 529
Tru9I TTAA 2 cut(s) 96, 529
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 425
XspI CTAG 2 cut(s) 420, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.