pycom15g27890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014206
Physical Location & Seq
Forward (+)
23449353 .. 23449850
498 bp
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UTR
Exon/CDS
Intron
pycom15g27890.1

Sequence Viewer

Length: 498 bp
ATGAACGATGATGATCGATGGGAGGAATTACCGAGCAAAAAGAAGGGATTCACCGGGGCTATATCAGAAGAAGAGCTGAAGATTCGAAGTGAGGTTGAAATGGAGATCGAAAAAAACATGGAGGAAGAAATCAAAGATGGGATTTGCCATCTTGCTCTGAGATTGCAGAGGCTCTATCAACACCAAAAGGAAAGACGAAGTGCTGCTACAAATGGAAGAAAGAGTAATGATAACAAAGCATTTTGTGAGGTTAATATTAACATAAAAATGGAAGGAGGAACCAAGATTGAAATTAAAGAGACCAAAAAACCAGCGCCTGAAAAGGTTTGCCCTAATTGGACTAGTTCAGGAACATCAGAGAAATGTTGTCAACCAGTTACAAAGATGGCTAGAAATACCAAGAAGTTTGATTGGGCCAAGTCGCTGCGTTCGAGTGCTGGGCCTGCACTCGTCACTAACAAAAATAGCGGCCCACGTGAACTGGGTTGGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

9.05

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26290
fragaria_vesca FvH4_1g20030
malus_domestica MD15G1315600.v1.1
prunus_persica Prupe.6G196100_v2.0.a1 Prupe.6G196100_v2.0.a1
pyrus_communis pycom15g27890
rosa_chinensis RchiOBHm_Chr2g0111971
rosa_laevigata RLG00000017942
rosa_multiflora Rmu_sc0005518.1_g000004
rosa_roxburghii Rroxscaffold_2G00131910
rosa_rugosa Rorug02G0177600 Rorug02G0177700
rosa_samantha Rh2AG229900 Rh2BG242700 Rh2CG234000 Rh2DG237700
rosa_wichuraiana Rw2G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 98
AcvI CACGTG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 98, 290
AhlI ACTAGT 1 cut(s) 341
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 3 cut(s) 414, 440, 469
ApeKI GCWGC 2 cut(s) 203, 424
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 414, 440, 470
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 85
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbrPI CACGTG 1 cut(s) 476
BbvI GCAGC 2 cut(s) 190, 411
BccI CCATC 4 cut(s) 12, 131, 156, 379
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 2 cut(s) 342, 390
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 3 cut(s) 204, 425, 469
BlsI GCNGC 3 cut(s) 205, 426, 470
Bme1390I CCNGG 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 414, 440, 470
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 374, 486
Bse8I GATNNNNATC 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 12
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 374, 486
BseXI GCAGC 2 cut(s) 190, 411
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 3 cut(s) 416, 442, 471
BshVI ATCGAT 1 cut(s) 16
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 3 cut(s) 416, 442, 471
Bso31I GGTCTC 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 13, 105
BspACI CCGC 1 cut(s) 468
BspANI GGCC 3 cut(s) 416, 442, 471
BspCNI CTCAG 1 cut(s) 150
BspDI ATCGAT 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 374, 486
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 13, 105
Bst6I CTCTTC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 16, 108
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 13, 105
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 190, 411
Bsu15I ATCGAT 1 cut(s) 16
BsuRI GGCC 3 cut(s) 416, 442, 471
BsuTUI ATCGAT 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 414, 440, 470
ClaI ATCGAT 1 cut(s) 16
CviAII CATG 1 cut(s) 118
CviJI RGCY 7 cut(s) 59, 76, 172, 389, 416, 442, 471
CviKI_1 RGCY 7 cut(s) 59, 76, 172, 389, 416, 442, 471
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 15, 107
DpnII GATC 2 cut(s) 13, 105
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 98
Eco72I CACGTG 1 cut(s) 476
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 62, 119, 263
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 204, 425, 469
Fsp4HI GCNGC 3 cut(s) 204, 425, 469
FspBI CTAG 2 cut(s) 342, 390
GlaI GCGC 1 cut(s) 315
GluI GCNGC 3 cut(s) 204, 425, 469
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 3 cut(s) 416, 442, 471
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HinfI GANTC 2 cut(s) 48, 82
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 371, 479
Hpy188I TCNGA 3 cut(s) 67, 159, 358
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 371, 479
HpyAV CCTTC 2 cut(s) 37, 266
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 166, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 2 cut(s) 13, 105
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 8 cut(s) 67, 324, 330, 333, 387, 423, 456, 467
Lsp1109I GCAGC 2 cut(s) 190, 411
MaeI CTAG 2 cut(s) 342, 390
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 376, 451
MalI GATC 2 cut(s) 15, 107
MboI GATC 2 cut(s) 13, 105
MboII GAAGA 5 cut(s) 80, 83, 91, 137, 228
MluCI AATT 3 cut(s) 26, 291, 334
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 6 cut(s) 16, 85, 115, 162, 241, 269
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 3 cut(s) 252, 258, 294
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 55
NdeII GATC 2 cut(s) 13, 105
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 451
NspV TTCGAA 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 48, 82
PkrI GCNGC 3 cut(s) 205, 426, 470
PmaCI CACGTG 1 cut(s) 476
PmlI CACGTG 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 476
PspCI CACGTG 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 3 cut(s) 414, 440, 470
PstNI CAGNNNCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 252, 258, 294
SatI GCNGC 3 cut(s) 204, 425, 469
Sau3AI GATC 2 cut(s) 13, 105
Sau96I GGNCC 3 cut(s) 414, 440, 470
ScrFI CCNGG 1 cut(s) 55
SetI ASST 5 cut(s) 78, 96, 252, 327, 478
SfuI TTCGAA 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 3 cut(s) 26, 291, 334
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 342, 390
StyD4I CCNGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 16, 85, 108, 431
TasI AATT 3 cut(s) 26, 291, 334
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 2 cut(s) 48, 82
Tru1I TTAA 3 cut(s) 252, 258, 294
Tru9I TTAA 3 cut(s) 252, 258, 294
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 203, 424
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 342, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.