Rorug02G0177600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014206
Physical Location & Seq
Reverse (-)
16315189 .. 16316137
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0177600.1

Sequence Viewer

Length: 900 bp
ATGGCTACCTTATCTCTGTATGTTCTTCCAATCATGGTTTCCGCAGAGTCTCACTCCTACATTGTCCATATGGATTCCTCCCTCAAGCCCAAACCCTTCTTAGATCACCACCAATGGTATTTGTCCACCCTTTCCTCTCTGTCAGAGGGTGCTAATGGTAAGACGAAGCTGATCCATACCTACACTGAAGGAATCCAAGGCTTCAGTGCAATTCTCACCCTTTCAGAGCTCCAAGCCCTTACAAGCTCCCTTGGCTTCGTTTCCTATTCTCGCAATCGCCCTCTTAAACTTCTCACCACCCATTCTCCTCAATTCTTTGGTCTAACACCCAACTCTGGTGCTTGGCCTGTTTCAAATTATGGTGAAGATGTCATAATTGGGGTACTTGACACCGGAATTTGGCCCGAGAGTGAGAGCTTCAGCGAAGAAGGAATGACTCCAGTCCCATCTAGGTGGAAAGGAAAATGTGAATCGGGCACCCAATTCAACTCCTCCTACTGCAACAACAAACTCATTGGAGCTCGGTTCTACAACAAAGGTTATAGGGCAGAGAATCCCGACAAAAATATCTCGATGAACTCGGCCCGCGACACTTATGGACATGGGACTCATACTTCTTCCATTGCTGCCGCTACAGGCATGGCTTCAAGAGCTCGGCTAGCCATTTACAAAGTTGGTTGGTACGAGGAAGTGTCTCCATCTGATCTCCTTGCAGGTGTAGACCAAGCAATTCGAGATGGGTTCGACATATTGTCACTTTCTTTGGGTTACAGCTTATTTAATGACACGTATTTGGGTGATGACCCAGTTGCAGTAGCAACTTTTGCAGCTATGAAGAAGGGGATTTTTGTTGCAGCAGCAGCCGGGAACTATGGGCCTGAATATTTTTACCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.66

Weight (kDa)

5.76

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 19 - 97 6.9e-13 Peptidase inhibitor I9
Peptidase_S8 PF00082 121 - 291 3.2e-18 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26290
fragaria_vesca FvH4_1g20030
malus_domestica MD15G1315600.v1.1
prunus_persica Prupe.6G196100_v2.0.a1 Prupe.6G196100_v2.0.a1
pyrus_communis pycom15g27890
rosa_chinensis RchiOBHm_Chr2g0111971
rosa_laevigata RLG00000017942
rosa_multiflora Rmu_sc0005518.1_g000004
rosa_roxburghii Rroxscaffold_2G00131910
rosa_rugosa Rorug02G0177600 Rorug02G0177700
rosa_samantha Rh2AG229900 Rh2BG242700 Rh2CG234000 Rh2DG237700
rosa_wichuraiana Rw2G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 720
AccII CGCG 1 cut(s) 588
AciI CCGC 3 cut(s) 42, 586, 630
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 3 cut(s) 187, 207, 403
AfaI GTAC 2 cut(s) 384, 683
AfiI CCNNNNNNNGG 2 cut(s) 335, 399
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 3 cut(s) 354, 487, 648
AhdI GACNNNNNGTC 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 8 cut(s) 169, 229, 246, 417, 521, 653, 774, 830
AluI AGCT 8 cut(s) 169, 229, 246, 417, 521, 653, 774, 830
Alw21I GWGCWC 3 cut(s) 231, 523, 655
Alw26I GTCTC 2 cut(s) 54, 699
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 4 cut(s) 344, 401, 582, 875
ApeKI GCWGC 5 cut(s) 626, 827, 854, 857, 860
ApoI RAATTY 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 402, 583, 875
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 5 cut(s) 98, 208, 286, 374, 809
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 3 cut(s) 231, 523, 655
Bbv12I GWGCWC 3 cut(s) 231, 523, 655
BbvI GCAGC 5 cut(s) 613, 839, 866, 869, 872
BccI CCATC 3 cut(s) 454, 706, 731
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 2 cut(s) 54, 699
BfaI CTAG 2 cut(s) 450, 659
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 6 cut(s) 627, 630, 828, 855, 858, 861
BlsI GCNGC 6 cut(s) 628, 631, 829, 856, 859, 862
Bme1390I CCNGG 1 cut(s) 865
BmeRI GACNNNNNGTC 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 3 cut(s) 402, 583, 875
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 865
BmrI ACTGGG 1 cut(s) 800
BmtI GCTAGC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 800
BoxI GACNNNNGTC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 196, 250
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 399
Bse1I ACTGG 2 cut(s) 440, 806
Bse3DI GCAATG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 196, 250
BseLI CCNNNNNNNGG 2 cut(s) 335, 399
BseMI GCAATG 1 cut(s) 621
BseNI ACTGG 2 cut(s) 440, 806
BseRI GAGGAG 2 cut(s) 297, 481
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 5 cut(s) 613, 839, 866, 869, 872
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 4 cut(s) 346, 403, 584, 877
BshNI GGYRCC 1 cut(s) 476
BsiHKAI GWGCWC 3 cut(s) 231, 523, 655
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 2 cut(s) 393, 864
BslFI GGGAC 2 cut(s) 428, 619
BslI CCNNNNNNNGG 2 cut(s) 335, 399
BsmAI GTCTC 2 cut(s) 54, 699
BsmFI GGGAC 2 cut(s) 428, 619
BsnI GGCC 4 cut(s) 346, 403, 584, 877
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 4 cut(s) 231, 479, 523, 655
Bsp143I GATC 3 cut(s) 103, 171, 703
BspACI CCGC 3 cut(s) 42, 586, 630
BspANI GGCC 4 cut(s) 346, 403, 584, 877
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 704
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 2 cut(s) 440, 806
BssECI CCNNGG 2 cut(s) 196, 250
BssMI GATC 3 cut(s) 103, 171, 703
BssT1I CCWWGG 2 cut(s) 196, 250
BstAPI GCANNNNNTGC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 586, 660
BstDEI CTNAG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 3 cut(s) 106, 174, 706
BstMAI GTCTC 2 cut(s) 54, 699
BstMBI GATC 3 cut(s) 103, 171, 703
BstMWI GCNNNNNNNGC 5 cut(s) 252, 650, 659, 824, 860
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 5 cut(s) 613, 839, 866, 869, 872
BstXI CCANNNNNNTGG 1 cut(s) 453
BsuRI GGCC 4 cut(s) 346, 403, 584, 877
BtsIMutI CAGTG 2 cut(s) 183, 211
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 586, 660
Cfr13I GGNCC 3 cut(s) 402, 583, 875
Csp6I GTAC 2 cut(s) 383, 682
CviAII CATG 3 cut(s) 34, 602, 640
CviQI GTAC 2 cut(s) 383, 682
DdeI CTNAG 1 cut(s) 100
DpnI GATC 3 cut(s) 105, 173, 705
DpnII GATC 3 cut(s) 103, 171, 703
DriI GACNNNNNGTC 1 cut(s) 751
Eam1105I GACNNNNNGTC 1 cut(s) 751
Ecl136II GAGCTC 3 cut(s) 229, 521, 653
Eco130I CCWWGG 2 cut(s) 196, 250
Eco24I GRGCYC 3 cut(s) 231, 523, 655
Eco53kI GAGCTC 3 cut(s) 229, 521, 653
Eco57I CTGAAG 3 cut(s) 187, 207, 403
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 3 cut(s) 229, 521, 653
EcoT14I CCWWGG 2 cut(s) 196, 250
EcoT38I GRGCYC 3 cut(s) 231, 523, 655
ErhI CCWWGG 2 cut(s) 196, 250
FaeI CATG 3 cut(s) 37, 605, 643
FaqI GGGAC 2 cut(s) 428, 619
FatI CATG 3 cut(s) 33, 601, 639
FauI CCCGC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 6 cut(s) 627, 630, 828, 855, 858, 861
FriOI GRGCYC 3 cut(s) 231, 523, 655
Fsp4HI GCNGC 6 cut(s) 627, 630, 828, 855, 858, 861
FspBI CTAG 2 cut(s) 450, 659
GluI GCNGC 6 cut(s) 627, 630, 828, 855, 858, 861
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 4 cut(s) 346, 403, 584, 877
HapII CCGG 2 cut(s) 393, 864
Hin1II CATG 3 cut(s) 37, 605, 643
HinfI GANTC 7 cut(s) 47, 74, 192, 436, 470, 553, 607
HpaII CCGG 2 cut(s) 393, 864
HphI GGTGA 5 cut(s) 98, 208, 286, 374, 809
Hpy166II GTNNAC 2 cut(s) 126, 721
Hpy188I TCNGA 3 cut(s) 145, 226, 703
Hpy188III TCNNGA 4 cut(s) 557, 571, 648, 734
Hpy8I GTNNAC 2 cut(s) 126, 721
HpyAV CCTTC 4 cut(s) 106, 182, 422, 832
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 6 cut(s) 209, 501, 713, 812, 827, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 650, 659, 824, 860
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 788
Hsp92II CATG 3 cut(s) 37, 605, 643
Kzo9I GATC 3 cut(s) 103, 171, 703
LmnI GCTCC 3 cut(s) 234, 251, 518
LpnPI CCDG 9 cut(s) 321, 360, 406, 453, 621, 699, 819, 877, 891
Lsp1109I GCAGC 5 cut(s) 613, 839, 866, 869, 872
MaeI CTAG 2 cut(s) 450, 659
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 2 cut(s) 753, 767
MalI GATC 3 cut(s) 105, 173, 705
MboI GATC 3 cut(s) 103, 171, 703
MboII GAAGA 5 cut(s) 17, 377, 437, 609, 847
MhlI GDGCHC 4 cut(s) 231, 479, 523, 655
MluCI AATT 7 cut(s) 210, 311, 355, 375, 396, 482, 729
MlyI GAGTC 3 cut(s) 56, 430, 601
MnlI CCTC 8 cut(s) 88, 92, 139, 145, 291, 318, 502, 679
MseI TTAA 2 cut(s) 285, 780
MslI CAYNNNNRTG 1 cut(s) 451
MspI CCGG 2 cut(s) 393, 864
MspR9I CCNGG 1 cut(s) 865
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 5 cut(s) 252, 650, 659, 824, 860
NciI CCSGG 1 cut(s) 865
NdeI CATATG 1 cut(s) 69
NdeII GATC 3 cut(s) 103, 171, 703
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 3 cut(s) 37, 605, 643
NlaIV GGNNCC 1 cut(s) 478
NmeAIII GCCGAG 2 cut(s) 560, 634
NmuCI GTSAC 1 cut(s) 753
PaqCI CACCTGC 1 cut(s) 704
PfeI GAWTC 4 cut(s) 74, 192, 470, 553
PkrI GCNGC 6 cut(s) 628, 631, 829, 856, 859, 862
PleI GAGTC 3 cut(s) 55, 430, 601
PpsI GAGTC 3 cut(s) 55, 430, 601
Ppu21I YACGTR 1 cut(s) 789
PshAI GACNNNNGTC 1 cut(s) 440
Psp124BI GAGCTC 3 cut(s) 231, 523, 655
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 3 cut(s) 402, 583, 875
RsaI GTAC 2 cut(s) 384, 683
RsaNI GTAC 2 cut(s) 383, 682
RseI CAYNNNNRTG 1 cut(s) 451
SacI GAGCTC 3 cut(s) 231, 523, 655
SaqAI TTAA 2 cut(s) 285, 780
SatI GCNGC 6 cut(s) 627, 630, 828, 855, 858, 861
Sau3AI GATC 3 cut(s) 103, 171, 703
Sau96I GGNCC 3 cut(s) 402, 583, 875
SchI GAGTC 3 cut(s) 56, 430, 601
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 4 cut(s) 231, 479, 523, 655
SfcI CTRYAG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 83, 893
SmoI CTYRAG 2 cut(s) 83, 893
Sse9I AATT 7 cut(s) 210, 311, 355, 375, 396, 482, 729
SsiI CCGC 3 cut(s) 42, 586, 630
SspI AATATT 1 cut(s) 884
SspMI CTAG 2 cut(s) 450, 659
SstI GAGCTC 3 cut(s) 231, 523, 655
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 2 cut(s) 196, 250
TaiI ACGT 1 cut(s) 791
TaqI TCGA 3 cut(s) 572, 733, 744
TasI AATT 7 cut(s) 210, 311, 355, 375, 396, 482, 729
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 4 cut(s) 74, 192, 470, 553
Tru1I TTAA 2 cut(s) 285, 780
Tru9I TTAA 2 cut(s) 285, 780
TscAI CASTG 2 cut(s) 190, 211
TseFI GTSAC 1 cut(s) 753
TseI GCWGC 5 cut(s) 626, 827, 854, 857, 860
Tsp45I GTSAC 1 cut(s) 753
TspDTI ATGAA 2 cut(s) 590, 848
TspRI CASTG 2 cut(s) 190, 211
XapI RAATTY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 2 cut(s) 450, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.