MD15G1315600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014206
Physical Location & Seq
Forward (+)
32281030 .. 32282312
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1315600.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGACCAGCAAGGAAAATGCAACAAAGCACAAGATATATTAGATTTTTCAGTTTTGGATTCCGGCGAGGCTACAAATTTAATCAACGACACCAATAATTGGCTGTTAAATCTGAACGATGATGATCGATGGGAGGAACCACCTAACAAAAAGAAGGGATTCGCCGGGGCTATATCAGAAGAAGAGCTGAAGATTCGAAGTGAGGTTGAAATGGAGATCGAAAAAAACTTGGAGGAAGAAATCAAAGATGGGATTTGCCATCTTGCTCTGAGATTGCAGAGGCTCTATCAACACCAAAAGGAAAGAAGAAGTGCTGCTACAAATGGAAGAAGGAGTAACAATAACAAAGCATTTTGTGAGGTTAATATTAACATAAAAATGGAAGGAGGAACCAAGATTGAAATTAAAGAGACTAAAAAACCAGCACCTGAAAGGGGTTGCCCTAATTGGACTAGTTCAGGAATATCAGAGAGAAGTTATCAACAAGTTACAAAGATGGCTTCAAATACCAAGAAGTTTGATTGGGCCAAGTCGCTGCGTTCGAGTGCTGGGCCTGCACTCGTCACTAACAAAAATAGCGGCCCACGTGAACTGGGTTGGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.91

Weight (kDa)

8.28

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26290
fragaria_vesca FvH4_1g20030
malus_domestica MD15G1315600.v1.1
prunus_persica Prupe.6G196100_v2.0.a1 Prupe.6G196100_v2.0.a1
pyrus_communis pycom15g27890
rosa_chinensis RchiOBHm_Chr2g0111971
rosa_laevigata RLG00000017942
rosa_multiflora Rmu_sc0005518.1_g000004
rosa_roxburghii Rroxscaffold_2G00131910
rosa_rugosa Rorug02G0177600 Rorug02G0177700
rosa_samantha Rh2AG229900 Rh2BG242700 Rh2CG234000 Rh2DG237700
rosa_wichuraiana Rw2G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 1 cut(s) 579
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 209
AcvI CACGTG 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 99, 434
AgsI TTSAA 3 cut(s) 209, 401, 504
AhlI ACTAGT 1 cut(s) 452
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 3 cut(s) 525, 551, 580
ApeKI GCWGC 2 cut(s) 314, 535
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 4 cut(s) 4, 525, 551, 581
AsuC2I CCSGG 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BbrPI CACGTG 1 cut(s) 587
BbvI GCAGC 2 cut(s) 301, 522
BccI CCATC 4 cut(s) 123, 242, 267, 490
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 404
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 1 cut(s) 453
BisI GCNGC 3 cut(s) 315, 536, 580
BlsI GCNGC 3 cut(s) 316, 537, 581
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 4 cut(s) 4, 525, 551, 581
BmiI GGNNCC 2 cut(s) 138, 391
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 434
Bse1I ACTGG 1 cut(s) 597
Bse8I GATNNNNATC 1 cut(s) 123
BseCI ATCGAT 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 99, 434
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 301, 522
BseYI CCCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 527, 553, 582
BshVI ATCGAT 1 cut(s) 127
BsiSI CCGG 2 cut(s) 63, 165
BslI CCNNNNNNNGG 2 cut(s) 99, 434
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 3 cut(s) 527, 553, 582
Bsp119I TTCGAA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 124, 216
BspACI CCGC 1 cut(s) 579
BspANI GGCC 3 cut(s) 527, 553, 582
BspCNI CTCAG 1 cut(s) 261
BspDI ATCGAT 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 138, 391
BspQI GCTCTTC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 597
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 124, 216
Bst6I CTCTTC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 269
BstKTI GATC 2 cut(s) 127, 219
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 124, 216
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 301, 522
Bsu15I ATCGAT 1 cut(s) 127
BsuRI GGCC 3 cut(s) 527, 553, 582
BsuTUI ATCGAT 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 555
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 4 cut(s) 4, 525, 551, 581
ClaI ATCGAT 1 cut(s) 127
CviJI RGCY 9 cut(s) 71, 103, 170, 187, 283, 500, 527, 553, 582
CviKI_1 RGCY 9 cut(s) 71, 103, 170, 187, 283, 500, 527, 553, 582
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 126, 218
DpnII GATC 2 cut(s) 124, 216
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 209
Eco72I CACGTG 1 cut(s) 587
FaiI YATR 3 cut(s) 38, 173, 374
Fnu4HI GCNGC 3 cut(s) 315, 536, 580
Fsp4HI GCNGC 3 cut(s) 315, 536, 580
FspBI CTAG 1 cut(s) 453
GluI GCNGC 3 cut(s) 315, 536, 580
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 3 cut(s) 527, 553, 582
HapII CCGG 2 cut(s) 63, 165
HinfI GANTC 3 cut(s) 59, 159, 193
HpaII CCGG 2 cut(s) 63, 165
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 114, 178, 270, 469
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 1 cut(s) 590
HpyAV CCTTC 3 cut(s) 148, 324, 377
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 21, 277, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 586
Kzo9I GATC 2 cut(s) 124, 216
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 9 cut(s) 20, 76, 178, 435, 441, 444, 534, 567, 578
Lsp1109I GCAGC 2 cut(s) 301, 522
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 3 cut(s) 335, 487, 562
MalI GATC 2 cut(s) 126, 218
MboI GATC 2 cut(s) 124, 216
MboII GAAGA 6 cut(s) 191, 194, 202, 248, 318, 339
MluCI AATT 4 cut(s) 76, 97, 402, 445
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 7 cut(s) 61, 127, 196, 226, 273, 352, 380
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 5 cut(s) 80, 107, 363, 369, 405
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 2 cut(s) 63, 165
MspR9I CCNGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 124, 216
NlaIV GGNNCC 2 cut(s) 138, 391
NmuCI GTSAC 1 cut(s) 562
NspV TTCGAA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 59, 159, 193
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 3 cut(s) 316, 537, 581
PmaCI CACGTG 1 cut(s) 587
PmlI CACGTG 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 587
PspCI CACGTG 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 138, 391
PspPI GGNCC 4 cut(s) 4, 525, 551, 581
PstNI CAGNNNCTG 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 5 cut(s) 80, 107, 363, 369, 405
SatI GCNGC 3 cut(s) 315, 536, 580
Sau3AI GATC 2 cut(s) 124, 216
Sau96I GGNCC 4 cut(s) 4, 525, 551, 581
ScrFI CCNGG 1 cut(s) 166
SetI ASST 6 cut(s) 145, 189, 207, 363, 430, 589
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 4 cut(s) 76, 97, 402, 445
SsiI CCGC 1 cut(s) 579
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 589
TaqI TCGA 4 cut(s) 127, 196, 219, 542
TasI AATT 4 cut(s) 76, 97, 402, 445
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 3 cut(s) 59, 159, 193
Tru1I TTAA 5 cut(s) 80, 107, 363, 369, 405
Tru9I TTAA 5 cut(s) 80, 107, 363, 369, 405
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 2 cut(s) 314, 535
Tsp45I GTSAC 1 cut(s) 562
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.