FvH4_1g20060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017225
Physical Location & Seq
Forward (+)
12236092 .. 12237042
951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20060.t1

Sequence Viewer

Length: 402 bp
ATGGGTTTCGGAAGAGTTCAAGTAGTGTTTGTGATCTTGGGTCTGTTGGCCACCTCTTGTTTGGCACAGTCACCCGCAGCTTCACCCAAGCTTGCACCCACCGCCGCTCCCACCACCTCACCACCCGCAGCCACACCGGCACCAACACCCACCGTGGCCGCACCTGCACCAGCACCTACTGCGACTACACCTTCACCTGCAACCTCAACTGCACCAGCAACTTCACCCGCCACGACTCCTATCTCCTCCACACCGACCTCATCCCCACCTGCACCCAGCACCGGGTCCGGGCCCGCAGCCGAGCCGGCTGCTGACGTTCCCAGCGGTGCTTACGCTCCAGGGTGGGCAGCTGTTGCTGGAACCGCTTTGGTGGGGAGCTTCTTCGCCGTCGTGTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

12.43

Weight (kDa)

5.82

Isoelectric Point (pI)

77.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 172, 205, 277
Acc36I ACCTGC 3 cut(s) 172, 205, 277
AccB1I GGYRCC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 9 cut(s) 75, 102, 105, 126, 159, 228, 294, 324, 363
AcoI YGGCCR 2 cut(s) 48, 156
AfiI CCNNNNNNNGG 3 cut(s) 281, 282, 288
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 80, 91, 350, 378
AluI AGCT 4 cut(s) 80, 91, 350, 378
AoxI GGCC 4 cut(s) 48, 156, 290, 396
ApaI GGGCCC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 77, 128, 296, 308, 347
AspS9I GGNCC 3 cut(s) 285, 290, 291
AsuC2I CCSGG 2 cut(s) 283, 289
AsuHPI GGTGA 5 cut(s) 63, 75, 111, 186, 216
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 294
BbvI GCAGC 5 cut(s) 89, 140, 295, 308, 359
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 2 cut(s) 283, 289
BfaI CTAG 1 cut(s) 400
BfuAI ACCTGC 3 cut(s) 172, 205, 277
BglI GCCNNNNNGGC 2 cut(s) 137, 305
BisI GCNGC 7 cut(s) 78, 105, 129, 159, 297, 309, 348
BlsI GCNGC 7 cut(s) 79, 106, 130, 160, 298, 310, 349
Bme1390I CCNGG 3 cut(s) 283, 289, 339
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 285, 290, 291
BmiI GGNNCC 4 cut(s) 141, 286, 292, 361
BmrFI CCNGG 3 cut(s) 283, 289, 339
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 283, 289
BsaJI CCNNGG 2 cut(s) 153, 338
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 282, 288
Bse118I RCCGGY 2 cut(s) 136, 304
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 153, 338
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 3 cut(s) 281, 282, 288
BseRI GAGGAG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 5 cut(s) 89, 140, 295, 308, 359
BseYI CCCAGC 2 cut(s) 275, 320
BsgI GTGCAG 3 cut(s) 150, 195, 255
BshFI GGCC 4 cut(s) 50, 158, 292, 398
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 4 cut(s) 137, 282, 288, 305
BslI CCNNNNNNNGG 3 cut(s) 281, 282, 288
BsnI GGCC 4 cut(s) 50, 158, 292, 398
Bsp120I GGGCCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 9 cut(s) 75, 102, 105, 126, 159, 228, 294, 324, 363
BspANI GGCC 4 cut(s) 50, 158, 292, 398
BspLI GGNNCC 4 cut(s) 141, 286, 292, 361
BspMI ACCTGC 3 cut(s) 172, 205, 277
BspT107I GGYRCC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 136, 304
BssAI RCCGGY 2 cut(s) 136, 304
BssECI CCNNGG 2 cut(s) 153, 338
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 69, 154
Bst6I CTCTTC 1 cut(s) 7
BstAPI GCANNNNNTGC 2 cut(s) 179, 353
BstC8I GCNNGC 3 cut(s) 93, 294, 306
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 7 cut(s) 101, 137, 164, 179, 305, 353, 362
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 3 cut(s) 281, 287, 337
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 5 cut(s) 89, 140, 295, 308, 359
BsuRI GGCC 4 cut(s) 50, 158, 292, 398
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 260
BveI ACCTGC 3 cut(s) 172, 205, 277
Cac8I GCNNGC 3 cut(s) 93, 294, 306
Cfr10I RCCGGY 2 cut(s) 136, 304
Cfr13I GGNCC 3 cut(s) 285, 290, 291
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 2 cut(s) 48, 156
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 294
FauI CCCGC 4 cut(s) 82, 133, 235, 301
Fnu4HI GCNGC 7 cut(s) 78, 105, 129, 159, 297, 309, 348
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 78, 105, 129, 159, 297, 309, 348
FspBI CTAG 1 cut(s) 400
GluI GCNGC 7 cut(s) 78, 105, 129, 159, 297, 309, 348
GsaI CCCAGC 2 cut(s) 279, 324
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 4 cut(s) 50, 158, 292, 398
HapII CCGG 4 cut(s) 137, 282, 288, 305
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 235
HpaII CCGG 4 cut(s) 137, 282, 288, 305
HphI GGTGA 5 cut(s) 63, 75, 111, 186, 216
Hpy188I TCNGA 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 69, 154
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 95, 167, 200, 212, 272
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 137, 164, 179, 305, 353, 362
HpySE526I ACGT 1 cut(s) 315
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 112, 340, 375
Lsp1109I GCAGC 5 cut(s) 89, 140, 295, 308, 359
MaeI CTAG 1 cut(s) 400
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 107
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 24, 373
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 5 cut(s) 64, 127, 214, 256, 268
Mox20I TGGCCA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 324, 350
MspI CCGG 4 cut(s) 137, 282, 288, 305
MspR9I CCNGG 3 cut(s) 283, 289, 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 7 cut(s) 101, 137, 164, 179, 305, 353, 362
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 2 cut(s) 283, 289
NdeII GATC 1 cut(s) 33
NgoMIV GCCGGC 1 cut(s) 304
NlaIV GGNNCC 4 cut(s) 141, 286, 292, 361
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 69
PaqCI CACCTGC 3 cut(s) 172, 205, 277
PdiI GCCGGC 1 cut(s) 306
PkrI GCNGC 7 cut(s) 79, 106, 130, 160, 298, 310, 349
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 2 cut(s) 275, 320
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 4 cut(s) 141, 286, 292, 361
PspOMI GGGCCC 1 cut(s) 290
PspPI GGNCC 3 cut(s) 285, 290, 291
PvuII CAGCTG 1 cut(s) 350
SatI GCNGC 7 cut(s) 78, 105, 129, 159, 297, 309, 348
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 3 cut(s) 285, 290, 291
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 3 cut(s) 283, 289, 339
SduI GDGCHC 1 cut(s) 294
SinI GGWCC 1 cut(s) 285
SsiI CCGC 9 cut(s) 75, 102, 105, 126, 159, 228, 294, 324, 363
SspMI CTAG 1 cut(s) 400
StyD4I CCNGG 3 cut(s) 281, 287, 337
TaaI ACNGT 2 cut(s) 69, 154
TaiI ACGT 1 cut(s) 318
TauI GCSGC 2 cut(s) 107, 161
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 5 cut(s) 77, 128, 296, 308, 347
Tsp45I GTSAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.