MD01G1032700.v1.1

arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017225
Physical Location & Seq
Forward (+)
11379739 .. 11380176
438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1032700.v1.1.491

Sequence Viewer

Length: 438 bp
ATGAAGATGGATTTTGCAGGGTTCCAAGTTTTGATGGTTTTGTGTCTGTTGGCCACATCATGCATAGCCCAAGCCCCAGGAGCTGCACCCACAGCCTCACCCCCAACCGCAAAGTCGCCAACCGCCACCCCACCAACCGCCACACCGCCATCAGCCGTACCAGTTCCATCACCCAGCAAAACACCAACCGCGTCACCAACTCCATCACCAGTGACAGCACCAACCCCAAGTGCCTCCCCACCAGCTTCCACACCAGCTTCCACCCCAGCTTCCACTCCAGCAGCTAAGTCTCCATCATCGTCAGCTGCTCCCTCAGGCTCAAGCCCGAACTCCCCACCGGCTGACGCTCTTCCTCCAAGTGGCACCTCCGCCATCAGCCGCGTTGCTATTGCTGGAACTGCTCTTGCTGGAGTTTTCTTCGCGGTTGTGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

13.7

Weight (kDa)

9.3

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 3 cut(s) 191, 381, 422
AciI CCGC 8 cut(s) 108, 123, 138, 146, 189, 369, 379, 422
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 359
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 6 cut(s) 83, 245, 257, 269, 284, 305
AluI AGCT 6 cut(s) 83, 245, 257, 269, 284, 305
Alw26I GTCTC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 83, 281, 305
AsuHPI GGTGA 4 cut(s) 90, 162, 186, 198
AxyI CCTNAGG 1 cut(s) 313
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 70, 292, 293
BccI CCATC 6 cut(s) 28, 157, 175, 211, 301, 380
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 294
BisI GCNGC 4 cut(s) 84, 282, 306, 379
BlsI GCNGC 4 cut(s) 85, 283, 307, 380
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 23, 364
BmrFI CCNGG 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 261, 429
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 161, 209
Bse21I CCTNAGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 161, 209
BseXI GCAGC 3 cut(s) 70, 292, 293
BseYI CCCAGC 2 cut(s) 173, 265
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 3 cut(s) 191, 381, 422
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 53
BspACI CCGC 8 cut(s) 108, 123, 138, 146, 189, 369, 379, 422
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 326
BspFNI CGCG 3 cut(s) 191, 381, 422
BspLI GGNNCC 2 cut(s) 23, 364
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 2 cut(s) 161, 209
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 285, 313, 435
BstFNI CGCG 3 cut(s) 191, 381, 422
BstMAI GTCTC 1 cut(s) 294
BstMWI GCNNNNNNNGC 3 cut(s) 80, 92, 398
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 3 cut(s) 191, 381, 422
BstV1I GCAGC 3 cut(s) 70, 292, 293
Bsu36I CCTNAGG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 337
CseI GACGC 2 cut(s) 180, 353
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 60
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 3 cut(s) 285, 313, 435
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 65
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 65
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 84, 282, 306, 379
Fsp4HI GCNGC 4 cut(s) 84, 282, 306, 379
GluI GCNGC 4 cut(s) 84, 282, 306, 379
GsaI CCCAGC 2 cut(s) 177, 269
GsuI CTGGAG 2 cut(s) 261, 429
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 338
HgaI GACGC 2 cut(s) 180, 353
Hin1II CATG 1 cut(s) 63
HpaII CCGG 1 cut(s) 338
HphI GGTGA 4 cut(s) 90, 162, 186, 198
HpyCH4V TGCA 3 cut(s) 17, 63, 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 92, 398
HpyF3I CTNAG 3 cut(s) 285, 313, 435
Hsp92II CATG 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 80, 313
Lsp1109I GCAGC 3 cut(s) 70, 292, 293
MaeIII GTNAC 2 cut(s) 192, 211
MboII GAAGA 3 cut(s) 16, 341, 409
MlsI TGGCCA 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 5 cut(s) 106, 244, 322, 363, 376
Mox20I TGGCCA 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 65
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 3 cut(s) 191, 381, 422
MwoI GCNNNNNNNGC 3 cut(s) 80, 92, 398
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 23, 364
NmuCI GTSAC 2 cut(s) 192, 211
NsiI ATGCAT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 85, 283, 307, 380
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 2 cut(s) 173, 265
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 23, 364
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 4 cut(s) 84, 282, 306, 379
ScrFI CCNGG 1 cut(s) 78
SetI ASST 7 cut(s) 85, 247, 259, 271, 286, 307, 368
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SsiI CCGC 8 cut(s) 108, 123, 138, 146, 189, 369, 379, 422
StyD4I CCNGG 1 cut(s) 76
TauI GCSGC 1 cut(s) 381
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 2 cut(s) 192, 211
TseI GCWGC 3 cut(s) 83, 281, 305
Tsp45I GTSAC 2 cut(s) 192, 211
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.