pycom15g27930

arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017225
Physical Location & Seq
Forward (+)
23528970 .. 23538746
9777 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27930.2

Sequence Viewer

Length: 795 bp
ATGGAGGAGAAGCGATGCTTTGGCGTCGTCGAGGCCAGAACCGACGTCGAGGATCGCCCCCAATCCCAGGTTGAGATCTTGAGGGATAGAAGAGATCTTGTTTTGGGGATTAGGGTTTTTGCAACGGGTGGAGATGAAGAGGGTGAAGGAGAGAGAAGGAGAGGAGTGAATGGGTGGGTGCAAAGGAGAGAAGGAAGGGAGAAGGGAGGCAGGGGGTGGTGGGGATGGAAAGGCCGCATTATTGAATTTGTAACGCTGTCCCTCAGCACCCCCCCCACTTTCTCTCCAACCTTTTTATATTCCCCTCTCCTTTTGAAACCCCCTCACTCCCACATCTCTGAAACTCCTTCTCTCCCTCTCACTCATCAAATTCTCTCTCTTTCTCTCTCTAAAAATGAAGATGGGTTTTGCAGGGTTCCAACCCAGGCCCCAGGAGCTGCACCCACAGCCTCACCCCCAACCGCCACGCCGCCAACGGCCACCCCACCAACGGCCACCCCACCAACCGCCACACCGCCATCAGCCGTACCAGTTCCATCACCCAGCAAAACACCAACCGTGTCACCAACTCCATCACCAGTGACAGCACCAACCCCAAGTGCCTCCCCACCAGCTTCCACACCAGCTTCCACACCATCTGCTGAGTCTCCGTCGTCCCCACCTGCTCCCTCTGGCGCAAGCCCGAACTCCCCACCGGCAGAGGCTCTTCCTCCAAGTGGCACCTCCGCCATCAGCCGCGTTGTTATTGCTGGAACTGCTCTTGCTGGAGTCTTCTTCGCCGTTGTGTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

27.42

Weight (kDa)

7.83

Isoelectric Point (pI)

77.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
AatII GACGTC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 670
AccB1I GGYRCC 1 cut(s) 719
AccII CGCG 1 cut(s) 738
AciI CCGC 7 cut(s) 235, 462, 470, 507, 515, 726, 736
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 2 cut(s) 477, 492
AcsI RAATTY 2 cut(s) 245, 369
AcyI GRCGYC 2 cut(s) 24, 45
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 3 cut(s) 67, 490, 716
AgsI TTSAA 2 cut(s) 245, 316
AjnI CCWGG 3 cut(s) 66, 423, 430
AluBI AGCT 3 cut(s) 437, 614, 626
AluI AGCT 3 cut(s) 437, 614, 626
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 5 cut(s) 33, 232, 426, 477, 492
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 245, 369
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 5 cut(s) 155, 444, 531, 555, 567
BanI GGYRCC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 763
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 424
BccI CCATC 7 cut(s) 219, 395, 526, 544, 580, 643, 737
BceAI ACGGC 4 cut(s) 492, 507, 509, 764
BciT130I CCWGG 3 cut(s) 68, 425, 432
BcoDI GTCTC 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 670
BglII AGATCT 2 cut(s) 75, 94
BisI GCNGC 4 cut(s) 235, 438, 470, 736
BlsI GCNGC 4 cut(s) 236, 439, 471, 737
Bme1390I CCNGG 3 cut(s) 68, 425, 432
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 417, 429, 721
BmrFI CCNGG 3 cut(s) 68, 425, 432
BmsI GCATC 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 763
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 100
BsaHI GRCGYC 2 cut(s) 24, 45
BsaJI CCNNGG 3 cut(s) 66, 423, 430
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 490, 716
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 2 cut(s) 530, 578
BseBI CCWGG 3 cut(s) 68, 425, 432
BseDI CCNNGG 3 cut(s) 66, 423, 430
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 3 cut(s) 67, 490, 716
BseMII CTCAG 2 cut(s) 277, 633
BseNI ACTGG 2 cut(s) 530, 578
BseRI GAGGAG 2 cut(s) 20, 177
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 5 cut(s) 35, 234, 428, 479, 494
BshNI GGYRCC 1 cut(s) 719
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 2 cut(s) 244, 640
BslI CCNNNNNNNGG 3 cut(s) 67, 490, 716
BsmAI GTCTC 1 cut(s) 651
BsmFI GGGAC 2 cut(s) 244, 640
BsnI GGCC 5 cut(s) 35, 234, 428, 479, 494
Bsp143I GATC 3 cut(s) 52, 75, 94
BspACI CCGC 7 cut(s) 235, 462, 470, 507, 515, 726, 736
BspANI GGCC 5 cut(s) 35, 234, 428, 479, 494
BspCNI CTCAG 2 cut(s) 276, 634
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 417, 429, 721
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 694
BsrI ACTGG 2 cut(s) 530, 578
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 66, 423, 430
BssMI GATC 3 cut(s) 52, 75, 94
BssNI GRCGYC 2 cut(s) 24, 45
Bst2UI CCWGG 3 cut(s) 68, 425, 432
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 3 cut(s) 85, 132, 711
BstACI GRCGYC 2 cut(s) 24, 45
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 3 cut(s) 263, 642, 792
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 3 cut(s) 55, 78, 97
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 3 cut(s) 52, 75, 94
BstMWI GCNNNNNNNGC 3 cut(s) 434, 446, 755
BstNI CCWGG 3 cut(s) 68, 425, 432
BstSCI CCNGG 3 cut(s) 66, 423, 430
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 763
BstX2I RGATCY 2 cut(s) 75, 94
BstYI RGATCY 2 cut(s) 75, 94
BsuRI GGCC 5 cut(s) 35, 234, 428, 479, 494
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 679
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 527
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 3 cut(s) 263, 642, 792
DpnI GATC 3 cut(s) 54, 77, 96
DpnII GATC 3 cut(s) 52, 75, 94
EaeI YGGCCR 2 cut(s) 477, 492
Eam1104I CTCTTC 3 cut(s) 85, 132, 711
EarI CTCTTC 3 cut(s) 85, 132, 711
EciI GGCGGA 1 cut(s) 715
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 66, 423, 430
FaiI YATR 1 cut(s) 298
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 2 cut(s) 244, 640
Fnu4HI GCNGC 4 cut(s) 235, 438, 470, 736
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 4 cut(s) 235, 438, 470, 736
GlaI GCGC 1 cut(s) 676
GluI GCNGC 4 cut(s) 235, 438, 470, 736
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 5 cut(s) 35, 234, 428, 479, 494
HapII CCGG 1 cut(s) 695
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 677
Hin1I GRCGYC 2 cut(s) 24, 45
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 2 cut(s) 644, 768
HpaII CCGG 1 cut(s) 695
HphI GGTGA 5 cut(s) 155, 444, 531, 555, 567
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 79
Hpy99I CGWCG 5 cut(s) 29, 32, 47, 50, 655
HpyAV CCTTC 6 cut(s) 140, 150, 185, 189, 196, 357
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 122, 181, 411, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 446, 755
HpyF3I CTNAG 3 cut(s) 263, 642, 792
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 24, 45
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 3 cut(s) 52, 75, 94
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 2 cut(s) 434, 670
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 5
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 250, 561, 580
MalI GATC 3 cut(s) 54, 77, 96
MboI GATC 3 cut(s) 52, 75, 94
MboII GAAGA 6 cut(s) 102, 149, 410, 698, 763, 766
MflI RGATCY 2 cut(s) 75, 94
MluCI AATT 2 cut(s) 245, 369
MlyI GAGTC 2 cut(s) 653, 777
MmeI TCCRAC 2 cut(s) 311, 443
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 3 cut(s) 68, 425, 432
MvaI CCWGG 3 cut(s) 68, 425, 432
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 434, 446, 755
NdeII GATC 3 cut(s) 52, 75, 94
NlaIV GGNNCC 3 cut(s) 417, 429, 721
NmuCI GTSAC 2 cut(s) 561, 580
PaqCI CACCTGC 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 711
PkrI GCNGC 4 cut(s) 236, 439, 471, 737
PleI GAGTC 2 cut(s) 652, 776
PpsI GAGTC 2 cut(s) 652, 776
Psp6I CCWGG 3 cut(s) 66, 423, 430
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 3 cut(s) 66, 423, 430
PspN4I GGNNCC 3 cut(s) 417, 429, 721
PspPI GGNCC 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 75, 94
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 711
SatI GCNGC 4 cut(s) 235, 438, 470, 736
Sau3AI GATC 3 cut(s) 52, 75, 94
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 2 cut(s) 653, 777
ScrFI CCNGG 3 cut(s) 68, 425, 432
SetI ASST 8 cut(s) 48, 72, 293, 439, 616, 628, 664, 725
SfaNI GCATC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 2 cut(s) 245, 369
SsiI CCGC 7 cut(s) 235, 462, 470, 507, 515, 726, 736
StyD4I CCNGG 3 cut(s) 66, 423, 430
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 30, 48
TasI AATT 2 cut(s) 245, 369
TauI GCSGC 3 cut(s) 237, 472, 738
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 561, 580
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 2 cut(s) 561, 580
TspDTI ATGAA 2 cut(s) 150, 411
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 1 cut(s) 585
XapI RAATTY 2 cut(s) 245, 369
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.