Prupe.6G195800_v2.0.a1

arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017225
Physical Location & Seq
Reverse (-)
20339198 .. 20340660
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G195800.1

Sequence Viewer

Length: 447 bp
ATGAAGATGGGTTTTGCTGGGTTTCAAGTTCTCTTGGTCTTGGGTCTCTTGGCTACATCATGCATAGCCCAAGCCCCGTCCGCCGCACCCACCGCCACACCACCAACCGCAACACCACCAACCGCAAAGCCACCAACCGCAACACCACCCACAGCCAACCCTCCATCCCCCGCACCAGTCCCGGCACCTACCACGTCACCAACTCCATCTCCAACCACAGCCCCAGCTCCAAGCACCACAGCGCCAGCCTCCTCCCCCTCAGCCGAGACACCGCCTTCAACTTCTCCACCTGCACCCGCGGGCCCAGCCGGCAGCCCGAACTCCCCAACTGCCGAAACCCCATCTCCTCCTCCTCCCAGTGGGAACTACGCTCCTGGATTGGCCAGCCGCGCTGCTATTGCCGGAACTGCTCTCGCCGGAGCCCTGTTTGCCGTTGTGTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

13.9

Weight (kDa)

7.93

Isoelectric Point (pI)

86.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 2 cut(s) 299, 390
AcoI YGGCCR 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 26, 279
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 50, 260
AoxI GGCC 2 cut(s) 301, 381
ApaI GGGCCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 312, 392
AspLEI GCGC 2 cut(s) 244, 392
AspS9I GGNCC 2 cut(s) 301, 302
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 305, 424
BbvCI CCTCAGC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 324, 379
BccI CCATC 3 cut(s) 172, 214, 349
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 50, 260
BfoI RGCGCY 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 4 cut(s) 84, 313, 388, 393
BlsI GCNGC 4 cut(s) 85, 314, 389, 394
Bme1390I CCNGG 2 cut(s) 182, 375
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 301, 302
BmiI GGNNCC 3 cut(s) 186, 303, 421
BmrFI CCNGG 2 cut(s) 182, 375
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 176, 357
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 176, 357
BseRI GAGGAG 4 cut(s) 241, 336, 339, 342
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 324, 379
BseYI CCCAGC 3 cut(s) 17, 223, 304
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 299, 390
BshFI GGCC 2 cut(s) 303, 383
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 4 cut(s) 182, 309, 402, 417
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 50, 260
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 303, 383
Bso31I GGTCTC 1 cut(s) 50
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 305, 424
BspANI GGCC 2 cut(s) 303, 383
BspCNI CTCAG 1 cut(s) 272
BspFNI CGCG 2 cut(s) 299, 390
BspLI GGNNCC 3 cut(s) 186, 303, 421
BspMI ACCTGC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 176, 357
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 246, 301, 310, 385
BstDEI CTNAG 1 cut(s) 259
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 164
BstFNI CGCG 2 cut(s) 299, 390
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 244, 392
BstMAI GTCTC 2 cut(s) 50, 260
BstMWI GCNNNNNNNGC 8 cut(s) 80, 92, 305, 309, 389, 398, 407, 428
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 180, 373
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 2 cut(s) 299, 390
BstV1I GCAGC 2 cut(s) 324, 379
BsuRI GGCC 2 cut(s) 303, 383
BtgI CCRYGG 1 cut(s) 297
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 246, 301, 310, 385
CfoI GCGC 2 cut(s) 244, 392
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 301, 302
Cfr42I CCGCGG 1 cut(s) 300
CviAII CATG 1 cut(s) 60
DdeI CTNAG 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 381
EciI GGCGGA 1 cut(s) 70
Eco24I GRGCYC 2 cut(s) 305, 424
Eco31I GGTCTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 305, 424
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 65
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 59
FauI CCCGC 3 cut(s) 178, 292, 304
Fnu4HI GCNGC 4 cut(s) 84, 313, 388, 393
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 2 cut(s) 305, 424
Fsp4HI GCNGC 4 cut(s) 84, 313, 388, 393
GlaI GCGC 2 cut(s) 243, 391
GluI GCNGC 4 cut(s) 84, 313, 388, 393
GsaI CCCAGC 3 cut(s) 21, 227, 308
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 2 cut(s) 303, 383
HapII CCGG 4 cut(s) 182, 309, 402, 417
HhaI GCGC 2 cut(s) 244, 392
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 2 cut(s) 242, 390
HinP1I GCGC 2 cut(s) 242, 390
HpaII CCGG 4 cut(s) 182, 309, 402, 417
HphI GGTGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 63, 293
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 92, 305, 309, 389, 398, 407, 428
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 2 cut(s) 242, 390
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
KspI CCGCGG 1 cut(s) 300
LmnI GCTCC 3 cut(s) 232, 376, 419
Lsp1109I GCAGC 2 cut(s) 324, 379
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 195
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 305, 424
MlsI TGGCCA 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 7 cut(s) 171, 259, 262, 268, 357, 360, 363
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 383
MseI TTAA 1 cut(s) 445
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 4 cut(s) 182, 309, 402, 417
MspR9I CCNGG 2 cut(s) 182, 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 2 cut(s) 299, 390
MwoI GCNNNNNNNGC 8 cut(s) 80, 92, 305, 309, 389, 398, 407, 428
NaeI GCCGGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 3 cut(s) 186, 303, 421
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 298
PdiI GCCGGC 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 4 cut(s) 85, 314, 389, 394
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 3 cut(s) 17, 223, 304
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 186, 303, 421
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 301, 302
SacII CCGCGG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 4 cut(s) 84, 313, 388, 393
Sau96I GGNCC 2 cut(s) 301, 302
ScrFI CCNGG 2 cut(s) 182, 375
SduI GDGCHC 2 cut(s) 305, 424
SetI ASST 4 cut(s) 190, 197, 229, 292
Sfr303I CCGCGG 1 cut(s) 300
SgrBI CCGCGG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 180, 373
TaiI ACGT 1 cut(s) 197
TauI GCSGC 2 cut(s) 86, 390
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 2 cut(s) 312, 392
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.