Rw2G017830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017225
Physical Location & Seq
Forward (+)
22255546 .. 22256845
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017830.1

Sequence Viewer

Length: 438 bp
ATGGGTTTCGCCAGAATTCAAGTGTTCGTGATCTTGGGTCTGTTGGCCACCTCGTGTTTGGCTCAGTCACCCGCAGCAGCACCCAAACTCGCACCAACCGCCGCTCCCACCACCTCACCACCCGCAGCCACACCGGCCCCGGCACCCACTACAGCCGCACCTGCACCCACTACAGCCGCACCTGCACCCAGTGCAACTACGCCCTCACCAGCATCCACTGCAACTCCACCAGCATCTTCACCCTCCACGACTCCCGCGTCCACACCAGAGTCCTCCACCCCAACGTCCTCACCACCTTCACCCACCGCAGGTGAGCCCACTTCCGGGCCCGCTGGAGAGCCAGCAGCTGAGGTTCCCAGCGGTGCCTCCGCTCCACGGTGGGCAGCTGTTGCTGGAACCGCTTTGGTGGGGAGCTTCTTCGCCGTCGTGTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

13.56

Weight (kDa)

4.94

Isoelectric Point (pI)

83.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 169, 190, 299
AasI GACNNNNNNGTC 1 cut(s) 256
Acc36I ACCTGC 3 cut(s) 169, 190, 299
AccB1I GGYRCC 2 cut(s) 142, 362
AccBSI CCGCTC 2 cut(s) 104, 371
AccII CGCG 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 15
AdeI CACNNNGTG 2 cut(s) 54, 191
AfiI CCNNNNNNNGG 4 cut(s) 308, 323, 324, 375
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 3 cut(s) 347, 386, 414
AluI AGCT 3 cut(s) 347, 386, 414
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 4 cut(s) 45, 135, 326, 432
ApaI GGGCCC 1 cut(s) 330
ApeKI GCWGC 5 cut(s) 74, 77, 125, 344, 383
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 136, 326, 327
AsuC2I CCSGG 2 cut(s) 140, 325
AsuHPI GGTGA 7 cut(s) 60, 108, 198, 231, 282, 291, 323
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 2 cut(s) 142, 362
BanII GRGCYC 2 cut(s) 318, 330
BauI CACGAG 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 5 cut(s) 86, 89, 137, 356, 395
BceAI ACGGC 1 cut(s) 407
BcnI CCSGG 2 cut(s) 140, 325
BfaI CTAG 1 cut(s) 436
BfmI CTRYAG 2 cut(s) 150, 171
BfuAI ACCTGC 3 cut(s) 169, 190, 299
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 8 cut(s) 75, 78, 102, 126, 156, 177, 345, 384
BlsI GCNGC 8 cut(s) 76, 79, 103, 127, 157, 178, 346, 385
Bme1390I CCNGG 2 cut(s) 140, 325
BmgT120I GGNCC 3 cut(s) 136, 326, 327
BmiI GGNNCC 6 cut(s) 138, 144, 328, 354, 364, 397
BmrFI CCNGG 2 cut(s) 140, 325
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 221, 242
BmuI ACTGGG 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 348
BpuMI CCSGG 2 cut(s) 140, 325
BsaJI CCNNGG 2 cut(s) 138, 374
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 208, 238
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 323, 324, 375
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 138, 374
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 4 cut(s) 308, 323, 324, 375
BseMII CTCAG 2 cut(s) 77, 339
BseNI ACTGG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 5 cut(s) 86, 89, 137, 356, 395
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 147, 168
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 4 cut(s) 47, 137, 328, 434
BshNI GGYRCC 2 cut(s) 142, 362
BsiSI CCGG 3 cut(s) 134, 140, 324
BslI CCNNNNNNNGG 4 cut(s) 308, 323, 324, 375
BsnI GGCC 4 cut(s) 47, 137, 328, 434
Bsp120I GGGCCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 318, 330
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 4 cut(s) 47, 137, 328, 434
BspCNI CTCAG 2 cut(s) 76, 340
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 6 cut(s) 138, 144, 328, 354, 364, 397
BspMI ACCTGC 3 cut(s) 169, 190, 299
BspT107I GGYRCC 2 cut(s) 142, 362
BsrBI CCGCTC 2 cut(s) 104, 371
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 138, 374
BssMI GATC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 378
BstAPI GCANNNNNTGC 3 cut(s) 191, 218, 389
BstC8I GCNNGC 2 cut(s) 330, 342
BstDEI CTNAG 2 cut(s) 63, 348
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 8 cut(s) 98, 134, 161, 182, 191, 218, 389, 398
BstSCI CCNGG 2 cut(s) 138, 323
BstSFI CTRYAG 2 cut(s) 150, 171
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 5 cut(s) 86, 89, 137, 356, 395
BsuRI GGCC 4 cut(s) 47, 137, 328, 434
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 196, 216
BveI ACCTGC 3 cut(s) 169, 190, 299
Cac8I GCNNGC 2 cut(s) 330, 342
CaiI CAGNNNCTG 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 136, 326, 327
CseI GACGC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 63, 348
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 2 cut(s) 54, 191
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 318, 330
EcoRI GAATTC 1 cut(s) 15
EcoT38I GRGCYC 2 cut(s) 318, 330
FauI CCCGC 4 cut(s) 79, 130, 262, 337
Fnu4HI GCNGC 8 cut(s) 75, 78, 102, 126, 156, 177, 345, 384
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 318, 330
Fsp4HI GCNGC 8 cut(s) 75, 78, 102, 126, 156, 177, 345, 384
FspBI CTAG 1 cut(s) 436
GluI GCNGC 8 cut(s) 75, 78, 102, 126, 156, 177, 345, 384
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 4 cut(s) 47, 137, 328, 434
HapII CCGG 3 cut(s) 134, 140, 324
HgaI GACGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 250, 269
HpaII CCGG 3 cut(s) 134, 140, 324
HphI GGTGA 7 cut(s) 60, 108, 198, 231, 282, 291, 323
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 164, 185, 194, 221
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 134, 161, 182, 191, 218, 389, 398
HpyF3I CTNAG 2 cut(s) 63, 348
HpySE526I ACGT 1 cut(s) 284
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 3 cut(s) 109, 376, 411
Lsp1109I GCAGC 5 cut(s) 86, 89, 137, 356, 395
LweI GCATC 2 cut(s) 221, 242
MaeI CTAG 1 cut(s) 436
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 32
MbiI CCGCTC 2 cut(s) 104, 371
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 228, 409
MhlI GDGCHC 2 cut(s) 318, 330
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 2 cut(s) 244, 278
MnlI CCTC 8 cut(s) 61, 124, 214, 253, 283, 298, 343, 376
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 4 cut(s) 332, 347, 360, 386
MspI CCGG 3 cut(s) 134, 140, 324
MspR9I CCNGG 2 cut(s) 140, 325
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 8 cut(s) 98, 134, 161, 182, 191, 218, 389, 398
NciI CCSGG 2 cut(s) 140, 325
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 6 cut(s) 138, 144, 328, 354, 364, 397
NmuCI GTSAC 1 cut(s) 66
PaqCI CACCTGC 3 cut(s) 169, 190, 299
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PkrI GCNGC 8 cut(s) 76, 79, 103, 127, 157, 178, 346, 385
PleI GAGTC 2 cut(s) 244, 277
PpsI GAGTC 2 cut(s) 244, 277
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 6 cut(s) 138, 144, 328, 354, 364, 397
PspOMI GGGCCC 1 cut(s) 326
PspPI GGNCC 3 cut(s) 136, 326, 327
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 347, 386
SatI GCNGC 8 cut(s) 75, 78, 102, 126, 156, 177, 345, 384
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 136, 326, 327
SchI GAGTC 2 cut(s) 244, 278
ScrFI CCNGG 2 cut(s) 140, 325
SduI GDGCHC 2 cut(s) 318, 330
SfaNI GCATC 2 cut(s) 221, 242
SfcI CTRYAG 2 cut(s) 150, 171
Sse9I AATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 138, 323
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 1 cut(s) 287
TasI AATT 1 cut(s) 15
TauI GCSGC 3 cut(s) 104, 158, 179
TscAI CASTG 2 cut(s) 196, 223
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 5 cut(s) 74, 77, 125, 344, 383
Tsp45I GTSAC 1 cut(s) 66
TspRI CASTG 2 cut(s) 196, 223
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.