Rh2CG234500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017225
Physical Location & Seq
Forward (+)
24078178 .. 24079829
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG234500.1

Sequence Viewer

Length: 417 bp
ATGGGTTTCGCCAGAATTCAAGTGTTCGTGATCTTGGGTCTGTTGGCCACCTCGTGTTTGGCTCAGTCACCCGCAGCAGCACCCAAACTCGCACCAACCGCCGCTCCCACCACCTCACCACCCGCAGCCACACCGGCCCCGGCACCCACTACAGCCGCACCTGCACCCAGTGCAACTACGCCCTCACCAGCATCCACTGCAACTCCACCAGCATCTTCACCCTCCACGACTCCCGCGTCCACACCAGAGTCCTCCACCCCAACGTCCTCGCCACCTTCACCCACCGCAGGTGAGCCCACTTCCGGGCCCGCTGGAGAGCCAGCAGCTGAGGTTCCCAGCGGTGCCTCCTCTCCACGGTGGGCAGCTGTTGCTGGAACCGCTTTGGTGGGGAGCTTCTTCGCCGTCGTGTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

12.97

Weight (kDa)

4.94

Isoelectric Point (pI)

86.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 169, 278
AasI GACNNNNNNGTC 1 cut(s) 235
Acc36I ACCTGC 2 cut(s) 169, 278
AccB1I GGYRCC 2 cut(s) 142, 341
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 15
AdeI CACNNNGTG 2 cut(s) 54, 170
AfiI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 354
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 3 cut(s) 326, 365, 393
AluI AGCT 3 cut(s) 326, 365, 393
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 45, 135, 305, 411
ApaI GGGCCC 1 cut(s) 309
ApeKI GCWGC 5 cut(s) 74, 77, 125, 323, 362
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 136, 305, 306
AsuC2I CCSGG 2 cut(s) 140, 304
AsuHPI GGTGA 6 cut(s) 60, 108, 177, 210, 270, 302
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 2 cut(s) 142, 341
BanII GRGCYC 2 cut(s) 297, 309
BauI CACGAG 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 5 cut(s) 86, 89, 137, 335, 374
BceAI ACGGC 1 cut(s) 386
BcnI CCSGG 2 cut(s) 140, 304
BfaI CTAG 1 cut(s) 415
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 2 cut(s) 169, 278
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 7 cut(s) 75, 78, 102, 126, 156, 324, 363
BlsI GCNGC 7 cut(s) 76, 79, 103, 127, 157, 325, 364
Bme1390I CCNGG 2 cut(s) 140, 304
BmgT120I GGNCC 3 cut(s) 136, 305, 306
BmiI GGNNCC 6 cut(s) 138, 144, 307, 333, 343, 376
BmrFI CCNGG 2 cut(s) 140, 304
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 200, 221
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 327
BpuMI CCSGG 2 cut(s) 140, 304
BsaJI CCNNGG 2 cut(s) 138, 353
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 187, 217
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 302, 303, 354
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 138, 353
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 354
BseMII CTCAG 2 cut(s) 77, 318
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 5 cut(s) 86, 89, 137, 335, 374
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 4 cut(s) 47, 137, 307, 413
BshNI GGYRCC 2 cut(s) 142, 341
BsiSI CCGG 3 cut(s) 134, 140, 303
BslI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 354
BsnI GGCC 4 cut(s) 47, 137, 307, 413
Bsp120I GGGCCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 297, 309
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 4 cut(s) 47, 137, 307, 413
BspCNI CTCAG 2 cut(s) 76, 319
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 6 cut(s) 138, 144, 307, 333, 343, 376
BspMI ACCTGC 2 cut(s) 169, 278
BspT107I GGYRCC 2 cut(s) 142, 341
BsrBI CCGCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 138, 353
BssMI GATC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 357
BstAPI GCANNNNNTGC 3 cut(s) 170, 197, 368
BstC8I GCNNGC 2 cut(s) 309, 321
BstDEI CTNAG 2 cut(s) 63, 327
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 368, 377
BstSCI CCNGG 2 cut(s) 138, 302
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 5 cut(s) 86, 89, 137, 335, 374
BsuRI GGCC 4 cut(s) 47, 137, 307, 413
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 175, 195
BveI ACCTGC 2 cut(s) 169, 278
Cac8I GCNNGC 2 cut(s) 309, 321
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 136, 305, 306
CseI GACGC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 63, 327
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 2 cut(s) 54, 170
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 297, 309
EcoRI GAATTC 1 cut(s) 15
EcoT38I GRGCYC 2 cut(s) 297, 309
FauI CCCGC 4 cut(s) 79, 130, 241, 316
Fnu4HI GCNGC 7 cut(s) 75, 78, 102, 126, 156, 324, 363
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 2 cut(s) 297, 309
Fsp4HI GCNGC 7 cut(s) 75, 78, 102, 126, 156, 324, 363
FspBI CTAG 1 cut(s) 415
GluI GCNGC 7 cut(s) 75, 78, 102, 126, 156, 324, 363
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 4 cut(s) 47, 137, 307, 413
HapII CCGG 3 cut(s) 134, 140, 303
HgaI GACGC 1 cut(s) 225
HinfI GANTC 2 cut(s) 229, 248
HpaII CCGG 3 cut(s) 134, 140, 303
HphI GGTGA 6 cut(s) 60, 108, 177, 210, 270, 302
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 164, 173, 200
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 368, 377
HpyF3I CTNAG 2 cut(s) 63, 327
HpySE526I ACGT 1 cut(s) 263
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 109, 390
Lsp1109I GCAGC 5 cut(s) 86, 89, 137, 335, 374
LweI GCATC 2 cut(s) 200, 221
MaeI CTAG 1 cut(s) 415
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 32
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 207, 388
MhlI GDGCHC 2 cut(s) 297, 309
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 2 cut(s) 223, 257
MnlI CCTC 9 cut(s) 61, 124, 193, 232, 262, 277, 322, 355, 358
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 4 cut(s) 311, 326, 339, 365
MspI CCGG 3 cut(s) 134, 140, 303
MspR9I CCNGG 2 cut(s) 140, 304
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 368, 377
NciI CCSGG 2 cut(s) 140, 304
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 6 cut(s) 138, 144, 307, 333, 343, 376
NmuCI GTSAC 1 cut(s) 66
PaqCI CACCTGC 2 cut(s) 169, 278
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PkrI GCNGC 7 cut(s) 76, 79, 103, 127, 157, 325, 364
PleI GAGTC 2 cut(s) 223, 256
PpsI GAGTC 2 cut(s) 223, 256
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 6 cut(s) 138, 144, 307, 333, 343, 376
PspOMI GGGCCC 1 cut(s) 305
PspPI GGNCC 3 cut(s) 136, 305, 306
PstNI CAGNNNCTG 1 cut(s) 326
PvuII CAGCTG 2 cut(s) 326, 365
SatI GCNGC 7 cut(s) 75, 78, 102, 126, 156, 324, 363
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 136, 305, 306
SchI GAGTC 2 cut(s) 223, 257
ScrFI CCNGG 2 cut(s) 140, 304
SduI GDGCHC 2 cut(s) 297, 309
SfaNI GCATC 2 cut(s) 200, 221
SfcI CTRYAG 1 cut(s) 150
Sse9I AATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 415
StyD4I CCNGG 2 cut(s) 138, 302
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 266
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 104, 158
TscAI CASTG 2 cut(s) 175, 202
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 5 cut(s) 74, 77, 125, 323, 362
Tsp45I GTSAC 1 cut(s) 66
TspRI CASTG 2 cut(s) 175, 202
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.