RLG00000017945

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017225
Physical Location & Seq
Forward (+)
23415475 .. 23415903
429 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017945

Sequence Viewer

Length: 429 bp
ATGGGTTTCGCCAGAATTCAAGTGTTCGTGATCTTGGGTCTGTTGGCCACCTCGTGTTTGGCTCAGTCACCCGCAGCAGCACCCAAACTCGCACCAACCGCCGCTCCCACCACCTCACCACCAGCAGCCACACCGGCCCCGGCACCCACTAAAGCCGCACCTGCACCCAGTGCAACTACGCCCTCACCAGCACCCACTGCAACTCCACCAGCATCTTCACCCTCCACGACTCCCGCGTCCACACCAGAGTCCTCCACCCCAACGTCCTCGCCACCTTCACCCACCGCAGGTGAGCCCACTTCCGGGCCCGCTGGAGAGCCAGGAGCTGAGGTTCCCAGCAGTGTTCCCAGCGGTGCCTCCGCTCCACGGTGGGCAGCTGTTGCTGGAACCGCTTTGGTGGGGAGCTTCTTCGCCGTCGTGTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

13.35

Weight (kDa)

6.05

Isoelectric Point (pI)

84.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017225)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20060
malus_domestica MD01G1032700.v1.1
prunus_persica Prupe.6G195800_v2.0.a1
pyrus_communis pycom15g27930
rosa_chinensis RchiOBHm_Chr2g0112051
rosa_laevigata RLG00000017945
rosa_multiflora Rmu_sc0002041.1_g000002
rosa_roxburghii Rroxscaffold_2G00131830
rosa_samantha Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana Rw2G017830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 169, 278
AasI GACNNNNNNGTC 1 cut(s) 235
Acc36I ACCTGC 2 cut(s) 169, 278
AccB1I GGYRCC 2 cut(s) 142, 353
AccBSI CCGCTC 2 cut(s) 104, 362
AccII CGCG 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 15
AdeI CACNNNGTG 2 cut(s) 54, 170
AfiI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 366
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 319
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 326, 377, 405
AluI AGCT 3 cut(s) 326, 377, 405
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 45, 135, 305, 423
ApaI GGGCCC 1 cut(s) 309
ApeKI GCWGC 4 cut(s) 74, 77, 125, 374
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 136, 305, 306
AsuC2I CCSGG 2 cut(s) 140, 304
AsuHPI GGTGA 6 cut(s) 60, 108, 177, 210, 270, 302
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 2 cut(s) 142, 353
BanII GRGCYC 2 cut(s) 297, 309
BauI CACGAG 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 4 cut(s) 86, 89, 137, 386
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 2 cut(s) 140, 304
BfaI CTAG 1 cut(s) 427
BfuAI ACCTGC 2 cut(s) 169, 278
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 6 cut(s) 75, 78, 102, 126, 156, 375
BlsI GCNGC 6 cut(s) 76, 79, 103, 127, 157, 376
Bme1390I CCNGG 3 cut(s) 140, 304, 321
BmgT120I GGNCC 3 cut(s) 136, 305, 306
BmiI GGNNCC 6 cut(s) 138, 144, 307, 333, 355, 388
BmrFI CCNGG 3 cut(s) 140, 304, 321
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 327
BpuMI CCSGG 2 cut(s) 140, 304
BsaJI CCNNGG 2 cut(s) 138, 365
BsaXI ACNNNNNCTCC 6 cut(s) 88, 118, 187, 217, 315, 345
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 302, 303, 366
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 138, 365
BseLI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 366
BseMII CTCAG 2 cut(s) 77, 318
BseNI ACTGG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 4 cut(s) 86, 89, 137, 386
BseYI CCCAGC 2 cut(s) 335, 347
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 4 cut(s) 47, 137, 307, 425
BshNI GGYRCC 2 cut(s) 142, 353
BsiSI CCGG 3 cut(s) 134, 140, 303
BslI CCNNNNNNNGG 4 cut(s) 287, 302, 303, 366
BsnI GGCC 4 cut(s) 47, 137, 307, 425
Bsp120I GGGCCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 297, 309
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 4 cut(s) 47, 137, 307, 425
BspCNI CTCAG 2 cut(s) 76, 319
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 6 cut(s) 138, 144, 307, 333, 355, 388
BspMI ACCTGC 2 cut(s) 169, 278
BspT107I GGYRCC 2 cut(s) 142, 353
BsrBI CCGCTC 2 cut(s) 104, 362
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 138, 365
BssMI GATC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 369
BstAPI GCANNNNNTGC 3 cut(s) 170, 197, 380
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 63, 327
BstDSI CCRYGG 1 cut(s) 365
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 380, 389
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 3 cut(s) 138, 302, 319
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 86, 89, 137, 386
BsuRI GGCC 4 cut(s) 47, 137, 307, 425
BtgI CCRYGG 1 cut(s) 365
BtsI GCAGTG 2 cut(s) 195, 346
BtsIMutI CAGTG 3 cut(s) 175, 195, 346
BveI ACCTGC 2 cut(s) 169, 278
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 136, 305, 306
CseI GACGC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 63, 327
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 2 cut(s) 54, 170
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 297, 309
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 297, 309
FauI CCCGC 3 cut(s) 79, 241, 316
Fnu4HI GCNGC 6 cut(s) 75, 78, 102, 126, 156, 375
FriOI GRGCYC 2 cut(s) 297, 309
Fsp4HI GCNGC 6 cut(s) 75, 78, 102, 126, 156, 375
FspBI CTAG 1 cut(s) 427
GluI GCNGC 6 cut(s) 75, 78, 102, 126, 156, 375
GsaI CCCAGC 2 cut(s) 339, 351
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 4 cut(s) 47, 137, 307, 425
HapII CCGG 3 cut(s) 134, 140, 303
HgaI GACGC 1 cut(s) 225
HinfI GANTC 2 cut(s) 229, 248
HpaII CCGG 3 cut(s) 134, 140, 303
HphI GGTGA 6 cut(s) 60, 108, 177, 210, 270, 302
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 164, 173, 200
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 380, 389
HpyF3I CTNAG 2 cut(s) 63, 327
HpySE526I ACGT 1 cut(s) 263
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 4 cut(s) 109, 323, 367, 402
Lsp1109I GCAGC 4 cut(s) 86, 89, 137, 386
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 427
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 32
MbiI CCGCTC 2 cut(s) 104, 362
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 207, 400
MhlI GDGCHC 2 cut(s) 297, 309
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 2 cut(s) 223, 257
MnlI CCTC 8 cut(s) 61, 124, 193, 232, 262, 277, 322, 367
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 3 cut(s) 311, 351, 377
MspI CCGG 3 cut(s) 134, 140, 303
MspR9I CCNGG 3 cut(s) 140, 304, 321
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 7 cut(s) 98, 134, 161, 170, 197, 380, 389
NciI CCSGG 2 cut(s) 140, 304
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 6 cut(s) 138, 144, 307, 333, 355, 388
NmuCI GTSAC 1 cut(s) 66
PaqCI CACCTGC 2 cut(s) 169, 278
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PkrI GCNGC 6 cut(s) 76, 79, 103, 127, 157, 376
PleI GAGTC 2 cut(s) 223, 256
PpsI GAGTC 2 cut(s) 223, 256
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 335, 347
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 6 cut(s) 138, 144, 307, 333, 355, 388
PspOMI GGGCCC 1 cut(s) 305
PspPI GGNCC 3 cut(s) 136, 305, 306
PstNI CAGNNNCTG 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 377
SatI GCNGC 6 cut(s) 75, 78, 102, 126, 156, 375
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 136, 305, 306
SchI GAGTC 2 cut(s) 223, 257
ScrFI CCNGG 3 cut(s) 140, 304, 321
SduI GDGCHC 2 cut(s) 297, 309
SfaNI GCATC 1 cut(s) 221
Sse9I AATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 138, 302, 319
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 266
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 104, 158
TscAI CASTG 3 cut(s) 175, 202, 346
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 4 cut(s) 74, 77, 125, 374
Tsp45I GTSAC 1 cut(s) 66
TspRI CASTG 3 cut(s) 175, 202, 346
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.