Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002041.1

Orthogroup ID

OG0017225

Physical Location & Seq

Genomic Coordinates Forward (+)

4671 .. 5108

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002041.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgggtttcgccagaattcaagtgttcgtgatcttgggtctgttggccacctcgtgtttggctcagtcacccgcagcagcacccaaactcgcacctaccgccgctcccaccacctcaccacccgcagccacaccggccccggcacccactacagccgcacctgcacccactacagccgcacctgcacccagtgcaactacgccctcaccagcatccactgcaactccaccagcatcttcaccctccacgactcccgcgtccacaccagagtcctccaccccaacgtcctcgccaccttcacccaccgcaggtgagcccacttccgggccagctggagagccagcagctgaggttcccagcggtgcctctgctccacggtgggcagctgttgctggaaccgctttggtggggagcttcttcgccgtcgtgttggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

13.56

Weight (kDa)

4.94

Isoelectric Point (pI)

83.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20060
malus_domestica	MD01G1032700.v1.1
prunus_persica	Prupe.6G195800_v2.0.a1
pyrus_communis	pycom15g27930
rosa_chinensis	RchiOBHm_Chr2g0112051
rosa_laevigata	RLG00000017945
rosa_multiflora	Rmu_sc0002041.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131830
rosa_samantha	Rh2AG230200 Rh2BG243200 Rh2CG234500 Rh2DG238100
rosa_wichuraiana	Rw2G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	169, 190, 299
AasI	GACNNNNNNGTC	1 cut(s)	256
Acc36I	ACCTGC	3 cut(s)	169, 190, 299
AccB1I	GGYRCC	2 cut(s)	142, 362
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	15
AdeI	CACNNNGTG	2 cut(s)	54, 191
AfiI	CCNNNNNNNGG	3 cut(s)	308, 323, 324
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	4 cut(s)	332, 347, 386, 414
AluI	AGCT	4 cut(s)	332, 347, 386, 414
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	45, 135, 326, 432
ApeKI	GCWGC	5 cut(s)	74, 77, 125, 344, 383
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	136, 326
AsuC2I	CCSGG	2 cut(s)	140, 325
AsuHPI	GGTGA	6 cut(s)	60, 108, 198, 231, 291, 323
BalI	TGGCCA	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	142, 362
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	5 cut(s)	86, 89, 137, 356, 395
BceAI	ACGGC	1 cut(s)	407
BcnI	CCSGG	2 cut(s)	140, 325
BfaI	CTAG	1 cut(s)	436
BfmI	CTRYAG	2 cut(s)	150, 171
BfuAI	ACCTGC	3 cut(s)	169, 190, 299
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	8 cut(s)	75, 78, 102, 126, 156, 177, 345, 384
BlsI	GCNGC	8 cut(s)	76, 79, 103, 127, 157, 178, 346, 385
Bme1390I	CCNGG	2 cut(s)	140, 325
BmgT120I	GGNCC	2 cut(s)	136, 326
BmiI	GGNNCC	5 cut(s)	138, 144, 354, 364, 397
BmrFI	CCNGG	2 cut(s)	140, 325
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	221, 242
BmuI	ACTGGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	140, 325
BsaJI	CCNNGG	2 cut(s)	138, 374
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 208, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 323, 324
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	138, 374
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	308, 323, 324
BseMII	CTCAG	2 cut(s)	77, 339
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	5 cut(s)	86, 89, 137, 356, 395
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	2 cut(s)	147, 168
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	4 cut(s)	47, 137, 328, 434
BshNI	GGYRCC	2 cut(s)	142, 362
BsiSI	CCGG	3 cut(s)	134, 140, 324
BslI	CCNNNNNNNGG	3 cut(s)	308, 323, 324
BsnI	GGCC	4 cut(s)	47, 137, 328, 434
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	30
BspANI	GGCC	4 cut(s)	47, 137, 328, 434
BspCNI	CTCAG	2 cut(s)	76, 340
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	5 cut(s)	138, 144, 354, 364, 397
BspMI	ACCTGC	3 cut(s)	169, 190, 299
BspT107I	GGYRCC	2 cut(s)	142, 362
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	138, 374
BssMI	GATC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	378
BstAPI	GCANNNNNTGC	3 cut(s)	191, 218, 389
BstC8I	GCNNGC	2 cut(s)	330, 342
BstDEI	CTNAG	2 cut(s)	63, 348
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 134, 161, 182, 191, 218, 389, 398
BstSCI	CCNGG	2 cut(s)	138, 323
BstSFI	CTRYAG	2 cut(s)	150, 171
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	5 cut(s)	86, 89, 137, 356, 395
BsuRI	GGCC	4 cut(s)	47, 137, 328, 434
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	196, 216
BveI	ACCTGC	3 cut(s)	169, 190, 299
Cac8I	GCNNGC	2 cut(s)	330, 342
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	136, 326
CseI	GACGC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	63, 348
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraIII	CACNNNGTG	2 cut(s)	54, 191
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	318
FauI	CCCGC	3 cut(s)	79, 130, 262
Fnu4HI	GCNGC	8 cut(s)	75, 78, 102, 126, 156, 177, 345, 384
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	8 cut(s)	75, 78, 102, 126, 156, 177, 345, 384
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	8 cut(s)	75, 78, 102, 126, 156, 177, 345, 384
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	47, 137, 328, 434
HapII	CCGG	3 cut(s)	134, 140, 324
HgaI	GACGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	250, 269
HpaII	CCGG	3 cut(s)	134, 140, 324
HphI	GGTGA	6 cut(s)	60, 108, 198, 231, 291, 323
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	164, 185, 194, 221
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 134, 161, 182, 191, 218, 389, 398
HpyF3I	CTNAG	2 cut(s)	63, 348
HpySE526I	ACGT	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	109, 376, 411
Lsp1109I	GCAGC	5 cut(s)	86, 89, 137, 356, 395
LweI	GCATC	2 cut(s)	221, 242
MaeI	CTAG	1 cut(s)	436
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	228, 409
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	2 cut(s)	244, 278
MnlI	CCTC	8 cut(s)	61, 124, 214, 253, 283, 298, 343, 376
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	4 cut(s)	332, 347, 360, 386
MspI	CCGG	3 cut(s)	134, 140, 324
MspR9I	CCNGG	2 cut(s)	140, 325
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	8 cut(s)	98, 134, 161, 182, 191, 218, 389, 398
NciI	CCSGG	2 cut(s)	140, 325
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	5 cut(s)	138, 144, 354, 364, 397
NmuCI	GTSAC	1 cut(s)	66
PaqCI	CACCTGC	3 cut(s)	169, 190, 299
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PkrI	GCNGC	8 cut(s)	76, 79, 103, 127, 157, 178, 346, 385
PleI	GAGTC	2 cut(s)	244, 277
PpsI	GAGTC	2 cut(s)	244, 277
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	5 cut(s)	138, 144, 354, 364, 397
PspPI	GGNCC	2 cut(s)	136, 326
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	3 cut(s)	332, 347, 386
SatI	GCNGC	8 cut(s)	75, 78, 102, 126, 156, 177, 345, 384
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	136, 326
SchI	GAGTC	2 cut(s)	244, 278
ScrFI	CCNGG	2 cut(s)	140, 325
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	221, 242
SfcI	CTRYAG	2 cut(s)	150, 171
Sse9I	AATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	138, 323
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	287
TasI	AATT	1 cut(s)	15
TauI	GCSGC	3 cut(s)	104, 158, 179
TscAI	CASTG	2 cut(s)	196, 223
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	5 cut(s)	74, 77, 125, 344, 383
Tsp45I	GTSAC	1 cut(s)	66
TspRI	CASTG	2 cut(s)	196, 223
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.