Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015524

Physical Location & Seq

Genomic Coordinates Reverse (-)

12952582 .. 12956408

Gene Structure 3827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20800.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGTCAACACTTCTATGGAACAACGGATATTGCTGTATTGTGTAAAGATGGAATTATACTCGCCAATGATGCTAGGATTACATTACAGATCAAGGATGAGCTCGGCAAAGAAGATAGCGAACTGGCAACAGATGAGGGAGTCAAAATGTTTCAATTATGTTCCAAGCCTAAAATATATTGTACTTTAATGGGAGATGTCAAACAATGGCATGAAATGTACGAAGATTTGCTTCGGCGGGGACCGAAATCAGTGGAAGATGCGAAGAATTATGCAGAAGATTACTTAAAAGGCTTCCGAAGGAAAGATCGCAAAAATCGGAGGACAGAGTGCGGCGCATTTGGCATAATTGTTGCCGGATATCAGGAACAAAAGGGCTTTCAAATTTTTGGTGTAACCTATAGTGGTAAAAAAGTAGAGATTCACAATGGGCCAATGATTGCAATAGGATCTGGTTGTTTTTATGCTATAAAATGTCTCAATATAAGGAAGGGTAATCCTAACATGTCTGAAGAATTTGGTACCACTATCACTCTGCAAGCTCTAATGGAAAGCAGTTTCCAAGACCGTGACACCGGTGGATATTTGAAAGTGATATTCGTGCATAAGGATGGTTGCATTTCTAATACGTATCAGGTTTTAGATGTTTATAATGCACTTTATAACCCAAGTGATCAGGATGAAAAATCAACTATGTTCATGATGTATTCTACAAGCATCGGCCCTATATTTAGTGATGATGAGATCCTCGCTCTCATAAGGGACCTCTGGTCAACAAGTGTAGTGAACACCGAAGAGTACAAGATGTGTAACATCATAGCAAAGAAGGCTAATTATTATATAACTCGTATTGTGTTGGACAAAGAAAAGGATGCTGAAAGAGTGTACGAGTACCTAAGCACCAAAAATGCTAGACCATTTTTTCCTAAAACCTTAAGTCATATTAGAAGCGAATTGGTTGATTGTATTAGGGAAAAAACTCGTGATCACATTTATGTTGGAAGGAGCTCGAAGAGATTATTAGAGGGTATATGTAAGTTGCAAAATGCAGACTCTTTCAAGTATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0022607 GO:0030163 GO:0031597 GO:0031984 GO:0032991 GO:0034515 GO:0034622 GO:0042175 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0065003 GO:0070011 GO:0071704 GO:0071840 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

357

Amino Acids

40.78

Weight (kDa)

7.49

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	6 - 198	1.1e-11	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821
rosa_laevigata	RLG00000018060
rosa_roxburghii	Rroxscaffold_2G00129900
rosa_rugosa	Rorug02G0187200
rosa_samantha	Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600
rosa_wichuraiana	Rw2G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	651, 663
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AciI	CCGC	2 cut(s)	238, 333
AclWI	GGATC	2 cut(s)	457, 739
AcsI	RAATTY	2 cut(s)	384, 515
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	6 cut(s)	184, 221, 523, 800, 887, 893
AflII	CTTAAG	1 cut(s)	934
AflIII	ACRYGT	1 cut(s)	504
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	4 cut(s)	155, 383, 589, 1060
AhdI	GACNNNNNGTC	1 cut(s)	769
AluBI	AGCT	3 cut(s)	103, 542, 1008
AluI	AGCT	3 cut(s)	103, 542, 1008
Alw21I	GWGCWC	2 cut(s)	105, 1010
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	457, 739
AoxI	GGCC	2 cut(s)	431, 721
ApoI	RAATTY	2 cut(s)	384, 515
AsiGI	ACCGGT	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	4 cut(s)	242, 431, 722, 763
AvaII	GGWCC	2 cut(s)	242, 763
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	105, 1010
BauI	CACGAG	1 cut(s)	981
Bbv12I	GWGCWC	2 cut(s)	105, 1010
BccI	CCATC	2 cut(s)	44, 605
BclI	TGATCA	2 cut(s)	673, 985
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	75, 912
BfmI	CTRYAG	1 cut(s)	400
BfrI	CTTAAG	1 cut(s)	934
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	242, 763
BmeRI	GACNNNNNGTC	1 cut(s)	769
BmgT120I	GGNCC	4 cut(s)	242, 431, 722, 763
BmiI	GGNNCC	3 cut(s)	243, 523, 764
BmsI	GCATC	4 cut(s)	61, 250, 726, 862
Bpu10I	CCTNAGC	1 cut(s)	896
BsaAI	YACGTR	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	103, 616, 685, 877
BseNI	ACTGG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	433, 723
BshNI	GGYRCC	1 cut(s)	521
BshTI	ACCGGT	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	105, 1010
BsiSI	CCGG	2 cut(s)	357, 576
BslFI	GGGAC	2 cut(s)	255, 776
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	255, 776
BsnI	GGCC	2 cut(s)	433, 723
Bsp1286I	GDGCHC	2 cut(s)	105, 1010
Bsp143I	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
BspACI	CCGC	2 cut(s)	238, 333
BspANI	GGCC	2 cut(s)	433, 723
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	243, 523, 764
BspPI	GGATC	2 cut(s)	457, 739
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	1 cut(s)	934
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	575
BssMI	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
BssSI	CACGAG	1 cut(s)	981
Bst2BI	CACGAG	1 cut(s)	981
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	789, 1007
BstAFI	CTTAAG	1 cut(s)	934
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	896
BstF5I	GGATG	4 cut(s)	103, 616, 685, 877
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	6 cut(s)	93, 310, 452, 676, 747, 988
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 342, 827
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	400
BstSNI	TACGTA	1 cut(s)	630
BstX2I	RGATCY	2 cut(s)	449, 744
BstYI	RGATCY	2 cut(s)	449, 744
BsuRI	GGCC	2 cut(s)	433, 723
BtsCI	GGATG	4 cut(s)	103, 616, 685, 877
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	540
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	4 cut(s)	242, 431, 722, 763
Csp6I	GTAC	6 cut(s)	183, 220, 522, 799, 886, 892
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	3 cut(s)	212, 505, 700
CviJI	RGCY	9 cut(s)	103, 169, 294, 378, 433, 542, 723, 830, 1008
CviKI_1	RGCY	9 cut(s)	103, 169, 294, 378, 433, 542, 723, 830, 1008
CviQI	GTAC	6 cut(s)	183, 220, 522, 799, 886, 892
DdeI	CTNAG	1 cut(s)	896
DpnI	GATC	6 cut(s)	92, 309, 451, 675, 746, 987
DpnII	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
DriI	GACNNNNNGTC	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	789, 1007
Eam1105I	GACNNNNNGTC	1 cut(s)	769
EarI	CTCTTC	2 cut(s)	789, 1007
Ecl136II	GAGCTC	2 cut(s)	103, 1008
Eco105I	TACGTA	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	105, 1010
Eco32I	GATATC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	242, 763
Eco53kI	GAGCTC	2 cut(s)	103, 1008
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	2 cut(s)	103, 1008
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	362
EcoT38I	GRGCYC	2 cut(s)	105, 1010
FaeI	CATG	3 cut(s)	215, 508, 703
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	255, 776
FatI	CATG	3 cut(s)	211, 504, 699
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	2 cut(s)	673, 985
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	4 cut(s)	110, 623, 692, 884
FriOI	GRGCYC	2 cut(s)	105, 1010
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	75, 912
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	433, 723
HapII	CCGG	2 cut(s)	357, 576
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	215, 508, 703
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	2 cut(s)	8, 774
HindII	GTYRAC	2 cut(s)	8, 774
HinfI	GANTC	3 cut(s)	141, 421, 1052
HpaII	CCGG	2 cut(s)	357, 576
Hpy166II	GTNNAC	4 cut(s)	8, 774, 787, 886
Hpy188I	TCNGA	3 cut(s)	299, 321, 511
Hpy188III	TCNNGA	4 cut(s)	365, 677, 700, 983
Hpy8I	GTNNAC	4 cut(s)	8, 774, 787, 886
HpyAV	CCTTC	4 cut(s)	294, 484, 820, 996
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	8 cut(s)	275, 443, 538, 604, 618, 656, 1042, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 342, 827
HpyF3I	CTNAG	1 cut(s)	896
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	215, 508, 703
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	2 cut(s)	673, 985
Kzo9I	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
LmnI	GCTCC	1 cut(s)	1005
LpnPI	CCDG	8 cut(s)	110, 350, 370, 438, 589, 620, 662, 754
LweI	GCATC	4 cut(s)	61, 250, 726, 862
MaeI	CTAG	2 cut(s)	75, 912
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	394, 569, 809
MalI	GATC	6 cut(s)	92, 309, 451, 675, 746, 987
MboI	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
MboII	GAAGA	8 cut(s)	125, 236, 269, 277, 290, 524, 806, 1024
MflI	RGATCY	2 cut(s)	449, 744
MhlI	GDGCHC	2 cut(s)	105, 1010
MluCI	AATT	8 cut(s)	54, 155, 268, 348, 384, 515, 832, 953
MlyI	GAGTC	2 cut(s)	150, 1046
MmeI	TCCRAC	2 cut(s)	837, 979
MnlI	CCTC	5 cut(s)	130, 315, 758, 776, 1018
MseI	TTAA	3 cut(s)	188, 287, 935
MslI	CAYNNNNRTG	3 cut(s)	15, 609, 993
MspCI	CTTAAG	1 cut(s)	934
MspI	CCGG	2 cut(s)	357, 576
MwoI	GCNNNNNNNGC	3 cut(s)	71, 342, 827
NdeII	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
NlaIII	CATG	3 cut(s)	215, 508, 703
NlaIV	GGNNCC	3 cut(s)	243, 523, 764
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	699
PciI	ACATGT	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	149, 1046
PpsI	GAGTC	2 cut(s)	149, 1046
Ppu21I	YACGTR	1 cut(s)	630
PpuMI	RGGWCCY	1 cut(s)	763
PscI	ACATGT	1 cut(s)	504
PsiI	TTATAA	2 cut(s)	651, 663
Psp124BI	GAGCTC	2 cut(s)	105, 1010
Psp5II	RGGWCCY	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	243, 523, 764
PspPI	GGNCC	4 cut(s)	242, 431, 722, 763
PspPPI	RGGWCCY	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	449, 744
RsaI	GTAC	6 cut(s)	184, 221, 523, 800, 887, 893
RsaNI	GTAC	6 cut(s)	183, 220, 522, 799, 886, 892
RseI	CAYNNNNRTG	3 cut(s)	15, 609, 993
SacI	GAGCTC	2 cut(s)	105, 1010
SaqAI	TTAA	3 cut(s)	188, 287, 935
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	6 cut(s)	90, 307, 449, 673, 744, 985
Sau96I	GGNCC	4 cut(s)	242, 431, 722, 763
SchI	GAGTC	2 cut(s)	150, 1046
SduI	GDGCHC	2 cut(s)	105, 1010
SetI	ASST	9 cut(s)	105, 401, 544, 632, 639, 768, 897, 935, 1010
SfaNI	GCATC	4 cut(s)	61, 250, 726, 862
SfcI	CTRYAG	1 cut(s)	400
SgrAI	CRCCGGYG	1 cut(s)	575
SinI	GGWCC	2 cut(s)	242, 763
SmiMI	CAYNNNNRTG	3 cut(s)	15, 609, 993
SmlI	CTYRAG	1 cut(s)	934
SmoI	CTYRAG	1 cut(s)	934
SnaBI	TACGTA	1 cut(s)	630
Sse9I	AATT	8 cut(s)	54, 155, 268, 348, 384, 515, 832, 953
SsiI	CCGC	2 cut(s)	238, 333
SspMI	CTAG	2 cut(s)	75, 912
SstI	GAGCTC	2 cut(s)	105, 1010
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	1010
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	8 cut(s)	54, 155, 268, 348, 384, 515, 832, 953
TatI	WGTACW	2 cut(s)	182, 798
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	3 cut(s)	188, 287, 935
Tru9I	TTAA	3 cut(s)	188, 287, 935
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	3 cut(s)	228, 688, 696
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	934
VpaK11BI	GGWCC	2 cut(s)	242, 763
XapI	RAATTY	2 cut(s)	384, 515
XceI	RCATGY	1 cut(s)	508
XspI	CTAG	2 cut(s)	75, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.