The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821 |
| rosa_laevigata | RLG00000018060 |
| rosa_roxburghii | Rroxscaffold_2G00129900 |
| rosa_rugosa | Rorug02G0187200 |
| rosa_samantha | Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600 |
| rosa_wichuraiana | Rw2G018870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 116 |
| Acc16I | TGCGCA | 1 cut(s) | 484 |
| AccB1I | GGYRCC | 2 cut(s) | 285, 327 |
| AccII | CGCG | 1 cut(s) | 618 |
| AclWI | GGATC | 1 cut(s) | 655 |
| AcsI | RAATTY | 3 cut(s) | 368, 582, 786 |
| AfaI | GTAC | 1 cut(s) | 615 |
| AgsI | TTSAA | 9 cut(s) | 163, 233, 353, 409, 581, 642, 743, 766, 1066 |
| AluBI | AGCT | 5 cut(s) | 83, 746, 962, 975, 1032 |
| AluI | AGCT | 5 cut(s) | 83, 746, 962, 975, 1032 |
| Alw21I | GWGCWC | 2 cut(s) | 882, 1034 |
| Alw26I | GTCTC | 2 cut(s) | 69, 282 |
| AlwI | GGATC | 1 cut(s) | 655 |
| AoxI | GGCC | 2 cut(s) | 735, 938 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| ApoI | RAATTY | 3 cut(s) | 368, 582, 786 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 1 cut(s) | 485 |
| AspS9I | GGNCC | 2 cut(s) | 118, 939 |
| AsuC2I | CCSGG | 2 cut(s) | 335, 365 |
| AsuHPI | GGTGA | 1 cut(s) | 31 |
| AsuII | TTCGAA | 2 cut(s) | 425, 970 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| AxyI | CCTNAGG | 1 cut(s) | 951 |
| BanI | GGYRCC | 2 cut(s) | 285, 327 |
| BanII | GRGCYC | 1 cut(s) | 1034 |
| BauI | CACGAG | 2 cut(s) | 279, 320 |
| Bbv12I | GWGCWC | 2 cut(s) | 882, 1034 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 1 cut(s) | 35 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BciVI | GTATCC | 1 cut(s) | 551 |
| BcnI | CCSGG | 2 cut(s) | 335, 365 |
| BcoDI | GTCTC | 2 cut(s) | 69, 282 |
| BfaI | CTAG | 5 cut(s) | 587, 599, 671, 936, 1005 |
| BfuI | GTATCC | 1 cut(s) | 551 |
| BisI | GCNGC | 1 cut(s) | 91 |
| BlsI | GCNGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 2 cut(s) | 335, 365 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 2 cut(s) | 118, 939 |
| BmiI | GGNNCC | 4 cut(s) | 287, 329, 339, 453 |
| BmrFI | CCNGG | 2 cut(s) | 335, 365 |
| BmsI | GCATC | 3 cut(s) | 195, 479, 1060 |
| Bpu14I | TTCGAA | 2 cut(s) | 425, 970 |
| BpuMI | CCSGG | 2 cut(s) | 335, 365 |
| Bsa29I | ATCGAT | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 1 cut(s) | 1035 |
| BsaWI | WCCGGW | 2 cut(s) | 251, 779 |
| Bse21I | CCTNAGG | 1 cut(s) | 951 |
| Bse3DI | GCAATG | 1 cut(s) | 242 |
| BseCI | ATCGAT | 1 cut(s) | 208 |
| BseDI | CCNNGG | 1 cut(s) | 1035 |
| BseGI | GGATG | 1 cut(s) | 1075 |
| BseMI | GCAATG | 1 cut(s) | 242 |
| BseMII | CTCAG | 3 cut(s) | 70, 782, 965 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| Bsh1236I | CGCG | 1 cut(s) | 618 |
| BshFI | GGCC | 2 cut(s) | 737, 940 |
| BshNI | GGYRCC | 2 cut(s) | 285, 327 |
| BshVI | ATCGAT | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 2 cut(s) | 882, 1034 |
| BsiSI | CCGG | 5 cut(s) | 252, 334, 365, 555, 780 |
| BslFI | GGGAC | 1 cut(s) | 428 |
| BsmAI | GTCTC | 2 cut(s) | 69, 282 |
| BsmFI | GGGAC | 1 cut(s) | 428 |
| BsmI | GAATGC | 1 cut(s) | 308 |
| BsnI | GGCC | 2 cut(s) | 737, 940 |
| Bsp119I | TTCGAA | 2 cut(s) | 425, 970 |
| Bsp1286I | GDGCHC | 2 cut(s) | 882, 1034 |
| Bsp143I | GATC | 3 cut(s) | 205, 628, 647 |
| BspANI | GGCC | 2 cut(s) | 737, 940 |
| BspCNI | CTCAG | 3 cut(s) | 69, 783, 964 |
| BspDI | ATCGAT | 1 cut(s) | 208 |
| BspFNI | CGCG | 1 cut(s) | 618 |
| BspHI | TCATGA | 1 cut(s) | 67 |
| BspLI | GGNNCC | 4 cut(s) | 287, 329, 339, 453 |
| BspPI | GGATC | 1 cut(s) | 655 |
| BspT104I | TTCGAA | 2 cut(s) | 425, 970 |
| BspT107I | GGYRCC | 2 cut(s) | 285, 327 |
| BsrDI | GCAATG | 1 cut(s) | 242 |
| BssECI | CCNNGG | 1 cut(s) | 1035 |
| BssMI | GATC | 3 cut(s) | 205, 628, 647 |
| BssSI | CACGAG | 2 cut(s) | 279, 320 |
| BssT1I | CCWWGG | 1 cut(s) | 1035 |
| Bst2BI | CACGAG | 2 cut(s) | 279, 320 |
| Bst4CI | ACNGT | 2 cut(s) | 176, 698 |
| Bst6I | CTCTTC | 1 cut(s) | 564 |
| BstBI | TTCGAA | 2 cut(s) | 425, 970 |
| BstC8I | GCNNGC | 2 cut(s) | 184, 856 |
| BstDEI | CTNAG | 3 cut(s) | 56, 791, 951 |
| BstF5I | GGATG | 1 cut(s) | 1075 |
| BstFNI | CGCG | 1 cut(s) | 618 |
| BstHHI | GCGC | 1 cut(s) | 485 |
| BstKTI | GATC | 3 cut(s) | 208, 631, 650 |
| BstMAI | GTCTC | 2 cut(s) | 69, 282 |
| BstMBI | GATC | 3 cut(s) | 205, 628, 647 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 743, 851, 905 |
| BstNSI | RCATGY | 2 cut(s) | 1016, 1063 |
| BstSCI | CCNGG | 2 cut(s) | 333, 363 |
| BstUI | CGCG | 1 cut(s) | 618 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstX2I | RGATCY | 1 cut(s) | 647 |
| BstYI | RGATCY | 1 cut(s) | 647 |
| Bsu15I | ATCGAT | 1 cut(s) | 208 |
| Bsu36I | CCTNAGG | 1 cut(s) | 951 |
| BsuI | GTATCC | 1 cut(s) | 551 |
| BsuRI | GGCC | 2 cut(s) | 737, 940 |
| BsuTUI | ATCGAT | 1 cut(s) | 208 |
| BtsCI | GGATG | 1 cut(s) | 1075 |
| BtsIMutI | CAGTG | 2 cut(s) | 468, 624 |
| Cac8I | GCNNGC | 2 cut(s) | 184, 856 |
| CciI | TCATGA | 1 cut(s) | 67 |
| CfoI | GCGC | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 2 cut(s) | 118, 939 |
| ClaI | ATCGAT | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 614 |
| CviAII | CATG | 7 cut(s) | 38, 68, 115, 168, 709, 1013, 1060 |
| CviQI | GTAC | 1 cut(s) | 614 |
| DdeI | CTNAG | 3 cut(s) | 56, 791, 951 |
| DpnI | GATC | 3 cut(s) | 207, 630, 649 |
| DpnII | GATC | 3 cut(s) | 205, 628, 647 |
| DraI | TTTAAA | 2 cut(s) | 498, 1083 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 116 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 116 |
| Eam1104I | CTCTTC | 1 cut(s) | 564 |
| EarI | CTCTTC | 1 cut(s) | 564 |
| Ecl136II | GAGCTC | 1 cut(s) | 1032 |
| Eco130I | CCWWGG | 1 cut(s) | 1035 |
| Eco24I | GRGCYC | 1 cut(s) | 1034 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco53kI | GAGCTC | 1 cut(s) | 1032 |
| Eco81I | CCTNAGG | 1 cut(s) | 951 |
| EcoICRI | GAGCTC | 1 cut(s) | 1032 |
| EcoRI | GAATTC | 1 cut(s) | 786 |
| EcoT14I | CCWWGG | 1 cut(s) | 1035 |
| EcoT22I | ATGCAT | 1 cut(s) | 1061 |
| EcoT38I | GRGCYC | 1 cut(s) | 1034 |
| ErhI | CCWWGG | 1 cut(s) | 1035 |
| FaeI | CATG | 7 cut(s) | 41, 71, 118, 171, 712, 1016, 1063 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 842, 874 |
| FaqI | GGGAC | 1 cut(s) | 428 |
| FatI | CATG | 7 cut(s) | 37, 67, 114, 167, 708, 1012, 1059 |
| FauNDI | CATATG | 1 cut(s) | 1055 |
| Fnu4HI | GCNGC | 1 cut(s) | 91 |
| FokI | GGATG | 1 cut(s) | 1082 |
| FriOI | GRGCYC | 1 cut(s) | 1034 |
| Fsp4HI | GCNGC | 1 cut(s) | 91 |
| FspBI | CTAG | 5 cut(s) | 587, 599, 671, 936, 1005 |
| FspI | TGCGCA | 1 cut(s) | 484 |
| GlaI | GCGC | 1 cut(s) | 484 |
| GluI | GCNGC | 1 cut(s) | 91 |
| HaeIII | GGCC | 2 cut(s) | 737, 940 |
| HapII | CCGG | 5 cut(s) | 252, 334, 365, 555, 780 |
| HhaI | GCGC | 1 cut(s) | 485 |
| Hin1II | CATG | 7 cut(s) | 41, 71, 118, 171, 712, 1016, 1063 |
| Hin6I | GCGC | 1 cut(s) | 483 |
| HinP1I | GCGC | 1 cut(s) | 483 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 2 cut(s) | 378, 517 |
| HpaII | CCGG | 5 cut(s) | 252, 334, 365, 555, 780 |
| HphI | GGTGA | 1 cut(s) | 31 |
| Hpy166II | GTNNAC | 1 cut(s) | 1018 |
| Hpy188I | TCNGA | 1 cut(s) | 792 |
| Hpy188III | TCNNGA | 7 cut(s) | 68, 121, 203, 269, 299, 632, 807 |
| Hpy8I | GTNNAC | 1 cut(s) | 1018 |
| HpyAV | CCTTC | 7 cut(s) | 10, 96, 226, 516, 1020, 1043, 1060 |
| HpyCH4III | ACNGT | 2 cut(s) | 176, 698 |
| HpyCH4V | TGCA | 6 cut(s) | 171, 182, 247, 754, 1059, 1073 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 743, 851, 905 |
| HpyF3I | CTNAG | 3 cut(s) | 56, 791, 951 |
| Hsp92II | CATG | 7 cut(s) | 41, 71, 118, 171, 712, 1016, 1063 |
| HspAI | GCGC | 1 cut(s) | 483 |
| Kzo9I | GATC | 3 cut(s) | 205, 628, 647 |
| LmnI | GCTCC | 3 cut(s) | 782, 1029, 1037 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| LweI | GCATC | 3 cut(s) | 195, 479, 1060 |
| MaeI | CTAG | 5 cut(s) | 587, 599, 671, 936, 1005 |
| MaeIII | GTNAC | 2 cut(s) | 19, 359 |
| MalI | GATC | 3 cut(s) | 207, 630, 649 |
| MboI | GATC | 3 cut(s) | 205, 628, 647 |
| MboII | GAAGA | 3 cut(s) | 211, 581, 668 |
| MfeI | CAATTG | 1 cut(s) | 24 |
| MflI | RGATCY | 1 cut(s) | 647 |
| MhlI | GDGCHC | 2 cut(s) | 882, 1034 |
| MluCI | AATT | 9 cut(s) | 9, 24, 191, 348, 368, 546, 582, 786, 981 |
| MlyI | GAGTC | 1 cut(s) | 372 |
| MnlI | CCTC | 9 cut(s) | 65, 248, 316, 341, 565, 786, 803, 889, 960 |
| Mph1103I | ATGCAT | 1 cut(s) | 1061 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 7 cut(s) | 8, 12, 194, 497, 729, 980, 1082 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1058 |
| MspI | CCGG | 5 cut(s) | 252, 334, 365, 555, 780 |
| MspR9I | CCNGG | 2 cut(s) | 335, 365 |
| MunI | CAATTG | 1 cut(s) | 24 |
| Mva1269I | GAATGC | 1 cut(s) | 308 |
| MvnI | CGCG | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 743, 851, 905 |
| NciI | CCSGG | 2 cut(s) | 335, 365 |
| NdeI | CATATG | 1 cut(s) | 1055 |
| NdeII | GATC | 3 cut(s) | 205, 628, 647 |
| NlaIII | CATG | 7 cut(s) | 41, 71, 118, 171, 712, 1016, 1063 |
| NlaIV | GGNNCC | 4 cut(s) | 287, 329, 339, 453 |
| NmuCI | GTSAC | 2 cut(s) | 19, 359 |
| NsbI | TGCGCA | 1 cut(s) | 484 |
| NsiI | ATGCAT | 1 cut(s) | 1061 |
| NspI | RCATGY | 2 cut(s) | 1016, 1063 |
| NspV | TTCGAA | 2 cut(s) | 425, 970 |
| PacI | TTAATTAA | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 67 |
| PctI | GAATGC | 1 cut(s) | 308 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 517 |
| PkrI | GCNGC | 1 cut(s) | 92 |
| PleI | GAGTC | 1 cut(s) | 372 |
| PpsI | GAGTC | 1 cut(s) | 372 |
| Psp124BI | GAGCTC | 1 cut(s) | 1034 |
| PspN4I | GGNNCC | 4 cut(s) | 287, 329, 339, 453 |
| PspPI | GGNCC | 2 cut(s) | 118, 939 |
| PsuI | RGATCY | 1 cut(s) | 647 |
| RsaI | GTAC | 1 cut(s) | 615 |
| RsaNI | GTAC | 1 cut(s) | 614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1058 |
| SacI | GAGCTC | 1 cut(s) | 1034 |
| SaqAI | TTAA | 7 cut(s) | 8, 12, 194, 497, 729, 980, 1082 |
| SatI | GCNGC | 1 cut(s) | 91 |
| Sau3AI | GATC | 3 cut(s) | 205, 628, 647 |
| Sau96I | GGNCC | 2 cut(s) | 118, 939 |
| SchI | GAGTC | 1 cut(s) | 372 |
| ScrFI | CCNGG | 2 cut(s) | 335, 365 |
| SduI | GDGCHC | 2 cut(s) | 882, 1034 |
| SetI | ASST | 9 cut(s) | 21, 85, 218, 592, 672, 748, 964, 977, 1034 |
| SfaNI | GCATC | 3 cut(s) | 195, 479, 1060 |
| SfuI | TTCGAA | 2 cut(s) | 425, 970 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmiI | ATTTAAAT | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1058 |
| Sse9I | AATT | 9 cut(s) | 9, 24, 191, 348, 368, 546, 582, 786, 981 |
| SspI | AATATT | 2 cut(s) | 228, 404 |
| SspMI | CTAG | 5 cut(s) | 587, 599, 671, 936, 1005 |
| SstI | GAGCTC | 1 cut(s) | 1034 |
| StyD4I | CCNGG | 2 cut(s) | 333, 363 |
| StyI | CCWWGG | 1 cut(s) | 1035 |
| SwaI | ATTTAAAT | 1 cut(s) | 498 |
| TaaI | ACNGT | 2 cut(s) | 176, 698 |
| TaqI | TCGA | 6 cut(s) | 208, 376, 425, 520, 631, 970 |
| TasI | AATT | 9 cut(s) | 9, 24, 191, 348, 368, 546, 582, 786, 981 |
| TfiI | GAWTC | 1 cut(s) | 517 |
| Tru1I | TTAA | 7 cut(s) | 8, 12, 194, 497, 729, 980, 1082 |
| Tru9I | TTAA | 7 cut(s) | 8, 12, 194, 497, 729, 980, 1082 |
| TscAI | CASTG | 2 cut(s) | 468, 631 |
| TseFI | GTSAC | 2 cut(s) | 19, 359 |
| TseI | GCWGC | 1 cut(s) | 90 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 359 |
| TspDTI | ATGAA | 4 cut(s) | 84, 453, 857, 903 |
| TspRI | CASTG | 2 cut(s) | 468, 631 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 3 cut(s) | 368, 582, 786 |
| XceI | RCATGY | 2 cut(s) | 1016, 1063 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 5 cut(s) | 587, 599, 671, 936, 1005 |
| Zsp2I | ATGCAT | 1 cut(s) | 1061 |