Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015524

Physical Location & Seq

Genomic Coordinates Forward (+)

12981342 .. 12984015

Gene Structure 2674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAGAAACACTGAAATTCACGAACTACTGTCAGATCAGGAAGTCAAAATATTTCAGATATGTTCCAAGCCCCATATATTTTCCACTTTGATGGGGGATGTAAAAGAATGGCATAAGATGTACGCACATATGCTTGAGAATGGACCAAAATCAGTAAATGAATCATTTGAATGCGCATATGCGTATTTGACGAAGAATCAGAGAAATGAGGAAGACTTTGGTACAATTATTGCTGGATACAACAAAAATGAGGGCTTTCAAATGAAAAGTGTTAGGTTAGCCCGTAGTAAAGTAATTGAAGAAAAAGGTTCAGCAATTGTAATAGGATCTGGTGCCTTCCTTACTGAAGGTCTTTTACAAGAAATTGTCGGGAGGTATGATATCATGACAAAAAAAGATGCTGTTGTTATAGCCTTAAGAATTCTGATGATGGGAAGTTTTTGTGACTACTTCACTGGTTGCAAATTTAGAGTGACATTCTTGCACAAGGGTGGTTGCATTTCTGACACCTATCAACTTTTAAATGTCTACAATATATTGTATGACCCGAAGGAAGAACAATCAACTATGTTTTTGATTTATTCGACAAGCTTTGGACCAATTTTCGGAGGTGAAAATGTCAACGCTCTCATAAAAGACCTCTGGTCAAGAAGACGGAACGATATTGTGGAGTCTAATACCATAGCAAAAAAATCTCATTTTTATGTGAATCGTATTGCGTTCGCCGATGCAAATGCGGCTACAAAAGCATACAAGGAACTAATTAAGCACAAAAAATGCAAACCCTTTCTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

30.4

Weight (kDa)

8.86

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821
rosa_laevigata	RLG00000018060
rosa_roxburghii	Rroxscaffold_2G00129900
rosa_rugosa	Rorug02G0187200
rosa_samantha	Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600
rosa_wichuraiana	Rw2G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	1 cut(s)	740
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	18, 423, 467
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	125, 226
AfiI	CCNNNNNNNGG	1 cut(s)	608
AflII	CTTAAG	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	173, 263, 302
AhdI	GACNNNNNGTC	1 cut(s)	646
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	1 cut(s)	594
AluI	AGCT	1 cut(s)	594
AlwI	GGATC	1 cut(s)	337
ApoI	RAATTY	3 cut(s)	18, 423, 467
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	146, 599
AsuHPI	GGTGA	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	146, 599
BanI	GGYRCC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbsI	GAAGAC	2 cut(s)	222, 661
BccI	CCATC	2 cut(s)	88, 427
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciVI	GTATCC	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	741
BlsI	GCNGC	1 cut(s)	742
Bme18I	GGWCC	2 cut(s)	146, 599
BmeRI	GACNNNNNGTC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	146, 599
BmiI	GGNNCC	1 cut(s)	337
BmsI	GCATC	2 cut(s)	391, 721
BpiI	GAAGAC	2 cut(s)	222, 661
BpuEI	CTTGAG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseNI	ACTGG	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	37, 329
BspACI	CCGC	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	335
BspTI	CTTAAG	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	37, 329
Bst4CI	ACNGT	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	40, 332
BstMBI	GATC	2 cut(s)	37, 329
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 749
BstV2I	GAAGAC	2 cut(s)	222, 661
BstX2I	RGATCY	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	12, 456
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	146, 599
Csp6I	GTAC	2 cut(s)	124, 225
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	6 cut(s)	73, 258, 284, 416, 594, 743
CviKI_1	RGCY	6 cut(s)	73, 258, 284, 416, 594, 743
CviQI	GTAC	2 cut(s)	124, 225
DpnI	GATC	2 cut(s)	39, 331
DpnII	GATC	2 cut(s)	37, 329
DraI	TTTAAA	1 cut(s)	525
DriI	GACNNNNNGTC	1 cut(s)	646
Eam1105I	GACNNNNNGTC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	146, 599
Eco57I	CTGAAG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	385
FaeI	CATG	1 cut(s)	391
FatI	CATG	1 cut(s)	387
FauNDI	CATATG	2 cut(s)	132, 181
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	741
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	741
FspAI	RTGCGCAY	1 cut(s)	178
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	741
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	4 cut(s)	164, 199, 674, 712
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	532, 625
Hpy188I	TCNGA	6 cut(s)	37, 60, 204, 429, 508, 611
Hpy188III	TCNNGA	6 cut(s)	23, 41, 373, 388, 651, 798
Hpy8I	GTNNAC	2 cut(s)	532, 625
HpyAV	CCTTC	3 cut(s)	344, 349, 547
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	465, 487, 501, 734, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 749
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	37, 329
LpnPI	CCDG	5 cut(s)	26, 222, 318, 444, 631
LweI	GCATC	2 cut(s)	391, 721
MaeIII	GTNAC	2 cut(s)	446, 475
MalI	GATC	2 cut(s)	39, 331
MboI	GATC	2 cut(s)	37, 329
MboII	GAAGA	6 cut(s)	16, 208, 227, 314, 569, 666
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	9 cut(s)	18, 228, 297, 318, 366, 423, 467, 603, 765
MlyI	GAGTC	1 cut(s)	683
MnlI	CCTC	5 cut(s)	205, 247, 369, 605, 653
MseI	TTAA	3 cut(s)	419, 524, 768
MslI	CAYNNNNRTG	4 cut(s)	92, 172, 492, 705
MspCI	CTTAAG	1 cut(s)	418
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	740, 749
NdeI	CATATG	2 cut(s)	132, 181
NdeII	GATC	2 cut(s)	37, 329
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	446, 475
NsbI	TGCGCA	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	492
PagI	TCATGA	1 cut(s)	387
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	164, 199, 712
PkrI	GCNGC	1 cut(s)	742
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	146, 599
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	2 cut(s)	125, 226
RsaNI	GTAC	2 cut(s)	124, 225
RseI	CAYNNNNRTG	4 cut(s)	92, 172, 492, 705
SaqAI	TTAA	3 cut(s)	419, 524, 768
SatI	GCNGC	1 cut(s)	741
Sau3AI	GATC	2 cut(s)	37, 329
Sau96I	GGNCC	2 cut(s)	146, 599
SchI	GAGTC	1 cut(s)	683
SetI	ASST	8 cut(s)	281, 313, 355, 380, 515, 596, 616, 645
SfaNI	GCATC	2 cut(s)	391, 721
SinI	GGWCC	2 cut(s)	146, 599
SmiMI	CAYNNNNRTG	4 cut(s)	92, 172, 492, 705
SmlI	CTYRAG	2 cut(s)	137, 418
SmoI	CTYRAG	2 cut(s)	137, 418
Sse9I	AATT	9 cut(s)	18, 228, 297, 318, 366, 423, 467, 603, 765
SsiI	CCGC	1 cut(s)	740
SspI	AATATT	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	587
TasI	AATT	9 cut(s)	18, 228, 297, 318, 366, 423, 467, 603, 765
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	3 cut(s)	164, 199, 712
Tru1I	TTAA	3 cut(s)	419, 524, 768
Tru9I	TTAA	3 cut(s)	419, 524, 768
TscAI	CASTG	2 cut(s)	19, 463
TseFI	GTSAC	2 cut(s)	446, 475
Tsp45I	GTSAC	2 cut(s)	446, 475
TspDTI	ATGAA	3 cut(s)	17, 177, 281
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	2 cut(s)	19, 463
Vha464I	CTTAAG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	146, 599
XapI	RAATTY	3 cut(s)	18, 423, 467
XmiI	GTMKAC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.