Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015524

Physical Location & Seq

Genomic Coordinates Forward (+)

26460213 .. 26464634

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGGGATGTCAAAGAATGGCATGAAATGTACAGACATTTGCTTGAACTAGAACCGCAATCAGTGAGAGCATCATTTGACTGCGCAAAAAAGTATTTAAATGACTTCCTAAAAAAGAATCAAAGGAGTGGGAATAGTTTTGGCACAATTATTGCCGGATACCACAAAGAAGAGGGCTTTCAAATTCTAGGTGTTTCGCTAGACAAGAAAAAAGTACGCGAATACACTGATCGAGAGTTTTCAATAGGATCTGGTGGTTTCTTTGCTGACCTAGTTCTTCTCAAAACTAATGCTGACGGTTATGCTAACATGACCAAAGAAGTTGCTGTTAATGTGGCCTTTGAAGCTCTATTGCAAGGAAGTTTGAAAGATTATTGCTCCGGTGGAATTCTGAGGGTGACATACGTGCATAAAGATGGTTGCATTTTTATTACGTATCGGGTTCTAGATGTCTACAAAACACTGTACAAAACATTGTATGACTCAGCGGACAAGGAAGAACAAGCTACTTTGTTCTTGCTATATTCTACAAGCTTTGGGCCTATTTTCGGAGGAGATAATATACAAGCACTCATAAGCGACATCTGGTCAGGAGGACTAAAGAGTATTATCCATTCTAATATCATAGCAAAAAAGGCTTGCTTTTATGTTCATCGTATAGTGCTCAAAGATGAAAAGGAGGCTATAAAAGCATACGATGACATAAGCACTAAAAATGCTAGGCCCATTTATCCTCAGGCTTTAGCTCATATTCGAAGCTACTTAATTGATTGTGCCAGAGAAATCAGAAGTGGTGAAATTGTTGCTTTGAAAAGGATACGTATGGATAATGAAAAAGAAGGGTTTCCTATTACAGCAATTCAGAAAATTAAGCTTCTGAAGAAGCTTCATCATGAAAATATTATTAAGCTGAAAGAGATTGCAACTTCTGCAGGTCCTGAAAAGAATGATCGAGAGAATCAAGATAGTAAAAAGCTTGAGGGTGGCATCTATATGATAAAGTGTTATATGAAGCAGTTGTTAACTGGGTTCCATTACTGTCATGTTAATCAAGTACTTCATCGCGACATGAAAGGTTCTAATCTTTTGTTAGATAATGAGGGAAAATTGAAGCTAGCAGAATTTGGGCTCGCAAAATCCTTTGCTACCAACCATATGATGGGCAGCTTACAAATCGTGTTATTACATTGTGGTATAGGCCCTCAGAGTTGCTGCTTGGAGCTACAAAGTGTGGACGAGCTGTCGGCATGTGGTCTGTTGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

422

Amino Acids

47.53

Weight (kDa)

8.46

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	259 - 385	1.3e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	335 - 383	1.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821
rosa_laevigata	RLG00000018060
rosa_roxburghii	Rroxscaffold_2G00129900
rosa_rugosa	Rorug02G0187200
rosa_samantha	Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600
rosa_wichuraiana	Rw2G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	1159
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	2 cut(s)	219, 1065
AciI	CCGC	2 cut(s)	56, 488
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	3 cut(s)	183, 387, 1121
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	4 cut(s)	32, 216, 467, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	548, 1159
AgsI	TTSAA	7 cut(s)	47, 182, 243, 344, 367, 811, 1111
AhdI	GACNNNNNGTC	2 cut(s)	586, 1240
Alw21I	GWGCWC	1 cut(s)	666
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	4 cut(s)	336, 539, 722, 1198
ApeKI	GCWGC	2 cut(s)	1164, 1212
ApoI	RAATTY	3 cut(s)	183, 387, 1121
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	539, 723, 935, 1199
AsuHPI	GGTGA	2 cut(s)	409, 806
AsuII	TTCGAA	1 cut(s)	754
AsuNHI	GCTAGC	1 cut(s)	1114
AvaII	GGWCC	1 cut(s)	935
AxyI	CCTNAGG	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	1131
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	1176, 1199
BccI	CCATC	2 cut(s)	410, 1153
BciVI	GTATCC	2 cut(s)	152, 810
BfaI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 1115
BfmI	CTRYAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	923
BfuI	GTATCC	2 cut(s)	152, 810
BisI	GCNGC	2 cut(s)	1165, 1213
BlsI	GCNGC	2 cut(s)	1166, 1214
BmcAI	AGTACT	1 cut(s)	1056
Bme18I	GGWCC	1 cut(s)	935
BmeRI	GACNNNNNGTC	2 cut(s)	586, 1240
BmgT120I	GGNCC	4 cut(s)	539, 723, 935, 1199
BmiI	GGNNCC	1 cut(s)	1031
BmrI	ACTGGG	1 cut(s)	1035
BmsI	GCATC	2 cut(s)	80, 996
BmtI	GCTAGC	1 cut(s)	1118
BmuI	ACTGGG	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	998
BsaAI	YACGTR	3 cut(s)	406, 435, 821
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 1159
Bse1I	ACTGG	1 cut(s)	1030
Bse21I	CCTNAGG	1 cut(s)	735
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	548, 1159
BseMII	CTCAG	4 cut(s)	383, 498, 749, 1217
BseNI	ACTGG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	1176, 1199
Bsh1236I	CGCG	2 cut(s)	219, 1065
BshFI	GGCC	4 cut(s)	338, 541, 724, 1200
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	156, 381
BslI	CCNNNNNNNGG	2 cut(s)	548, 1159
BsnI	GGCC	4 cut(s)	338, 541, 724, 1200
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	666, 1131
Bsp1407I	TGTACA	2 cut(s)	30, 465
Bsp143I	GATC	3 cut(s)	229, 248, 949
Bsp68I	TCGCGA	1 cut(s)	1065
BspACI	CCGC	2 cut(s)	56, 488
BspANI	GGCC	4 cut(s)	338, 541, 724, 1200
BspCNI	CTCAG	4 cut(s)	384, 497, 748, 1216
BspFNI	CGCG	2 cut(s)	219, 1065
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	1 cut(s)	1031
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	923
BspOI	GCTAGC	1 cut(s)	1118
BspPI	GGATC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	754
BsrGI	TGTACA	2 cut(s)	30, 465
BsrI	ACTGG	1 cut(s)	1030
BssMI	GATC	3 cut(s)	229, 248, 949
Bst4CI	ACNGT	3 cut(s)	299, 465, 1040
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	2 cut(s)	30, 465
BstBAI	YACGTR	3 cut(s)	406, 435, 821
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	640, 1116, 1131
BstDEI	CTNAG	4 cut(s)	392, 484, 735, 1203
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	219, 1065
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	232, 251, 952
BstMBI	GATC	3 cut(s)	229, 248, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 929
BstNSI	RCATGY	1 cut(s)	1251
BstSFI	CTRYAG	1 cut(s)	930
BstSNI	TACGTA	2 cut(s)	435, 821
BstUI	CGCG	2 cut(s)	219, 1065
BstV1I	GCAGC	2 cut(s)	1176, 1199
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	2 cut(s)	152, 810
BsuRI	GGCC	4 cut(s)	338, 541, 724, 1200
BtgZI	GCGATG	1 cut(s)	1046
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	69, 225, 461
BtuMI	TCGCGA	1 cut(s)	1065
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	3 cut(s)	640, 1116, 1131
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	4 cut(s)	539, 723, 935, 1199
Csp6I	GTAC	4 cut(s)	31, 215, 466, 1055
CviAII	CATG	7 cut(s)	23, 310, 893, 1043, 1069, 1248, 1266
CviQI	GTAC	4 cut(s)	31, 215, 466, 1055
DdeI	CTNAG	4 cut(s)	392, 484, 735, 1203
DpnI	GATC	3 cut(s)	231, 250, 951
DpnII	GATC	3 cut(s)	229, 248, 949
DraI	TTTAAA	1 cut(s)	99
DriI	GACNNNNNGTC	2 cut(s)	586, 1240
Eam1104I	CTCTTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	2 cut(s)	586, 1240
EarI	CTCTTC	1 cut(s)	165
Eco105I	TACGTA	2 cut(s)	435, 821
Eco24I	GRGCYC	1 cut(s)	1131
Eco47I	GGWCC	1 cut(s)	935
Eco57I	CTGAAG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	2 cut(s)	935, 1199
EcoRI	GAATTC	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	1131
FaeI	CATG	7 cut(s)	26, 313, 896, 1046, 1072, 1251, 1269
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	7 cut(s)	22, 309, 892, 1042, 1068, 1247, 1265
FauNDI	CATATG	1 cut(s)	1155
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	1165, 1213
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	1131
Fsp4HI	GCNGC	2 cut(s)	1165, 1213
FspBI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 1115
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	1165, 1213
HaeIII	GGCC	4 cut(s)	338, 541, 724, 1200
HapII	CCGG	2 cut(s)	156, 381
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	7 cut(s)	26, 313, 896, 1046, 1072, 1251, 1269
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	1023
HindII	GTYRAC	1 cut(s)	1023
HindIII	AAGCTT	4 cut(s)	532, 872, 884, 974
HinfI	GANTC	3 cut(s)	118, 482, 958
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	2 cut(s)	156, 381
HphI	GGTGA	2 cut(s)	409, 806
Hpy166II	GTNNAC	3 cut(s)	454, 1023, 1234
Hpy188I	TCNGA	6 cut(s)	393, 551, 788, 864, 879, 1206
Hpy188III	TCNNGA	8 cut(s)	233, 446, 591, 893, 938, 953, 962, 1064
Hpy8I	GTNNAC	3 cut(s)	454, 1023, 1234
HpyAV	CCTTC	1 cut(s)	833
HpyCH4III	ACNGT	3 cut(s)	299, 465, 1040
HpyCH4IV	ACGT	3 cut(s)	405, 434, 820
HpyCH4V	TGCA	6 cut(s)	355, 409, 423, 923, 932, 1265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 929
HpyF3I	CTNAG	4 cut(s)	392, 484, 735, 1203
HpySE526I	ACGT	3 cut(s)	405, 434, 820
Hsp92II	CATG	7 cut(s)	26, 313, 896, 1046, 1072, 1251, 1269
HspAI	GCGC	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	1023
Kzo9I	GATC	3 cut(s)	229, 248, 949
LmnI	GCTCC	2 cut(s)	383, 1219
Lsp1109I	GCAGC	2 cut(s)	1176, 1199
LweI	GCATC	2 cut(s)	80, 996
MaeI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 1115
MaeII	ACGT	3 cut(s)	405, 434, 820
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	231, 250, 951
MboI	GATC	3 cut(s)	229, 248, 949
MboII	GAAGA	4 cut(s)	182, 269, 509, 892
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	666, 1131
MluCI	AATT	9 cut(s)	147, 183, 387, 765, 798, 858, 867, 1106, 1121
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	166, 387, 545, 587, 673, 744, 973, 1093, 1212
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	7 cut(s)	98, 330, 764, 870, 906, 1022, 1047
MslI	CAYNNNNRTG	2 cut(s)	414, 992
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	156, 381
MvnI	CGCG	2 cut(s)	219, 1065
MwoI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 929
NdeI	CATATG	1 cut(s)	1155
NdeII	GATC	3 cut(s)	229, 248, 949
NheI	GCTAGC	1 cut(s)	1114
NlaIII	CATG	7 cut(s)	26, 313, 896, 1046, 1072, 1251, 1269
NlaIV	GGNNCC	1 cut(s)	1031
NmuCI	GTSAC	1 cut(s)	397
NruI	TCGCGA	1 cut(s)	1065
NsbI	TGCGCA	1 cut(s)	85
NspI	RCATGY	1 cut(s)	1251
NspV	TTCGAA	1 cut(s)	754
PagI	TCATGA	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	118, 958
PflMI	CCANNNNNTGG	1 cut(s)	1159
PkrI	GCNGC	2 cut(s)	1166, 1214
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	3 cut(s)	406, 435, 821
PpuMI	RGGWCCY	1 cut(s)	935
Psp5II	RGGWCCY	1 cut(s)	935
PspN4I	GGNNCC	1 cut(s)	1031
PspPI	GGNCC	4 cut(s)	539, 723, 935, 1199
PspPPI	RGGWCCY	1 cut(s)	935
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	248
RruI	TCGCGA	1 cut(s)	1065
RsaI	GTAC	4 cut(s)	32, 216, 467, 1056
RsaNI	GTAC	4 cut(s)	31, 215, 466, 1055
RseI	CAYNNNNRTG	2 cut(s)	414, 992
SaqAI	TTAA	7 cut(s)	98, 330, 764, 870, 906, 1022, 1047
SatI	GCNGC	2 cut(s)	1165, 1213
Sau3AI	GATC	3 cut(s)	229, 248, 949
Sau96I	GGNCC	4 cut(s)	539, 723, 935, 1199
ScaI	AGTACT	1 cut(s)	1056
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	666, 1131
SfaNI	GCATC	2 cut(s)	80, 996
SfcI	CTRYAG	1 cut(s)	930
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	935
SmiI	ATTTAAAT	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	414, 992
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
SnaBI	TACGTA	2 cut(s)	435, 821
Sse9I	AATT	9 cut(s)	147, 183, 387, 765, 798, 858, 867, 1106, 1121
SsiI	CCGC	2 cut(s)	56, 488
SspI	AATATT	1 cut(s)	901
SspMI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 1115
SwaI	ATTTAAAT	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	299, 465, 1040
TaiI	ACGT	3 cut(s)	408, 437, 823
TaqI	TCGA	3 cut(s)	232, 754, 952
TasI	AATT	9 cut(s)	147, 183, 387, 765, 798, 858, 867, 1106, 1121
TatI	WGTACW	3 cut(s)	30, 465, 1054
TfiI	GAWTC	2 cut(s)	118, 958
Tru1I	TTAA	7 cut(s)	98, 330, 764, 870, 906, 1022, 1047
Tru9I	TTAA	7 cut(s)	98, 330, 764, 870, 906, 1022, 1047
TscAI	CASTG	3 cut(s)	69, 232, 468
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	1164, 1212
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	9 cut(s)	39, 641, 687, 846, 878, 909, 1025, 1049, 1085
TspRI	CASTG	3 cut(s)	69, 232, 468
Van91I	CCANNNNNTGG	1 cut(s)	1159
VpaK11BI	GGWCC	1 cut(s)	935
XapI	RAATTY	3 cut(s)	183, 387, 1121
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	1 cut(s)	1251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 1115
ZrmI	AGTACT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.