Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015524

Physical Location & Seq

Genomic Coordinates Forward (+)

25806226 .. 25810503

Gene Structure 4278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG245700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGAAGCAGCACCTCCATGGAACAACCAATGTTGGTTTTGTGTTTGGAGAAGGCATTATGCTGGGGAGCGGTGCAATAATCACAACTTCCAACACGGATGAAGGCGGCACTGAATTGTCAGATCAGGAAGTCACAATATTTCAATTATGTTCCAAACCCAAAATATATTGTACTTTGATGGGGGATGTCAAAGAATGGCATGAAATGTACAGACATTTGCTTGAACTGGAACCGCAATCAGTGAGAGCATCATTTGACTGCGCAAAAAAGTATTTAAATGACTTCCTAAAAAAGAATCGAAGGAGTGGGAATAGTTTTGGCACAATTATTGCCGGATACCACAAAGAAGAGGGCTTTCAAATTCTAGGTGTTTCACTAGACAAGAAAAAAGTACGCGAATACACTGATCGAGAGTTTTCAATAGGATCTGGTGGTTTCTTTGCTGACCTAGTTCTTCTCAAAACTAATGCTGACGGTTATGCTAACATGACCAAAGAAGTTGCTGTTAATGTGGCCTTTGAAGCTCTATTGCAAGGAAGTTTGAAAGATTATTGCTCCGGTGGAATTCTGAGGGTGACATACGTGCATAAAGATGGTTGCATTTTTATTACGTATCGGGTTCTAGATGTCTACAAAACACTATACAAAACATTGTATGACTCAGCGGACAAGGAAGAACAAGCTACTTTGTTCTTGCTATATTCTACAAGTTTTGGTCCTATTTTCAGAGGAGATAATATACAAGCACTCATAAGCGACATCTGGTCAGGAGGACTAAAGAGTATTATCCATTCTAATATCATAGCAAAAAAGGCTTGCTTTTATGTTCATCGTATAGTGCTCAAAGATGAAGAGGAGGCTATAAAAGCATACGATGACATAAGCACTAAAAATGCTAGGCCCATTTATCCTCAGGCTTTAGCTCATATTCGAAGCTACTTAATTGATTGTGGGAATGAGGAGGTGAACATGCGTTGGCAAGTGAATGATGGCAGAACCATTGATGTATGGAAAGATAGATTGGGCGTGAAGATTGCTAAGGATGAGATTACCACTCTGGATACTTGCCAAGTCTTCAAGGCCAGAGAAATCAGAAGTGGTGAAATTGTTGCTTTGAAAAGGATACGTCCTGAAAAGAATGATCAAGAGAATCAAGATAGTAAAAAGCTTGAGGGTGGCATCTATATGGTTTCTGAGTATATGGATCATAATTTGACAGGCCTTGCTGATCGTCCTGGAGTTAGATATTCAATTCGTACTTCATCGCGACATGAAAGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

428

Amino Acids

48.55

Weight (kDa)

6.84

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	7 - 195	3.1e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821
rosa_laevigata	RLG00000018060
rosa_roxburghii	Rroxscaffold_2G00129900
rosa_rugosa	Rorug02G0187200
rosa_samantha	Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600
rosa_wichuraiana	Rw2G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	2 cut(s)	399, 1270
AciI	CCGC	4 cut(s)	72, 108, 236, 668
AclWI	GGATC	2 cut(s)	436, 1215
AcsI	RAATTY	2 cut(s)	363, 567
AfaI	GTAC	4 cut(s)	175, 212, 396, 1261
AgsI	TTSAA	9 cut(s)	146, 227, 362, 423, 524, 547, 1081, 1120, 1254
AhdI	GACNNNNNGTC	1 cut(s)	766
AjnI	CCWGG	1 cut(s)	1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AluBI	AGCT	5 cut(s)	527, 686, 926, 939, 1171
AluI	AGCT	5 cut(s)	527, 686, 926, 939, 1171
Alw21I	GWGCWC	1 cut(s)	846
AlwI	GGATC	2 cut(s)	436, 1215
AoxI	GGCC	4 cut(s)	516, 902, 1083, 1222
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	363, 567
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	719, 903
AsuHPI	GGTGA	3 cut(s)	589, 979, 1115
AsuII	TTCGAA	1 cut(s)	934
AvaII	GGWCC	1 cut(s)	719
AxyI	CCTNAGG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	1069
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	175, 590, 986
BciT130I	CCWGG	1 cut(s)	1239
BciVI	GTATCC	3 cut(s)	332, 1057, 1119
BclI	TGATCA	1 cut(s)	1144
BfaI	CTAG	5 cut(s)	368, 380, 452, 626, 900
BfuI	GTATCC	3 cut(s)	332, 1057, 1119
BisI	GCNGC	2 cut(s)	11, 109
BlsI	GCNGC	2 cut(s)	12, 110
Bme1390I	CCNGG	1 cut(s)	1239
Bme18I	GGWCC	1 cut(s)	719
BmeRI	GACNNNNNGTC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	719, 903
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	1239
BmsI	GCATC	2 cut(s)	260, 1191
BpiI	GAAGAC	1 cut(s)	1069
BpmI	CTGGAG	1 cut(s)	1260
Bpu10I	CCTNAGC	1 cut(s)	1041
Bpu14I	TTCGAA	1 cut(s)	934
BpuEI	CTTGAG	1 cut(s)	1193
BsaAI	YACGTR	2 cut(s)	586, 615
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	234
Bse21I	CCTNAGG	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	1239
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	106, 193, 1051
BseMII	CTCAG	4 cut(s)	563, 678, 929, 1188
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	3 cut(s)	747, 872, 977
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	399, 1270
BshFI	GGCC	4 cut(s)	518, 904, 1085, 1224
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	336, 561
BsnI	GGCC	4 cut(s)	518, 904, 1085, 1224
Bsp119I	TTCGAA	1 cut(s)	934
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
Bsp19I	CCATGG	1 cut(s)	19
Bsp68I	TCGCGA	1 cut(s)	1270
BspACI	CCGC	4 cut(s)	72, 108, 236, 668
BspANI	GGCC	4 cut(s)	518, 904, 1085, 1224
BspCNI	CTCAG	4 cut(s)	564, 677, 928, 1189
BspFNI	CGCG	2 cut(s)	399, 1270
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	436, 1215
BspT104I	TTCGAA	1 cut(s)	934
BsrBI	CCGCTC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	1239
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	345, 849
BstAUI	TGTACA	1 cut(s)	210
BstBAI	YACGTR	2 cut(s)	586, 615
BstBI	TTCGAA	1 cut(s)	934
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	5 cut(s)	572, 664, 915, 1041, 1197
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	106, 193, 1051
BstFNI	CGCG	2 cut(s)	399, 1270
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	6 cut(s)	127, 412, 431, 1147, 1210, 1234
BstMBI	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 815, 869
BstNI	CCWGG	1 cut(s)	1239
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	1 cut(s)	1237
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	2 cut(s)	399, 1270
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	1069
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
Bsu36I	CCTNAGG	1 cut(s)	915
BsuI	GTATCC	3 cut(s)	332, 1057, 1119
BsuRI	GGCC	4 cut(s)	518, 904, 1085, 1224
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	1251
BtsCI	GGATG	3 cut(s)	106, 193, 1051
BtsIMutI	CAGTG	3 cut(s)	111, 249, 405
BtuMI	TCGCGA	1 cut(s)	1270
Cac8I	GCNNGC	1 cut(s)	820
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	719, 903
Csp6I	GTAC	4 cut(s)	174, 211, 395, 1260
CviAII	CATG	5 cut(s)	20, 203, 490, 973, 1274
CviQI	GTAC	4 cut(s)	174, 211, 395, 1260
DdeI	CTNAG	5 cut(s)	572, 664, 915, 1041, 1197
DpnI	GATC	6 cut(s)	126, 411, 430, 1146, 1209, 1233
DpnII	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
DraI	TTTAAA	1 cut(s)	279
DriI	GACNNNNNGTC	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	345, 849
Eam1105I	GACNNNNNGTC	1 cut(s)	766
EarI	CTCTTC	2 cut(s)	345, 849
Eco105I	TACGTA	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	1224
Eco47I	GGWCC	1 cut(s)	719
Eco81I	CCTNAGG	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	1237
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	23, 206, 493, 976, 1277
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FatI	CATG	5 cut(s)	19, 202, 489, 972, 1273
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	2 cut(s)	11, 109
FokI	GGATG	3 cut(s)	113, 200, 1058
Fsp4HI	GCNGC	2 cut(s)	11, 109
FspBI	CTAG	5 cut(s)	368, 380, 452, 626, 900
FspI	TGCGCA	1 cut(s)	265
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	11, 109
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	1260
HaeIII	GGCC	4 cut(s)	518, 904, 1085, 1224
HapII	CCGG	2 cut(s)	336, 561
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	5 cut(s)	23, 206, 493, 976, 1277
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	3 cut(s)	298, 662, 1153
HpaII	CCGG	2 cut(s)	336, 561
HphI	GGTGA	3 cut(s)	589, 979, 1115
Hpy166II	GTNNAC	2 cut(s)	634, 970
Hpy188I	TCNGA	5 cut(s)	124, 573, 731, 1097, 1198
Hpy188III	TCNNGA	9 cut(s)	128, 413, 626, 771, 1061, 1133, 1148, 1157, 1269
Hpy8I	GTNNAC	2 cut(s)	634, 970
HpyAV	CCTTC	3 cut(s)	47, 98, 297
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	3 cut(s)	585, 614, 1129
HpyCH4V	TGCA	4 cut(s)	77, 535, 589, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 815, 869
HpyF3I	CTNAG	5 cut(s)	572, 664, 915, 1041, 1197
HpySE526I	ACGT	3 cut(s)	585, 614, 1129
Hsp92II	CATG	5 cut(s)	23, 206, 493, 976, 1277
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	1144
Kzo9I	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
LmnI	GCTCC	2 cut(s)	69, 563
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	260, 1191
MaeI	CTAG	5 cut(s)	368, 380, 452, 626, 900
MaeII	ACGT	3 cut(s)	585, 614, 1129
MaeIII	GTNAC	2 cut(s)	133, 577
MalI	GATC	6 cut(s)	126, 411, 430, 1146, 1209, 1233
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
MboII	GAAGA	6 cut(s)	362, 449, 689, 866, 1045, 1069
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	9 cut(s)	116, 146, 327, 363, 567, 945, 1107, 1213, 1254
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	3 cut(s)	278, 510, 944
MslI	CAYNNNNRTG	3 cut(s)	18, 594, 1187
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	2 cut(s)	336, 561
MspR9I	CCNGG	1 cut(s)	1239
MvaI	CCWGG	1 cut(s)	1239
MvnI	CGCG	2 cut(s)	399, 1270
MwoI	GCNNNNNNNGC	3 cut(s)	524, 815, 869
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
NlaIII	CATG	5 cut(s)	23, 206, 493, 976, 1277
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	2 cut(s)	133, 577
NruI	TCGCGA	1 cut(s)	1270
NsbI	TGCGCA	1 cut(s)	265
NspI	RCATGY	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	1224
PfeI	GAWTC	2 cut(s)	298, 1153
PfoI	TCCNGGA	1 cut(s)	1237
PkrI	GCNGC	2 cut(s)	12, 110
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	2 cut(s)	586, 615
Psp6I	CCWGG	1 cut(s)	1237
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	1237
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	719, 903
PsuI	RGATCY	1 cut(s)	428
RruI	TCGCGA	1 cut(s)	1270
RsaI	GTAC	4 cut(s)	175, 212, 396, 1261
RsaNI	GTAC	4 cut(s)	174, 211, 395, 1260
RseI	CAYNNNNRTG	3 cut(s)	18, 594, 1187
SaqAI	TTAA	3 cut(s)	278, 510, 944
SatI	GCNGC	2 cut(s)	11, 109
Sau3AI	GATC	6 cut(s)	124, 409, 428, 1144, 1207, 1231
Sau96I	GGNCC	2 cut(s)	719, 903
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	1239
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	2 cut(s)	260, 1191
SfuI	TTCGAA	1 cut(s)	934
SinI	GGWCC	1 cut(s)	719
SmiI	ATTTAAAT	1 cut(s)	279
SmiMI	CAYNNNNRTG	3 cut(s)	18, 594, 1187
SmlI	CTYRAG	1 cut(s)	1172
SmoI	CTYRAG	1 cut(s)	1172
SnaBI	TACGTA	1 cut(s)	615
Sse9I	AATT	9 cut(s)	116, 146, 327, 363, 567, 945, 1107, 1213, 1254
SseBI	AGGCCT	1 cut(s)	1224
SsiI	CCGC	4 cut(s)	72, 108, 236, 668
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	5 cut(s)	368, 380, 452, 626, 900
StuI	AGGCCT	1 cut(s)	1224
StyD4I	CCNGG	1 cut(s)	1237
StyI	CCWWGG	1 cut(s)	19
SwaI	ATTTAAAT	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	3 cut(s)	588, 617, 1132
TaqI	TCGA	3 cut(s)	301, 412, 934
TasI	AATT	9 cut(s)	116, 146, 327, 363, 567, 945, 1107, 1213, 1254
TatI	WGTACW	2 cut(s)	173, 210
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	298, 1153
Tru1I	TTAA	3 cut(s)	278, 510, 944
Tru9I	TTAA	3 cut(s)	278, 510, 944
TscAI	CASTG	3 cut(s)	118, 249, 412
TseFI	GTSAC	2 cut(s)	133, 577
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	133, 577
TspDTI	ATGAA	6 cut(s)	20, 117, 219, 821, 867, 1254
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	3 cut(s)	118, 249, 412
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	363, 567
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	1 cut(s)	976
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	5 cut(s)	368, 380, 452, 626, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.