Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015524

Physical Location & Seq

Genomic Coordinates Forward (+)

25665998 .. 25670753

Gene Structure 4756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGGGGATGTCAAAGAATGGCATGAAATGTACAGACATTTGCTTGAACTAGAACCGCAATCAGTGAGAGCATCATTTGACTGCGCAAAAAAGTATTTAAATGACTTCCTAAAAAAGAATCGAAGGAGTGGGAATAGTTTTGGCACAATTATTGCCGGATACCACAAAGAAGAGGGCTTTCAAATTCTAGGTGTTTCACTAGACAAGAAAAAAGTACGCGAATACACTGATCGAGAGTTTTCAATAGGATCTGGTGGTTTCTTTGCTGACCTAGTTCTTCTCAAAACTAATGCTGACGGTTATGCTAACATGACCAAAGAAGTTGCTGTTAATGTGGCCTTTGAAGCTCTATTGCAAGGAAGTTTGAAAGATTATTGCTCCGGTGGAATTCTGAGGGTGACATACGTGCATAAAGATGGTTGCATTTTTATTACGTATCGGGTTCTAGATGTCTACAAAACACTATACAAAACATTGTATGACTCAGCGGACAAGGAAGAACAAGCTACTTTGTTCTTGCTATATTCTACAAGTTTTGGTCCTATTTTCGGAGGAGATAATATACAAGCACTCATAAGCGACATCTGGTCAGGAGGACTAAAGAGTATTATCCATTCTAATATCATAGCAAAAAAGGCTTGCTTTTATGTTCATCGTATAGTGCTCAAAGATGAAGAGGAGGCTATAAAAGCATACGATGACATAAGCACTAAAAATGCTAGGCCCATTTATCCTCAGGCTTTAGCTCATATTCGAAGCTACTTAATTGATTGTGTAAGAGAAAAAACTAGAGAGCATGTTTACATTGGAAGGAGCTCCAAGGAGTTGTTAGAAGGCATATGCATGTTGAAGGATGCAGATACTTTAAAATTGGGCGTGAAGATTGCTAAGGATGAGATTACCACTCTGGATACTTGCCAAGTCTTCAAGGCCAGAGAAATCAGAAGTGGTGAAATTGTTGCTTTGAAAAGGATACGTATGGATAATGAAAAAGAAGGGTTTCCTATTACAGCAATTCAGAAAATTAAGCTTCTGAAGAAGCTTCATCATGAAAATATTATTAAGCTGAAAGAGATTGTAACTTCTGCAGGTCCTGAAAAGAATGATCAAGAGAATCAAGATAGTAAAAAGCTTGAGGGTGGCATCTATATGAATTTCAATTGTGTCCATTGGTCAAAATATTTACGTGGCCTTGAAGGGAGACTCAAAAGTGATGGCCTTGTTGGCCTTGAGGTGCCTGACCAACTGAACAAGATATTTGAGCTTTGTGGATCGCCTGATGAGAACAACTGGCCTGGTGTTTCAAAATATTATTTTTATAACAATTTCAAGTCACCAAGGCCCCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

450

Amino Acids

51.25

Weight (kDa)

8.59

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	306 - 362	1.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20800 FvH4_1g20821
rosa_laevigata	RLG00000018060
rosa_roxburghii	Rroxscaffold_2G00129900
rosa_rugosa	Rorug02G0187200
rosa_samantha	Rh2AG241600 Rh2BG255600 Rh2CG245700 Rh2DG249600
rosa_wichuraiana	Rw2G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1320
Acc16I	TGCGCA	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	1234
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	56, 488
AclWI	GGATC	2 cut(s)	256, 1279
AcsI	RAATTY	3 cut(s)	183, 387, 1153
AcuI	CTGAAG	1 cut(s)	1055
AfaI	GTAC	2 cut(s)	32, 216
AfiI	CCNNNNNNNGG	1 cut(s)	548
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	1294
Alw21I	GWGCWC	2 cut(s)	666, 818
Alw26I	GTCTC	1 cut(s)	1195
AlwI	GGATC	2 cut(s)	256, 1279
AlwNI	CAGNNNCTG	1 cut(s)	1094
AoxI	GGCC	8 cut(s)	336, 722, 930, 1189, 1216, 1225, 1292, 1340
ApoI	RAATTY	3 cut(s)	183, 387, 1153
Asp700I	GAANNNNTTC	1 cut(s)	999
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	539, 723, 1091, 1341
AsuHPI	GGTGA	3 cut(s)	409, 962, 1326
AsuII	TTCGAA	1 cut(s)	754
AvaII	GGWCC	2 cut(s)	539, 1091
AxyI	CCTNAGG	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	1234
BanII	GRGCYC	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	2 cut(s)	666, 818
BccI	CCATC	2 cut(s)	410, 1208
BciT130I	CCWGG	1 cut(s)	1296
BciVI	GTATCC	3 cut(s)	152, 904, 966
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	1 cut(s)	1195
BfaI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 789
BfmI	CTRYAG	1 cut(s)	1086
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	3 cut(s)	152, 904, 966
BglI	GCCNNNNNGGC	1 cut(s)	1224
Bme1390I	CCNGG	1 cut(s)	1296
Bme18I	GGWCC	2 cut(s)	539, 1091
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	4 cut(s)	539, 723, 1091, 1341
BmiI	GGNNCC	2 cut(s)	1236, 1343
BmrFI	CCNGG	1 cut(s)	1296
BmsI	GCATC	3 cut(s)	80, 844, 1152
BpiI	GAAGAC	1 cut(s)	916
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	1154, 1250
BsaAI	YACGTR	4 cut(s)	406, 435, 977, 1187
BsaJI	CCNNGG	2 cut(s)	819, 1337
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	1295
Bse21I	CCTNAGG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	1296
BseDI	CCNNGG	2 cut(s)	819, 1337
BseGI	GGATG	3 cut(s)	13, 859, 898
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	383, 498, 749
BseNI	ACTGG	1 cut(s)	1295
BseRI	GAGGAG	2 cut(s)	567, 692
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	8 cut(s)	338, 724, 932, 1191, 1218, 1227, 1294, 1342
BshNI	GGYRCC	1 cut(s)	1234
BsiHKAI	GWGCWC	2 cut(s)	666, 818
BsiSI	CCGG	2 cut(s)	156, 381
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	1195
BsnI	GGCC	8 cut(s)	338, 724, 932, 1191, 1218, 1227, 1294, 1342
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	666, 818
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	229, 248, 1105, 1271
BspACI	CCGC	2 cut(s)	56, 488
BspANI	GGCC	8 cut(s)	338, 724, 932, 1191, 1218, 1227, 1294, 1342
BspCNI	CTCAG	3 cut(s)	384, 497, 748
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	2 cut(s)	1236, 1343
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	2 cut(s)	256, 1279
BspT104I	TTCGAA	1 cut(s)	754
BspT107I	GGYRCC	1 cut(s)	1234
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	1295
BssECI	CCNNGG	2 cut(s)	819, 1337
BssMI	GATC	4 cut(s)	229, 248, 1105, 1271
BssT1I	CCWWGG	2 cut(s)	819, 1337
Bst2UI	CCWGG	1 cut(s)	1296
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	165, 669
BstAUI	TGTACA	1 cut(s)	30
BstBAI	YACGTR	4 cut(s)	406, 435, 977, 1187
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	4 cut(s)	392, 484, 735, 888
BstF5I	GGATG	3 cut(s)	13, 859, 898
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	232, 251, 1108, 1274
BstMAI	GTCTC	1 cut(s)	1195
BstMBI	GATC	4 cut(s)	229, 248, 1105, 1271
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 1224
BstNI	CCWGG	1 cut(s)	1296
BstNSI	RCATGY	2 cut(s)	800, 847
BstSCI	CCNGG	1 cut(s)	1294
BstSFI	CTRYAG	1 cut(s)	1086
BstSNI	TACGTA	2 cut(s)	435, 977
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	3 cut(s)	152, 904, 966
BsuRI	GGCC	8 cut(s)	338, 724, 932, 1191, 1218, 1227, 1294, 1342
BtsCI	GGATG	3 cut(s)	13, 859, 898
BtsIMutI	CAGTG	2 cut(s)	69, 225
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	1 cut(s)	640
CaiI	CAGNNNCTG	1 cut(s)	1094
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	4 cut(s)	539, 723, 1091, 1341
Csp6I	GTAC	2 cut(s)	31, 215
CviAII	CATG	5 cut(s)	23, 310, 797, 844, 1049
CviQI	GTAC	2 cut(s)	31, 215
DdeI	CTNAG	4 cut(s)	392, 484, 735, 888
DpnI	GATC	4 cut(s)	231, 250, 1107, 1273
DpnII	GATC	4 cut(s)	229, 248, 1105, 1271
DraI	TTTAAA	2 cut(s)	99, 867
DriI	GACNNNNNGTC	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	165, 669
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	2 cut(s)	165, 669
Ecl136II	GAGCTC	1 cut(s)	816
Eco105I	TACGTA	2 cut(s)	435, 977
Eco130I	CCWWGG	2 cut(s)	819, 1337
Eco24I	GRGCYC	1 cut(s)	818
Eco47I	GGWCC	2 cut(s)	539, 1091
Eco53kI	GAGCTC	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	1055
Eco81I	CCTNAGG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	816
EcoO109I	RGGNCCY	2 cut(s)	1091, 1341
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	1294
EcoT14I	CCWWGG	2 cut(s)	819, 1337
EcoT22I	ATGCAT	1 cut(s)	845
EcoT38I	GRGCYC	1 cut(s)	818
ErhI	CCWWGG	2 cut(s)	819, 1337
FaeI	CATG	5 cut(s)	26, 313, 800, 847, 1052
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	5 cut(s)	22, 309, 796, 843, 1048
FauNDI	CATATG	1 cut(s)	839
FbaI	TGATCA	1 cut(s)	1105
FblI	GTMKAC	1 cut(s)	453
FokI	GGATG	3 cut(s)	20, 866, 905
FriOI	GRGCYC	1 cut(s)	818
FspBI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 789
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
HaeIII	GGCC	8 cut(s)	338, 724, 932, 1191, 1218, 1227, 1294, 1342
HapII	CCGG	2 cut(s)	156, 381
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	26, 313, 800, 847, 1052
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	3 cut(s)	1028, 1040, 1130
HinfI	GANTC	4 cut(s)	118, 482, 1114, 1203
HpaII	CCGG	2 cut(s)	156, 381
HphI	GGTGA	3 cut(s)	409, 962, 1326
Hpy166II	GTNNAC	2 cut(s)	454, 802
Hpy188I	TCNGA	5 cut(s)	393, 551, 944, 1020, 1035
Hpy188III	TCNNGA	8 cut(s)	233, 446, 591, 908, 1049, 1094, 1109, 1118
Hpy8I	GTNNAC	2 cut(s)	454, 802
HpyAV	CCTTC	6 cut(s)	117, 804, 827, 844, 989, 1190
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	4 cut(s)	405, 434, 976, 1186
HpyCH4V	TGCA	6 cut(s)	355, 409, 423, 843, 857, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 1224
HpyF3I	CTNAG	4 cut(s)	392, 484, 735, 888
HpySE526I	ACGT	4 cut(s)	405, 434, 976, 1186
Hsp92II	CATG	5 cut(s)	26, 313, 800, 847, 1052
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	4 cut(s)	229, 248, 1105, 1271
LmnI	GCTCC	3 cut(s)	383, 813, 821
LweI	GCATC	3 cut(s)	80, 844, 1152
MaeI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 789
MaeII	ACGT	4 cut(s)	405, 434, 976, 1186
MaeIII	GTNAC	3 cut(s)	397, 1078, 1332
MalI	GATC	4 cut(s)	231, 250, 1107, 1273
MboI	GATC	4 cut(s)	229, 248, 1105, 1271
MboII	GAAGA	7 cut(s)	182, 269, 509, 686, 892, 916, 1048
MfeI	CAATTG	1 cut(s)	1159
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	666, 818
MlyI	GAGTC	2 cut(s)	476, 1197
MnlI	CCTC	9 cut(s)	166, 387, 545, 587, 670, 673, 744, 1129, 1225
Mph1103I	ATGCAT	1 cut(s)	845
MroXI	GAANNNNTTC	1 cut(s)	999
MseI	TTAA	6 cut(s)	98, 330, 764, 866, 1026, 1062
MslI	CAYNNNNRTG	3 cut(s)	414, 842, 1148
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	156, 381
MspR9I	CCNGG	1 cut(s)	1296
MunI	CAATTG	1 cut(s)	1159
MvaI	CCWGG	1 cut(s)	1296
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	344, 635, 689, 1224
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	4 cut(s)	229, 248, 1105, 1271
NlaIII	CATG	5 cut(s)	26, 313, 800, 847, 1052
NlaIV	GGNNCC	2 cut(s)	1236, 1343
NmuCI	GTSAC	2 cut(s)	397, 1332
NsbI	TGCGCA	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	845
NspI	RCATGY	2 cut(s)	800, 847
NspV	TTCGAA	1 cut(s)	754
PagI	TCATGA	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	2 cut(s)	118, 1114
PleI	GAGTC	2 cut(s)	476, 1197
PpsI	GAGTC	2 cut(s)	476, 1197
Ppu21I	YACGTR	4 cut(s)	406, 435, 977, 1187
PpuMI	RGGWCCY	1 cut(s)	1091
PsiI	TTATAA	1 cut(s)	1320
Psp124BI	GAGCTC	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	1 cut(s)	1294
PspGI	CCWGG	1 cut(s)	1294
PspN4I	GGNNCC	2 cut(s)	1236, 1343
PspPI	GGNCC	4 cut(s)	539, 723, 1091, 1341
PspPPI	RGGWCCY	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	1090
PstNI	CAGNNNCTG	1 cut(s)	1094
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	2 cut(s)	32, 216
RsaNI	GTAC	2 cut(s)	31, 215
RseI	CAYNNNNRTG	3 cut(s)	414, 842, 1148
SacI	GAGCTC	1 cut(s)	818
SaqAI	TTAA	6 cut(s)	98, 330, 764, 866, 1026, 1062
Sau3AI	GATC	4 cut(s)	229, 248, 1105, 1271
Sau96I	GGNCC	4 cut(s)	539, 723, 1091, 1341
SchI	GAGTC	2 cut(s)	476, 1197
ScrFI	CCNGG	1 cut(s)	1296
SduI	GDGCHC	2 cut(s)	666, 818
SfaNI	GCATC	3 cut(s)	80, 844, 1152
SfcI	CTRYAG	1 cut(s)	1086
SfiI	GGCCNNNNNGGCC	1 cut(s)	1224
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	2 cut(s)	539, 1091
SmiI	ATTTAAAT	1 cut(s)	99
SmiMI	CAYNNNNRTG	3 cut(s)	414, 842, 1148
SmlI	CTYRAG	2 cut(s)	1133, 1229
SmoI	CTYRAG	2 cut(s)	1133, 1229
SnaBI	TACGTA	2 cut(s)	435, 977
SsiI	CCGC	2 cut(s)	56, 488
SspI	AATATT	3 cut(s)	1057, 1181, 1310
SspMI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 789
SstI	GAGCTC	1 cut(s)	818
StyD4I	CCNGG	1 cut(s)	1294
StyI	CCWWGG	2 cut(s)	819, 1337
SwaI	ATTTAAAT	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	4 cut(s)	408, 437, 979, 1189
TaqI	TCGA	3 cut(s)	121, 232, 754
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	118, 1114
Tru1I	TTAA	6 cut(s)	98, 330, 764, 866, 1026, 1062
Tru9I	TTAA	6 cut(s)	98, 330, 764, 866, 1026, 1062
TscAI	CASTG	2 cut(s)	69, 232
TseFI	GTSAC	2 cut(s)	397, 1332
Tsp45I	GTSAC	2 cut(s)	397, 1332
TspDTI	ATGAA	7 cut(s)	39, 641, 687, 1002, 1034, 1065, 1166
TspRI	CASTG	2 cut(s)	69, 232
VpaK11BI	GGWCC	2 cut(s)	539, 1091
XapI	RAATTY	3 cut(s)	183, 387, 1153
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	800, 847
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	7 cut(s)	50, 188, 200, 272, 446, 720, 789
Zsp2I	ATGCAT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.