FvH4_1g21180

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016241
Physical Location & Seq
Forward (+)
13168251 .. 13169716
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21180.t1

Sequence Viewer

Length: 834 bp
ATGGAGGAGCGGGGCCCACCTGCAACCGGCGCCGACGACCTCAATGACGACCCAGCTACAATGGAGGAGCGCGGCCCACCTGCAACCGGCGCCGACGACATCAACGACGACCCAGCTCCCGCGTCAGAGACACAACTAGTACCATATGGCCCGACCCCCAACGATACCTATGTAATCCATTTCCCTAAAGACCAAATCTACCGTGTGCCGCCCCCTGAAAATGCCATACTCGTCGAGAAGCACCGGCCGGTGACCAAGAAGAAAACGTCATGCAAGACTTGGTGTTTGGCGTTCCTTGTCATTTTCCTTGTCCTGTTCTTCATAGCCGGCATAACCGTGGTGACATGGTACTTCGTTTTGAGCCCTAAAACGCCTACATTCTCTATAACGCAGATGAACGTGAAGAAACCATCCAGCAACGATTCAGATGTAGGATATGAGATCTTCTTGAGAGCTGTGAACCCTAATGATAAGATGAGCATACGTTTTGAAAGTGATGAAACTTCTCTTTCAAACGGGGAAAAGGGCATTGCTAAGGGGAAATATCCATCTAATGAACTAGATGGTGATCAGTCGGACGACGTAAAACTTGTTCTAAGCGGAGCAATTACAGCGTTGCCTGACGACGTCCAGGATAGCATAGGAGATACTAGTTCGAACAAGACGTCACCGTTGTCCCTAAATCTGAAAATGAGTGACCTTCCTCTACATATCAAGTATGGATTCTTTAAGAGTTGGGATAAGAAAGCGGAAGTCGAATGCAAATTCAAGGTGGACAAATTTGGGTCGAGTACAAAGATCCTTGAGCAAGATTGTGATACCACATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

278

Amino Acids

30.58

Weight (kDa)

4.84

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 28, 88
AatII GACGTC 2 cut(s) 630, 668
Acc36I ACCTGC 2 cut(s) 28, 88
AccB1I GGYRCC 2 cut(s) 29, 89
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 2 cut(s) 72, 122
AciI CCGC 6 cut(s) 10, 72, 120, 209, 600, 749
AclWI GGATC 1 cut(s) 793
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 2 cut(s) 764, 779
AcyI GRCGYC 4 cut(s) 30, 90, 627, 665
AfaI GTAC 3 cut(s) 141, 350, 793
AfiI CCNNNNNNNGG 2 cut(s) 26, 86
AgsI TTSAA 4 cut(s) 491, 513, 769, 829
AhlI ACTAGT 2 cut(s) 136, 650
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 3 cut(s) 56, 116, 455
AluI AGCT 3 cut(s) 56, 116, 455
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 793
AoxI GGCC 4 cut(s) 13, 73, 148, 245
ApaI GGGCCC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 764, 779
ArsI GACNNNNNNTTYG 4 cut(s) 268, 300, 650, 682
AspLEI GCGC 3 cut(s) 32, 72, 92
AspS9I GGNCC 4 cut(s) 13, 14, 74, 149
AsuHPI GGTGA 4 cut(s) 262, 352, 578, 660
AsuII TTCGAA 1 cut(s) 656
BaeGI GKGCMC 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BanI GGYRCC 2 cut(s) 29, 89
BanII GRGCYC 2 cut(s) 17, 365
BccI CCATC 3 cut(s) 418, 556, 557
BciT130I CCWGG 1 cut(s) 632
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 122
BcuI ACTAGT 2 cut(s) 136, 650
BfaI CTAG 3 cut(s) 137, 560, 651
BfoI RGCGCY 2 cut(s) 33, 93
BfuAI ACCTGC 2 cut(s) 28, 88
BglII AGATCT 1 cut(s) 441
BisI GCNGC 2 cut(s) 73, 209
BlsI GCNGC 2 cut(s) 74, 210
Bme1390I CCNGG 1 cut(s) 632
BmgT120I GGNCC 4 cut(s) 13, 14, 74, 149
BmiI GGNNCC 4 cut(s) 14, 15, 31, 91
BmrFI CCNGG 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 469, 824
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 4 cut(s) 30, 90, 627, 665
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 86
Bse118I RCCGGY 5 cut(s) 26, 86, 243, 247, 326
Bse3DI GCAATG 1 cut(s) 528
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 410
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 26, 86
BseMI GCAATG 1 cut(s) 528
BseRI GAGGAG 2 cut(s) 20, 80
BseSI GKGCMC 1 cut(s) 17
BseX3I CGGCCG 1 cut(s) 245
BseYI CCCAGC 2 cut(s) 52, 112
Bsh1236I CGCG 2 cut(s) 72, 122
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 4 cut(s) 15, 75, 150, 247
BshNI GGYRCC 2 cut(s) 29, 89
BsiEI CGRYCG 1 cut(s) 248
BsiSI CCGG 5 cut(s) 27, 87, 244, 248, 327
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 2 cut(s) 26, 86
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 4 cut(s) 15, 75, 150, 247
Bsp119I TTCGAA 1 cut(s) 656
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 365
Bsp143I GATC 3 cut(s) 441, 568, 798
BspACI CCGC 6 cut(s) 10, 72, 120, 209, 600, 749
BspANI GGCC 4 cut(s) 15, 75, 150, 247
BspFNI CGCG 2 cut(s) 72, 122
BspLI GGNNCC 4 cut(s) 14, 15, 31, 91
BspMI ACCTGC 2 cut(s) 28, 88
BspPI GGATC 1 cut(s) 793
BspT104I TTCGAA 1 cut(s) 656
BspT107I GGYRCC 2 cut(s) 29, 89
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 5 cut(s) 26, 86, 243, 247, 326
BssAI RCCGGY 5 cut(s) 26, 86, 243, 247, 326
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 441, 568, 798
BssNI GRCGYC 4 cut(s) 30, 90, 627, 665
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 3 cut(s) 203, 337, 672
BstACI GRCGYC 4 cut(s) 30, 90, 627, 665
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 534, 596
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 2 cut(s) 72, 122
BstH2I RGCGCY 2 cut(s) 33, 93
BstHHI GCGC 3 cut(s) 32, 72, 92
BstKTI GATC 3 cut(s) 444, 571, 801
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 441, 568, 798
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 3 cut(s) 29, 89, 611
BstNI CCWGG 1 cut(s) 632
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 2 cut(s) 72, 122
BstX2I RGATCY 2 cut(s) 441, 798
BstYI RGATCY 2 cut(s) 441, 798
BstZI CGGCCG 1 cut(s) 245
BsuRI GGCC 4 cut(s) 15, 75, 150, 247
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 410
BveI ACCTGC 2 cut(s) 28, 88
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 3 cut(s) 32, 72, 92
Cfr10I RCCGGY 5 cut(s) 26, 86, 243, 247, 326
Cfr13I GGNCC 4 cut(s) 13, 14, 74, 149
CseI GACGC 1 cut(s) 111
Csp6I GTAC 3 cut(s) 140, 349, 792
CviAII CATG 2 cut(s) 270, 345
CviJI RGCY 9 cut(s) 15, 56, 75, 116, 150, 247, 326, 363, 455
CviKI_1 RGCY 9 cut(s) 15, 56, 75, 116, 150, 247, 326, 363, 455
CviQI GTAC 3 cut(s) 140, 349, 792
DdeI CTNAG 2 cut(s) 534, 596
DinI GGCGCC 2 cut(s) 31, 91
DpnI GATC 3 cut(s) 443, 570, 800
DpnII GATC 3 cut(s) 441, 568, 798
EaeI YGGCCR 1 cut(s) 245
EagI CGGCCG 1 cut(s) 245
EclXI CGGCCG 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 17, 365
Eco52I CGGCCG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 630
EcoT38I GRGCYC 2 cut(s) 17, 365
EgeI GGCGCC 2 cut(s) 31, 91
EheI GGCGCC 2 cut(s) 31, 91
FaeI CATG 2 cut(s) 273, 348
FaqI GGGAC 1 cut(s) 661
FatI CATG 2 cut(s) 269, 344
FauI CCCGC 2 cut(s) 3, 127
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 2 cut(s) 73, 209
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 2 cut(s) 17, 365
Fsp4HI GCNGC 2 cut(s) 73, 209
FspBI CTAG 3 cut(s) 137, 560, 651
GlaI GCGC 3 cut(s) 31, 71, 91
GluI GCNGC 2 cut(s) 73, 209
GsaI CCCAGC 2 cut(s) 56, 116
HaeII RGCGCY 2 cut(s) 33, 93
HaeIII GGCC 4 cut(s) 15, 75, 150, 247
HapII CCGG 5 cut(s) 27, 87, 244, 248, 327
HgaI GACGC 1 cut(s) 111
HhaI GCGC 3 cut(s) 32, 72, 92
Hin1I GRCGYC 4 cut(s) 30, 90, 627, 665
Hin1II CATG 2 cut(s) 273, 348
Hin6I GCGC 3 cut(s) 30, 70, 90
HinP1I GCGC 3 cut(s) 30, 70, 90
HinfI GANTC 2 cut(s) 422, 723
HpaII CCGG 5 cut(s) 27, 87, 244, 248, 327
HphI GGTGA 4 cut(s) 262, 352, 578, 660
Hpy166II GTNNAC 2 cut(s) 460, 775
Hpy188I TCNGA 4 cut(s) 127, 427, 577, 687
Hpy188III TCNNGA 2 cut(s) 235, 448
Hpy8I GTNNAC 2 cut(s) 460, 775
Hpy99I CGWCG 6 cut(s) 38, 98, 110, 236, 584, 629
HpyAV CCTTC 1 cut(s) 710
HpyCH4III ACNGT 3 cut(s) 203, 337, 672
HpyCH4IV ACGT 6 cut(s) 266, 399, 484, 582, 627, 665
HpyCH4V TGCA 4 cut(s) 23, 83, 273, 762
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 89, 611
HpyF3I CTNAG 2 cut(s) 534, 596
HpySE526I ACGT 6 cut(s) 266, 399, 484, 582, 627, 665
Hsp92I GRCGYC 4 cut(s) 30, 90, 627, 665
Hsp92II CATG 2 cut(s) 273, 348
HspAI GCGC 3 cut(s) 30, 70, 90
KasI GGCGCC 2 cut(s) 29, 89
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 441, 568, 798
LmnI GCTCC 4 cut(s) 7, 67, 121, 602
MaeI CTAG 3 cut(s) 137, 560, 651
MaeII ACGT 6 cut(s) 266, 399, 484, 582, 627, 665
MaeIII GTNAC 4 cut(s) 250, 340, 666, 695
MalI GATC 3 cut(s) 443, 570, 800
MbiI CCGCTC 1 cut(s) 10
MboI GATC 3 cut(s) 441, 568, 798
MboII GAAGA 4 cut(s) 271, 310, 415, 436
MflI RGATCY 2 cut(s) 441, 798
MhlI GDGCHC 2 cut(s) 17, 365
MluCI AATT 3 cut(s) 606, 764, 779
Mly113I GGCGCC 2 cut(s) 30, 90
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 3 cut(s) 50, 58, 714
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 335, 829
MspI CCGG 5 cut(s) 27, 87, 244, 248, 327
MspR9I CCNGG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 2 cut(s) 72, 122
MwoI GCNNNNNNNGC 3 cut(s) 29, 89, 611
NaeI GCCGGC 1 cut(s) 328
NarI GGCGCC 2 cut(s) 30, 90
NdeI CATATG 1 cut(s) 145
NdeII GATC 3 cut(s) 441, 568, 798
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 2 cut(s) 273, 348
NlaIV GGNNCC 4 cut(s) 14, 15, 31, 91
NmuCI GTSAC 4 cut(s) 250, 340, 666, 695
NspV TTCGAA 1 cut(s) 656
PaqCI CACCTGC 2 cut(s) 28, 88
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 662
PctI GAATGC 1 cut(s) 764
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 422, 723
PflFI GACNNNGTC 1 cut(s) 626
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 2 cut(s) 74, 210
PluTI GGCGCC 2 cut(s) 33, 93
Psp6I CCWGG 1 cut(s) 630
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 52, 112
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 4 cut(s) 14, 15, 31, 91
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 4 cut(s) 13, 14, 74, 149
PsrI GAACNNNNNNTAC 2 cut(s) 576, 608
PsuI RGATCY 2 cut(s) 441, 798
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 3 cut(s) 141, 350, 793
RsaNI GTAC 3 cut(s) 140, 349, 792
RseI CAYNNNNRTG 2 cut(s) 335, 829
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 73, 209
Sau3AI GATC 3 cut(s) 441, 568, 798
Sau96I GGNCC 4 cut(s) 13, 14, 74, 149
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 2 cut(s) 17, 365
SfoI GGCGCC 2 cut(s) 31, 91
SfuI TTCGAA 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 335, 829
SmlI CTYRAG 2 cut(s) 448, 803
SmoI CTYRAG 2 cut(s) 448, 803
SpeI ACTAGT 2 cut(s) 136, 650
Sse9I AATT 3 cut(s) 606, 764, 779
SsiI CCGC 6 cut(s) 10, 72, 120, 209, 600, 749
SspDI GGCGCC 2 cut(s) 29, 89
SspMI CTAG 3 cut(s) 137, 560, 651
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 3 cut(s) 203, 337, 672
TaiI ACGT 6 cut(s) 269, 402, 487, 585, 630, 668
TaqI TCGA 4 cut(s) 234, 656, 756, 788
TasI AATT 3 cut(s) 606, 764, 779
TatI WGTACW 1 cut(s) 791
TauI GCSGC 2 cut(s) 75, 211
TfiI GAWTC 2 cut(s) 422, 723
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TseFI GTSAC 4 cut(s) 250, 340, 666, 695
Tsp45I GTSAC 4 cut(s) 250, 340, 666, 695
TspDTI ATGAA 4 cut(s) 310, 410, 513, 570
Tth111I GACNNNGTC 1 cut(s) 626
XapI RAATTY 2 cut(s) 764, 779
XspI CTAG 3 cut(s) 137, 560, 651
ZraI GACGTC 2 cut(s) 628, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.