Rroxscaffold_2G00130470

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016241
Physical Location & Seq
Forward (+)
66622004 .. 66622795
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130470.1

Sequence Viewer

Length: 792 bp
ATGGAGGAGCGGGGCCCACCTGCAACCGGCGCCGACGACATCAACGAAGACCCAGCTCCAACGTCAGAGACGCAGCTAGTACCCTATGGTCCTATCCCCCCACCCAACGAAACATACGTAATCCATTTCCCTAAAGACCAAATCTACCGTGTGCCGCCCCCTGAAAATGCCATACACGTCGATAAGCACCGGCCGGTGACCAAGAAGAAATCACGCAAGTCTTGTTGCTGGGCTCTCCTTGTCATTTTGCTTGTCCTGTTCCTCATATTCGGCATTGCCTTGCTGACATGGTACCTCGTTTTGAGCCATAAAGACCCTACATTCTCCATCATTCAGGTCCAAGTGAAGCAATCAAATTCTTCAAACAGCAGCAAGGATTCAGATCTAGGATATGACATCACCTTGAAAGCTGTTAATCCTAATGATAAGATGAGCATACGCTTTGAAAATGGAGGTGGAACTTCCCTTTTATATAGGCAAAAAGACATTGCTAAGGGCAAATTTCCATCTGATCAACTAGATGATGATGAGTCAGACACCGTAAAACTTGTTCTAAACGGAACAAGTGCAGAGTTGCCTAGCGAGGTCCAGCAAAGCATCGAAGAAACTAGTTTGAAGAAGACGACGCCATTGTCCCTAAGTCTGAAAATAAGTGACCTTCCTGTACATATCAAATATGGATTTTTTAAGAGTTGGGATGAGAAAGCAGTAGTCGAATGCAAATTCAAGGTGGACACATTGGGGTCGGGTTCAAAGGTCCTTGAGCAAAATTGTGACACTACATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

263

Amino Acids

29.25

Weight (kDa)

5.79

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 2 cut(s) 29, 291
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 2 cut(s) 10, 155
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 3 cut(s) 355, 500, 722
AcyI GRCGYC 2 cut(s) 30, 626
AfaI GTAC 3 cut(s) 81, 293, 666
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 7 cut(s) 363, 406, 446, 616, 727, 753, 787
AhlI ACTAGT 1 cut(s) 608
AjiI CACGTC 1 cut(s) 178
AluBI AGCT 3 cut(s) 56, 76, 410
AluI AGCT 3 cut(s) 56, 76, 410
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 2 cut(s) 13, 191
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 73, 369
ApoI RAATTY 3 cut(s) 355, 500, 722
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 6 cut(s) 13, 14, 89, 337, 586, 757
AsuHPI GGTGA 2 cut(s) 208, 391
AvaII GGWCC 4 cut(s) 89, 337, 586, 757
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 2 cut(s) 29, 291
BanII GRGCYC 2 cut(s) 17, 235
BbsI GAAGAC 2 cut(s) 54, 626
BbvI GCAGC 2 cut(s) 85, 381
BccI CCATC 2 cut(s) 335, 514
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 5 cut(s) 77, 386, 518, 579, 609
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 382
BisI GCNGC 3 cut(s) 74, 155, 370
BlsI GCNGC 3 cut(s) 75, 156, 371
Bme18I GGWCC 4 cut(s) 89, 337, 586, 757
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 6 cut(s) 13, 14, 89, 337, 586, 757
BmiI GGNNCC 4 cut(s) 14, 15, 31, 293
BmsI GCATC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 54, 626
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 30, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 3 cut(s) 26, 189, 193
Bse3DI GCAATG 2 cut(s) 273, 486
Bse8I GATNNNNATC 1 cut(s) 381
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 273, 486
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 17
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 85, 381
BseYI CCCAGC 2 cut(s) 52, 228
BsgI GTGCAG 1 cut(s) 588
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 15, 193
BshNI GGYRCC 2 cut(s) 29, 291
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 27, 190, 194
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 15, 193
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 235
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 2 cut(s) 382, 511
BspACI CCGC 2 cut(s) 10, 155
BspANI GGCC 2 cut(s) 15, 193
BspLI GGNNCC 4 cut(s) 14, 15, 31, 293
BspMI ACCTGC 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 29, 291
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 273, 486
BsrFI RCCGGY 3 cut(s) 26, 189, 193
BsrGI TGTACA 1 cut(s) 664
BssAI RCCGGY 3 cut(s) 26, 189, 193
BssMI GATC 2 cut(s) 382, 511
BssNI GRCGYC 2 cut(s) 30, 626
Bst4CI ACNGT 2 cut(s) 149, 541
BstACI GRCGYC 2 cut(s) 30, 626
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 492, 638
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 703
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 385, 514
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 382, 511
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 85, 381
BstV2I GAAGAC 2 cut(s) 54, 626
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 2 cut(s) 15, 193
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 703
BveI ACCTGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 3 cut(s) 26, 189, 193
Cfr13I GGNCC 6 cut(s) 13, 14, 89, 337, 586, 757
CseI GACGC 2 cut(s) 79, 634
Csp6I GTAC 3 cut(s) 80, 292, 665
CviAII CATG 1 cut(s) 288
CviJI RGCY 7 cut(s) 15, 56, 76, 193, 233, 306, 410
CviKI_1 RGCY 7 cut(s) 15, 56, 76, 193, 233, 306, 410
CviQI GTAC 3 cut(s) 80, 292, 665
DdeI CTNAG 2 cut(s) 492, 638
DinI GGCGCC 1 cut(s) 31
DpnI GATC 2 cut(s) 384, 513
DpnII GATC 2 cut(s) 382, 511
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 191
EagI CGGCCG 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 191
Eco105I TACGTA 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 17, 235
Eco47I GGWCC 4 cut(s) 89, 337, 586, 757
Eco52I CGGCCG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 13, 757
EcoO65I GGTNACC 1 cut(s) 196
EcoT38I GRGCYC 2 cut(s) 17, 235
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 291
FaqI GGGAC 1 cut(s) 619
FatI CATG 1 cut(s) 287
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 74, 155, 370
FokI GGATG 1 cut(s) 710
FriOI GRGCYC 2 cut(s) 17, 235
Fsp4HI GCNGC 3 cut(s) 74, 155, 370
FspBI CTAG 5 cut(s) 77, 386, 518, 579, 609
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 74, 155, 370
GsaI CCCAGC 2 cut(s) 56, 232
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 15, 193
HapII CCGG 3 cut(s) 27, 190, 194
HgaI GACGC 2 cut(s) 79, 634
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 30, 626
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 2 cut(s) 377, 530
HpaII CCGG 3 cut(s) 27, 190, 194
HphI GGTGA 2 cut(s) 208, 391
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 5 cut(s) 67, 382, 511, 535, 645
Hpy8I GTNNAC 1 cut(s) 733
Hpy99I CGWCG 3 cut(s) 38, 182, 628
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 2 cut(s) 149, 541
HpyCH4IV ACGT 3 cut(s) 62, 117, 177
HpyCH4V TGCA 3 cut(s) 23, 569, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 492, 638
HpySE526I ACGT 3 cut(s) 62, 117, 177
Hsp92I GRCGYC 2 cut(s) 30, 626
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
KpnI GGTACC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 382, 511
LmnI GCTCC 2 cut(s) 7, 61
Lsp1109I GCAGC 2 cut(s) 85, 381
LweI GCATC 1 cut(s) 606
MaeI CTAG 5 cut(s) 77, 386, 518, 579, 609
MaeII ACGT 3 cut(s) 62, 117, 177
MaeIII GTNAC 3 cut(s) 196, 653, 773
MalI GATC 2 cut(s) 384, 513
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 382, 511
MboII GAAGA 6 cut(s) 59, 217, 351, 614, 628, 631
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 17, 235
MluCI AATT 4 cut(s) 355, 500, 722, 769
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 272, 305, 446, 577
MseI TTAA 2 cut(s) 414, 687
MslI CAYNNNNRTG 1 cut(s) 787
MspI CCGG 3 cut(s) 27, 190, 194
Mva1269I GAATGC 1 cut(s) 722
MwoI GCNNNNNNNGC 1 cut(s) 29
NarI GGCGCC 1 cut(s) 30
NdeII GATC 2 cut(s) 382, 511
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 4 cut(s) 14, 15, 31, 293
NmuCI GTSAC 3 cut(s) 196, 653, 773
PaqCI CACCTGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 114
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 3 cut(s) 75, 156, 371
PleI GAGTC 1 cut(s) 538
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 196
PspFI CCCAGC 2 cut(s) 52, 228
PspN4I GGNNCC 4 cut(s) 14, 15, 31, 293
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 6 cut(s) 13, 14, 89, 337, 586, 757
PspPPI RGGWCCY 1 cut(s) 757
PsrI GAACNNNNNNTAC 2 cut(s) 534, 566
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 3 cut(s) 81, 293, 666
RsaNI GTAC 3 cut(s) 80, 292, 665
RseI CAYNNNNRTG 1 cut(s) 787
SaqAI TTAA 2 cut(s) 414, 687
SatI GCNGC 3 cut(s) 74, 155, 370
Sau3AI GATC 2 cut(s) 382, 511
Sau96I GGNCC 6 cut(s) 13, 14, 89, 337, 586, 757
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 2 cut(s) 17, 235
SfaNI GCATC 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 31
SinI GGWCC 4 cut(s) 89, 337, 586, 757
SmiMI CAYNNNNRTG 1 cut(s) 787
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SnaBI TACGTA 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 4 cut(s) 355, 500, 722, 769
SsiI CCGC 2 cut(s) 10, 155
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 5 cut(s) 77, 386, 518, 579, 609
TaaI ACNGT 2 cut(s) 149, 541
TaiI ACGT 3 cut(s) 65, 120, 180
TaqI TCGA 3 cut(s) 180, 600, 714
TasI AATT 4 cut(s) 355, 500, 722, 769
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 414, 687
Tru9I TTAA 2 cut(s) 414, 687
TseFI GTSAC 3 cut(s) 196, 653, 773
TseI GCWGC 2 cut(s) 73, 369
Tsp45I GTSAC 3 cut(s) 196, 653, 773
TspGWI ACGGA 1 cut(s) 573
VpaK11BI GGWCC 4 cut(s) 89, 337, 586, 757
XapI RAATTY 3 cut(s) 355, 500, 722
XspI CTAG 5 cut(s) 77, 386, 518, 579, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.