MD15G1326600.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016241
Physical Location & Seq
Forward (+)
35047626 .. 35048426
801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1326600.v1.1.491

Sequence Viewer

Length: 801 bp
ATGGAGGAGCGGGGCTCACCTGCCGCGGCAGCAGGCGACGATGATGGAAACGAGGACCCTCCCCAGTCAGAGATGCAGTTAGTACTCCGCCCACCATCACCTCCCTTCCCCAGAGCAGGAACCTACGTAGTCCAAATCCCCAAAGACCAGATCTACCGCGTGCCACCCCCTGAAAATGCCTTAATTGTTGAACGTCACCGGAACCCCGAAAACAAGAAGAAGTCCCCATGCTGCACCATTCGTTGCTTGATTATAGGAGCAATTGTGATTTCTCTGTGCCTCATACTTTCCATAACACTGCTTTCATTGTCCCTCACTGTGAAACCTAAAGAGCCTAAATTTTCAATTACGAACGTGTACGTGAAGAACCCGAAATCAAAATCCTATACCGGCAAGAATTCACATCCAAGCTATGAAGTTTCCTTGAAAGTGAATAATCCAAATGGACATGGCATAAACTACGAAGGTAGTGAAGGGGCTTCCGTTTTATTCAAGGAAAAAAGCATTGGCAAAGGAAAATTTTCATTAAAGAAACAAGAAAAAGATAGTTCTGCCAATGTAAAGCTTGTTCTCGACGGATCCAAAGGAGCTTTGCCTCGTGAGGTTGAGAAGAGTATGGAAAATACTGATTCGAAGGTGCATCTGCCTTTAACTTTGAAAATGGACCTTTCGGTGAAGGTGAAAGGATTCATCAAGACATGGAAATTAGAGACAGAAGTTGAATGCCAATTCAAGGTGAGTACATTGGGGAAGGGTACAAAGGTCCTACAGCAAAAATGTGAAGCTAAATTTAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.26

Weight (kDa)

9.38

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 2 cut(s) 26, 159
AciI CCGC 5 cut(s) 10, 24, 26, 88, 157
AclWI GGATC 2 cut(s) 573, 586
AcsI RAATTY 4 cut(s) 338, 397, 518, 788
AfaI GTAC 4 cut(s) 84, 359, 742, 757
AfiI CCNNNNNNNGG 2 cut(s) 116, 733
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 7 cut(s) 191, 345, 427, 493, 658, 722, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 4 cut(s) 411, 565, 590, 785
AluI AGCT 4 cut(s) 411, 565, 590, 785
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 2 cut(s) 573, 586
ApeKI GCWGC 2 cut(s) 29, 231
ApoI RAATTY 4 cut(s) 338, 397, 518, 788
Asp700I GAANNNNTTC 2 cut(s) 520, 686
AspS9I GGNCC 3 cut(s) 55, 664, 763
AsuHPI GGTGA 6 cut(s) 9, 90, 188, 685, 691, 748
AsuII TTCGAA 1 cut(s) 632
AvaII GGWCC 3 cut(s) 55, 664, 763
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BamHI GGATCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 17
BauI CACGAG 1 cut(s) 597
BbvI GCAGC 2 cut(s) 41, 218
BccI CCATC 2 cut(s) 38, 103
BcoDI GTCTC 1 cut(s) 704
BfmI CTRYAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 150
BisI GCNGC 4 cut(s) 24, 27, 30, 232
BlsI GCNGC 4 cut(s) 25, 28, 31, 233
BmcAI AGTACT 1 cut(s) 84
Bme18I GGWCC 3 cut(s) 55, 664, 763
BmgT120I GGNCC 3 cut(s) 55, 664, 763
BmiI GGNNCC 4 cut(s) 57, 121, 203, 580
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 63, 649
BmuI ACTGGG 1 cut(s) 58
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 632
BsaAI YACGTR 2 cut(s) 127, 361
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 733
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 2 cut(s) 116, 733
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 41, 218
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 26, 159
BsiSI CCGG 2 cut(s) 199, 390
BslFI GGGAC 2 cut(s) 208, 295
BslI CCNNNNNNNGG 2 cut(s) 116, 733
BsmAI GTCTC 1 cut(s) 704
BsmFI GGGAC 2 cut(s) 208, 295
BsmI GAATGC 1 cut(s) 728
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 150, 578
BspACI CCGC 5 cut(s) 10, 24, 26, 88, 157
BspFNI CGCG 2 cut(s) 26, 159
BspLI GGNNCC 4 cut(s) 57, 121, 203, 580
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 573, 586
BspT104I TTCGAA 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 150, 578
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 605
BstBAI YACGTR 2 cut(s) 127, 361
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 34, 161
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 26, 159
BstKTI GATC 2 cut(s) 153, 581
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 2 cut(s) 150, 578
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 767
BstSNI TACGTA 1 cut(s) 127
BstUI CGCG 2 cut(s) 26, 159
BstV1I GCAGC 2 cut(s) 41, 218
BstX2I RGATCY 2 cut(s) 150, 578
BstYI RGATCY 2 cut(s) 150, 578
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 296, 315
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 34, 161
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 3 cut(s) 55, 664, 763
Cfr42I CCGCGG 1 cut(s) 27
Csp6I GTAC 4 cut(s) 83, 358, 741, 756
CviAII CATG 3 cut(s) 228, 449, 699
CviJI RGCY 8 cut(s) 15, 334, 411, 479, 565, 590, 785, 798
CviKI_1 RGCY 8 cut(s) 15, 334, 411, 479, 565, 590, 785, 798
CviQI GTAC 4 cut(s) 83, 358, 741, 756
DpnI GATC 2 cut(s) 152, 580
DpnII GATC 2 cut(s) 150, 578
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
EciI GGCGGA 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 3 cut(s) 55, 664, 763
EcoO109I RGGNCCY 2 cut(s) 55, 763
EcoRI GAATTC 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 3 cut(s) 231, 452, 702
FaqI GGGAC 2 cut(s) 208, 295
FatI CATG 3 cut(s) 227, 448, 698
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 24, 27, 30, 232
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 24, 27, 30, 232
GluI GCNGC 4 cut(s) 24, 27, 30, 232
HapII CCGG 2 cut(s) 199, 390
Hin1II CATG 3 cut(s) 231, 452, 702
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 629, 687
HpaII CCGG 2 cut(s) 199, 390
HphI GGTGA 6 cut(s) 9, 90, 188, 685, 691, 748
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 572, 599, 694
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 41, 578
HpyAV CCTTC 6 cut(s) 115, 458, 467, 628, 670, 745
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 4 cut(s) 126, 193, 354, 360
HpyCH4V TGCA 3 cut(s) 76, 234, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpySE526I ACGT 4 cut(s) 126, 193, 354, 360
Hsp92II CATG 3 cut(s) 231, 452, 702
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 2 cut(s) 150, 578
LmnI GCTCC 3 cut(s) 7, 257, 587
LpnPI CCDG 9 cut(s) 18, 33, 77, 102, 124, 161, 183, 212, 403
Lsp1109I GCAGC 2 cut(s) 41, 218
LweI GCATC 2 cut(s) 63, 649
MaeII ACGT 4 cut(s) 126, 193, 354, 360
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 152, 580
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 150, 578
MboII GAAGA 3 cut(s) 229, 376, 622
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 2 cut(s) 150, 578
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 9 cut(s) 183, 261, 338, 345, 397, 518, 704, 728, 788
MnlI CCTC 7 cut(s) 46, 69, 111, 290, 323, 595, 606
MroXI GAANNNNTTC 2 cut(s) 520, 686
MseI TTAA 4 cut(s) 182, 527, 650, 792
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 199, 390
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 728
MvnI CGCG 2 cut(s) 26, 159
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 150, 578
NlaIII CATG 3 cut(s) 231, 452, 702
NlaIV GGNNCC 4 cut(s) 57, 121, 203, 580
NmuCI GTSAC 1 cut(s) 194
NspV TTCGAA 1 cut(s) 632
PaqCI CACCTGC 1 cut(s) 28
PctI GAATGC 1 cut(s) 728
PdmI GAANNNNTTC 2 cut(s) 520, 686
PfeI GAWTC 2 cut(s) 629, 687
PkrI GCNGC 4 cut(s) 25, 28, 31, 233
Ppu21I YACGTR 2 cut(s) 127, 361
PpuMI RGGWCCY 2 cut(s) 55, 763
Psp5II RGGWCCY 2 cut(s) 55, 763
PspN4I GGNNCC 4 cut(s) 57, 121, 203, 580
PspPI GGNCC 3 cut(s) 55, 664, 763
PspPPI RGGWCCY 2 cut(s) 55, 763
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PsuI RGATCY 2 cut(s) 150, 578
RsaI GTAC 4 cut(s) 84, 359, 742, 757
RsaNI GTAC 4 cut(s) 83, 358, 741, 756
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 4 cut(s) 182, 527, 650, 792
SatI GCNGC 4 cut(s) 24, 27, 30, 232
Sau3AI GATC 2 cut(s) 150, 578
Sau96I GGNCC 3 cut(s) 55, 664, 763
ScaI AGTACT 1 cut(s) 84
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 2 cut(s) 63, 649
SfcI CTRYAG 1 cut(s) 767
Sfr303I CCGCGG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 3 cut(s) 55, 664, 763
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 9 cut(s) 183, 261, 338, 345, 397, 518, 704, 728, 788
SsiI CCGC 5 cut(s) 10, 24, 26, 88, 157
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 4 cut(s) 129, 196, 357, 363
TaqI TCGA 2 cut(s) 573, 632
TasI AATT 9 cut(s) 183, 261, 338, 345, 397, 518, 704, 728, 788
TatI WGTACW 2 cut(s) 82, 740
TauI GCSGC 2 cut(s) 26, 29
TfiI GAWTC 2 cut(s) 629, 687
Tru1I TTAA 4 cut(s) 182, 527, 650, 792
Tru9I TTAA 4 cut(s) 182, 527, 650, 792
TscAI CASTG 2 cut(s) 303, 322
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 29, 231
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 294, 429, 513, 679
TspGWI ACGGA 2 cut(s) 472, 591
TspRI CASTG 2 cut(s) 303, 322
VpaK11BI GGWCC 3 cut(s) 55, 664, 763
XapI RAATTY 4 cut(s) 338, 397, 518, 788
XmnI GAANNNNTTC 2 cut(s) 520, 686
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.