Rh2DG258900

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016241
Physical Location & Seq
Forward (+)
27691759 .. 27692770
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG258900.1

Sequence Viewer

Length: 777 bp
ATGGAGGAGCGGGGTCCACCTGCAACCGGTGCCGACGACATCAATGAAGACCCAGCTCCAACGTCAGAGACGCAGCTAGTACCCTATGGTCCCATCCCCTCACCCAACGAAACATACGTAATCCATTTCCCTAAAGACCAAATCTACCGCGTGCCGCCCCCTGAAAATGCCATACTCGTCGATAAGCACCGGCCGGTGACGAAGAAGAAATCACGCAAGTCTTGTTGCTGGGCTCTCCTTGTCGTTTTGCTTGTCCTGTTCCTCATATTCGGCATAGCCTTGCTGACATGGTACCTCGTTTTGAGCCATAAAGACCCTACATTCTCTATCAGTCAGGTCCAAGTGAAGCAATCGAATTCTTCAGACAGAAGCAAGGATTCAGATCTAGGATATGACATCACCTTGAAAGCTGTTAATCCTAATGATAAGATGAGCATACGCTTCGAAAATGGTGGTGGAACTTCCCTTTTATATAGGCAAAAGGACATTGCTAAGGGCAAATTTCCATCTGATCAACTAGATGATGATGAGTCGGACACCGTAAAACTTGTTCTAAACGGAACAAGCGCAGAGTTGCCTAGCGAGGTCCAGGAAAGCATCGAAGAAACTAGTTCGAAGAAGACGACGCCGTTGTCCCTAAGTCTGAAAATAAGTGACCTTCCTGTACATATCAAATATGGGTTTTTTAAGAGTTGGGATGAGAAAGCGGTAGTTGAATGCAAATTCAAGGTGGACACATTGGGGTCGGGTACAAAGTTCTGTAATCTTTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

258

Amino Acids

28.74

Weight (kDa)

5.66

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 2 cut(s) 29, 291
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 10, 148, 155, 707
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 3 cut(s) 355, 500, 722
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 4 cut(s) 81, 293, 666, 751
AfiI CCNNNNNNNGG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 3 cut(s) 406, 716, 727
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 3 cut(s) 56, 76, 410
AluI AGCT 3 cut(s) 56, 76, 410
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 3 cut(s) 355, 500, 722
AsiGI ACCGGT 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 4 cut(s) 14, 89, 337, 586
AsuHPI GGTGA 3 cut(s) 93, 208, 391
AsuII TTCGAA 2 cut(s) 444, 614
AvaII GGWCC 4 cut(s) 14, 89, 337, 586
BanI GGYRCC 2 cut(s) 29, 291
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 54, 626
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 101, 514
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 1 cut(s) 590
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 5 cut(s) 77, 386, 518, 579, 609
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 74, 155
BlsI GCNGC 2 cut(s) 75, 156
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 4 cut(s) 14, 89, 337, 586
BmgT120I GGNCC 4 cut(s) 14, 89, 337, 586
BmiI GGNNCC 4 cut(s) 15, 31, 91, 293
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 54, 626
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 2 cut(s) 444, 614
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 626
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 3 cut(s) 26, 189, 193
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 590
BseGI GGATG 2 cut(s) 93, 703
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 20
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 2 cut(s) 52, 228
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 2 cut(s) 29, 291
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 27, 190, 194
BslFI GGGAC 2 cut(s) 75, 619
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 75, 619
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 1 cut(s) 193
Bsp119I TTCGAA 2 cut(s) 444, 614
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 2 cut(s) 382, 511
BspACI CCGC 4 cut(s) 10, 148, 155, 707
BspANI GGCC 1 cut(s) 193
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 4 cut(s) 15, 31, 91, 293
BspMI ACCTGC 1 cut(s) 28
BspT104I TTCGAA 2 cut(s) 444, 614
BspT107I GGYRCC 2 cut(s) 29, 291
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 3 cut(s) 26, 189, 193
BsrGI TGTACA 1 cut(s) 664
BssAI RCCGGY 3 cut(s) 26, 189, 193
BssMI GATC 2 cut(s) 382, 511
BssNI GRCGYC 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 2 cut(s) 444, 614
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 492, 638
BstF5I GGATG 2 cut(s) 93, 703
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 2 cut(s) 385, 514
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 382, 511
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 588
BstSNI TACGTA 1 cut(s) 118
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 2 cut(s) 54, 626
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 93, 703
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 569
Cfr10I RCCGGY 3 cut(s) 26, 189, 193
Cfr13I GGNCC 4 cut(s) 14, 89, 337, 586
CseI GACGC 2 cut(s) 79, 634
Csp6I GTAC 4 cut(s) 80, 292, 665, 750
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 1 cut(s) 288
CviJI RGCY 7 cut(s) 56, 76, 193, 233, 278, 306, 410
CviKI_1 RGCY 7 cut(s) 56, 76, 193, 233, 278, 306, 410
CviQI GTAC 4 cut(s) 80, 292, 665, 750
DdeI CTNAG 2 cut(s) 492, 638
DpnI GATC 2 cut(s) 384, 513
DpnII GATC 2 cut(s) 382, 511
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 191
EagI CGGCCG 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 191
Eco105I TACGTA 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 4 cut(s) 14, 89, 337, 586
Eco52I CGGCCG 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 291
FaqI GGGAC 2 cut(s) 75, 619
FatI CATG 1 cut(s) 287
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 74, 155
FokI GGATG 2 cut(s) 80, 710
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 74, 155
FspBI CTAG 5 cut(s) 77, 386, 518, 579, 609
GlaI GCGC 1 cut(s) 568
GluI GCNGC 2 cut(s) 74, 155
GsaI CCCAGC 2 cut(s) 56, 232
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 27, 190, 194
HgaI GACGC 2 cut(s) 79, 634
HhaI GCGC 1 cut(s) 569
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HinfI GANTC 2 cut(s) 377, 530
HpaII CCGG 3 cut(s) 27, 190, 194
HphI GGTGA 3 cut(s) 93, 208, 391
Hpy166II GTNNAC 2 cut(s) 17, 733
Hpy188I TCNGA 6 cut(s) 67, 364, 382, 511, 535, 645
Hpy8I GTNNAC 2 cut(s) 17, 733
Hpy99I CGWCG 3 cut(s) 38, 182, 628
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 2 cut(s) 62, 117
HpyCH4V TGCA 2 cut(s) 23, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 492, 638
HpySE526I ACGT 2 cut(s) 62, 117
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 567
KpnI GGTACC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 382, 511
LmnI GCTCC 2 cut(s) 7, 61
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 606
MaeI CTAG 5 cut(s) 77, 386, 518, 579, 609
MaeII ACGT 2 cut(s) 62, 117
MaeIII GTNAC 2 cut(s) 196, 653
MalI GATC 2 cut(s) 384, 513
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 382, 511
MboII GAAGA 7 cut(s) 59, 214, 217, 351, 614, 628, 631
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 3 cut(s) 355, 500, 722
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 2 cut(s) 83, 513
MnlI CCTC 4 cut(s) 109, 272, 305, 577
MseI TTAA 2 cut(s) 414, 687
MspI CCGG 3 cut(s) 27, 190, 194
MspR9I CCNGG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 382, 511
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 4 cut(s) 15, 31, 91, 293
NmuCI GTSAC 2 cut(s) 196, 653
NspV TTCGAA 2 cut(s) 444, 614
PaqCI CACCTGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 620
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 588
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 2 cut(s) 75, 156
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 588
PspFI CCCAGC 2 cut(s) 52, 228
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 4 cut(s) 15, 31, 91, 293
PspPI GGNCC 4 cut(s) 14, 89, 337, 586
PsrI GAACNNNNNNTAC 2 cut(s) 534, 566
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 4 cut(s) 81, 293, 666, 751
RsaNI GTAC 4 cut(s) 80, 292, 665, 750
SaqAI TTAA 2 cut(s) 414, 687
SatI GCNGC 2 cut(s) 74, 155
Sau3AI GATC 2 cut(s) 382, 511
Sau96I GGNCC 4 cut(s) 14, 89, 337, 586
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 1 cut(s) 606
SfuI TTCGAA 2 cut(s) 444, 614
SinI GGWCC 4 cut(s) 14, 89, 337, 586
SnaBI TACGTA 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 3 cut(s) 355, 500, 722
SsiI CCGC 4 cut(s) 10, 148, 155, 707
SspMI CTAG 5 cut(s) 77, 386, 518, 579, 609
StyD4I CCNGG 1 cut(s) 588
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 2 cut(s) 65, 120
TaqI TCGA 5 cut(s) 180, 353, 444, 600, 614
TasI AATT 3 cut(s) 355, 500, 722
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 414, 687
Tru9I TTAA 2 cut(s) 414, 687
TseFI GTSAC 2 cut(s) 196, 653
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 196, 653
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 573
VpaK11BI GGWCC 4 cut(s) 14, 89, 337, 586
XapI RAATTY 3 cut(s) 355, 500, 722
XspI CTAG 5 cut(s) 77, 386, 518, 579, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.