MD01G1027300.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016241
Physical Location & Seq
Reverse (-)
10177554 .. 10178354
801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1027300.v1.1.491

Sequence Viewer

Length: 801 bp
ATGGAGGAGCGGGGCCCACCTGCTGCGGCAGCAGGCGACGATGATGGAAACGAGGACCCTCCCCAGTCAGAGATGCAGTTAGTACTCCGCCCACCGCCACCTCCCTTCCCCGGAGCAAACACCTACGTAGTCCAAATCCCCAAAGACCAGATCTACCGCGTGCCACCCCCTGAAAATGCCTTAATTGTTGAACGTCACCGGAACCCGGAAAACAAGAAGAAGTCCCCATGCTGCACGATTCGTTGCTTGATAATCGGAGCAATTGTGTTTTCTCTGTGCCTCATACTTTTCATAACATTGCTTTCATTATCCCTCACTGTGAAACCTAAAGAGCCTAAATTTTCAATTTCGAATGTCCACGTGAAGAACCCGAAATCAAAATCTGATACTGGCAAGAATTCACATCCAGGCTATGAGGTCTCGGTGAAGGTAAATAATCCAAATGGACATGGCATAAACTACGAAGGTAGTGAAGGGGCTTCCCTTTTGTTGAAGGAAAAAAGCATTGGCAAAGGAAAATTTCCATTAAAGAAACAAGAAAAAGATAGTTCTGCCACTGTAAAGCTTGTTCTCGACGGATCGAAAGGAGCTTTGCCTCGTGAGGTCGAGAAGAGTATAGAAAATACTAATTCGAAGATGCATCTGCCCTTAACTTTGAAAATGGACCTTTCGGTGAAGGTGAAAGGATTTATCAAGACATGGAAAATGGAGACCGAAGTTGAATGCCATTTCCAGGTGAGTACATTGGGGAAGGGTACAAAAGTCCTGCAGCAAAAATGTGAAGCTAAATTTAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.22

Weight (kDa)

9.29

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 142 - 242 4e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 1 cut(s) 159
AciI CCGC 5 cut(s) 10, 26, 88, 95, 157
AclWI GGATC 1 cut(s) 586
AcsI RAATTY 4 cut(s) 338, 397, 518, 788
AcvI CACGTG 1 cut(s) 361
AfaI GTAC 3 cut(s) 84, 742, 757
AfiI CCNNNNNNNGG 3 cut(s) 110, 205, 733
AgsI TTSAA 5 cut(s) 191, 345, 493, 658, 722
AjnI CCWGG 2 cut(s) 406, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 3 cut(s) 565, 590, 785
AluI AGCT 3 cut(s) 565, 590, 785
Alw26I GTCTC 2 cut(s) 424, 704
AlwI GGATC 1 cut(s) 586
AoxI GGCC 1 cut(s) 13
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 4 cut(s) 23, 29, 231, 769
ApoI RAATTY 4 cut(s) 338, 397, 518, 788
AspS9I GGNCC 4 cut(s) 13, 14, 55, 664
AsuC2I CCSGG 2 cut(s) 111, 206
AsuHPI GGTGA 5 cut(s) 188, 436, 685, 691, 748
AsuII TTCGAA 2 cut(s) 350, 632
AvaII GGWCC 2 cut(s) 55, 664
BaeGI GKGCMC 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BanII GRGCYC 1 cut(s) 17
BauI CACGAG 1 cut(s) 597
BbrPI CACGTG 1 cut(s) 361
BbvI GCAGC 4 cut(s) 10, 41, 218, 781
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 408, 734
BcnI CCSGG 2 cut(s) 111, 206
BcoDI GTCTC 2 cut(s) 424, 704
BfmI CTRYAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 150
BisI GCNGC 5 cut(s) 24, 27, 30, 232, 770
BlsI GCNGC 5 cut(s) 25, 28, 31, 233, 771
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 4 cut(s) 111, 206, 408, 734
Bme18I GGWCC 2 cut(s) 55, 664
BmgT120I GGNCC 4 cut(s) 13, 14, 55, 664
BmiI GGNNCC 4 cut(s) 14, 15, 57, 203
BmrFI CCNGG 4 cut(s) 111, 206, 408, 734
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 63, 627, 649
BmuI ACTGGG 1 cut(s) 58
Bpu14I TTCGAA 2 cut(s) 350, 632
BpuMI CCSGG 2 cut(s) 111, 206
BsaAI YACGTR 2 cut(s) 127, 361
BsaI GGTCTC 2 cut(s) 424, 704
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 205, 733
Bse1I ACTGG 2 cut(s) 64, 394
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 408, 734
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 110, 205, 733
BseMI GCAATG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 64, 394
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 4 cut(s) 10, 41, 218, 781
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 15
BsiSI CCGG 3 cut(s) 111, 199, 206
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 110, 205, 733
BsmAI GTCTC 2 cut(s) 424, 704
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 1 cut(s) 15
Bso31I GGTCTC 2 cut(s) 424, 704
Bsp119I TTCGAA 2 cut(s) 350, 632
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 150, 578
BspACI CCGC 5 cut(s) 10, 26, 88, 95, 157
BspANI GGCC 1 cut(s) 15
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 14, 15, 57, 203
BspMAI CTGCAG 1 cut(s) 771
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 1 cut(s) 586
BspT104I TTCGAA 2 cut(s) 350, 632
BspTNI GGTCTC 2 cut(s) 424, 704
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 2 cut(s) 64, 394
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 150, 578
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 408, 734
Bst4CI ACNGT 2 cut(s) 319, 559
Bst6I CTCTTC 1 cut(s) 605
BstBAI YACGTR 2 cut(s) 127, 361
BstBI TTCGAA 2 cut(s) 350, 632
BstC8I GCNNGC 2 cut(s) 34, 161
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 153, 581
BstMAI GTCTC 2 cut(s) 424, 704
BstMBI GATC 2 cut(s) 150, 578
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 408, 734
BstSCI CCNGG 4 cut(s) 109, 204, 406, 732
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 127
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 10, 41, 218, 781
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 315, 555
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 34, 161
Cfr13I GGNCC 4 cut(s) 13, 14, 55, 664
Csp6I GTAC 3 cut(s) 83, 741, 756
CviAII CATG 3 cut(s) 228, 449, 699
CviJI RGCY 8 cut(s) 15, 334, 411, 479, 565, 590, 785, 798
CviKI_1 RGCY 8 cut(s) 15, 334, 411, 479, 565, 590, 785, 798
CviQI GTAC 3 cut(s) 83, 741, 756
DpnI GATC 2 cut(s) 152, 580
DpnII GATC 2 cut(s) 150, 578
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
EciI GGCGGA 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 2 cut(s) 424, 704
Eco47I GGWCC 2 cut(s) 55, 664
Eco72I CACGTG 1 cut(s) 361
EcoO109I RGGNCCY 2 cut(s) 13, 55
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 406, 732
EcoT22I ATGCAT 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 3 cut(s) 231, 452, 702
FaiI YATR 8 cut(s) 229, 284, 293, 414, 450, 455, 617, 700
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 227, 448, 698
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 24, 27, 30, 232, 770
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 24, 27, 30, 232, 770
GluI GCNGC 5 cut(s) 24, 27, 30, 232, 770
HaeIII GGCC 1 cut(s) 15
HapII CCGG 3 cut(s) 111, 199, 206
Hin1II CATG 3 cut(s) 231, 452, 702
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 1 cut(s) 238
HpaII CCGG 3 cut(s) 111, 199, 206
HphI GGTGA 5 cut(s) 188, 436, 685, 691, 748
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 70, 257, 385
Hpy188III TCNNGA 4 cut(s) 572, 599, 607, 694
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 41, 578
HpyAV CCTTC 7 cut(s) 115, 421, 458, 467, 487, 670, 745
HpyCH4III ACNGT 2 cut(s) 319, 559
HpyCH4IV ACGT 3 cut(s) 126, 193, 360
HpyCH4V TGCA 4 cut(s) 76, 234, 640, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpySE526I ACGT 3 cut(s) 126, 193, 360
Hsp92II CATG 3 cut(s) 231, 452, 702
Kzo9I GATC 2 cut(s) 150, 578
LmnI GCTCC 4 cut(s) 7, 113, 257, 587
Lsp1109I GCAGC 4 cut(s) 10, 41, 218, 781
LweI GCATC 3 cut(s) 63, 627, 649
MaeII ACGT 3 cut(s) 126, 193, 360
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 152, 580
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 150, 578
MboII GAAGA 4 cut(s) 229, 376, 622, 646
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 8 cut(s) 183, 261, 338, 345, 397, 518, 628, 788
MnlI CCTC 8 cut(s) 46, 69, 111, 290, 323, 409, 595, 606
Mph1103I ATGCAT 1 cut(s) 642
MseI TTAA 4 cut(s) 182, 527, 650, 792
MspI CCGG 3 cut(s) 111, 199, 206
MspR9I CCNGG 4 cut(s) 111, 206, 408, 734
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 2 cut(s) 408, 734
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 2 cut(s) 111, 206
NdeII GATC 2 cut(s) 150, 578
NlaIII CATG 3 cut(s) 231, 452, 702
NlaIV GGNNCC 4 cut(s) 14, 15, 57, 203
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 642
NspV TTCGAA 2 cut(s) 350, 632
PaqCI CACCTGC 1 cut(s) 28
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 25, 28, 31, 233, 771
PmaCI CACGTG 1 cut(s) 361
PmlI CACGTG 1 cut(s) 361
Ppu21I YACGTR 2 cut(s) 127, 361
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 406, 732
PspCI CACGTG 1 cut(s) 361
PspGI CCWGG 2 cut(s) 406, 732
PspN4I GGNNCC 4 cut(s) 14, 15, 57, 203
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 4 cut(s) 13, 14, 55, 664
PspPPI RGGWCCY 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PstI CTGCAG 1 cut(s) 771
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 3 cut(s) 84, 742, 757
RsaNI GTAC 3 cut(s) 83, 741, 756
SaqAI TTAA 4 cut(s) 182, 527, 650, 792
SatI GCNGC 5 cut(s) 24, 27, 30, 232, 770
Sau3AI GATC 2 cut(s) 150, 578
Sau96I GGNCC 4 cut(s) 13, 14, 55, 664
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 4 cut(s) 111, 206, 408, 734
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 3 cut(s) 63, 627, 649
SfcI CTRYAG 1 cut(s) 767
SfuI TTCGAA 2 cut(s) 350, 632
SinI GGWCC 2 cut(s) 55, 664
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 8 cut(s) 183, 261, 338, 345, 397, 518, 628, 788
SsiI CCGC 5 cut(s) 10, 26, 88, 95, 157
StyD4I CCNGG 4 cut(s) 109, 204, 406, 732
TaaI ACNGT 2 cut(s) 319, 559
TaiI ACGT 3 cut(s) 129, 196, 363
TaqI TCGA 5 cut(s) 350, 573, 581, 606, 632
TaqII GACCGA 1 cut(s) 728
TasI AATT 8 cut(s) 183, 261, 338, 345, 397, 518, 628, 788
TatI WGTACW 2 cut(s) 82, 740
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 4 cut(s) 182, 527, 650, 792
Tru9I TTAA 4 cut(s) 182, 527, 650, 792
TscAI CASTG 2 cut(s) 322, 562
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 4 cut(s) 23, 29, 231, 769
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 280, 294
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 2 cut(s) 322, 562
VpaK11BI GGWCC 2 cut(s) 55, 664
XapI RAATTY 4 cut(s) 338, 397, 518, 788
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.