Rorug02G0192200

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016241
Physical Location & Seq
Forward (+)
17942284 .. 17943669
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0192200.1

Sequence Viewer

Length: 705 bp
ATGCAACATGAGGATACATTGATGATAAAGACATATAATGGAACACATAACTGTGCAAGGGTTCTTGACAACAGTATGGTGAAGACTCCATATTTGACAAGGAAATTTGCTGAGCAGATCAAGCTGAACCCTAGCATTTCAACAGAGTGTCTGCAACAGACCATGGCAGCTGGGGTCAGAGCCAGGGTTTCATTCCAACAAGCTTATAGGACAAAGAAGGCAGCTTTGAGCCTACTGGAGAAGTCCATTAAGGAGCAATATGCTAGGGTTCAGGATTATGCAAAGGAGCTGAAAAGGGTTGATCCTGAGACAAGTGTTGATATTAAGTGTGATTTCTCTAATCCTAATCCTAGAAGAAACCCTAAGCACTGGTGTAGAGCTCACTTTGGCAACATTCTGAAGTGTGATGTGCTTCTGAACAACCTATGTGAAAGTTTTAATGCTTTCATCCTGCCTGCTAGATCCAAGCCAGTAATTTCTTGCTTTGAAGACATCAGGGTTAAGATGATGAAGAGGATTGCAATGAGGAGAGAGAAGATGAGTAAAGTTTTAGACCCAATCTGCCCTAGGCCTAGGGAAATTTTGGAGAAGAACAAGACTAGGTCTGCCACAGATTGCATACCATATGGGTCTGGCAGCCACCAAATTGAGGTGTGGCAGCAGGAGAAAAAACTATTATTACTGCTTACGATCATCCTGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

234

Amino Acids

27.06

Weight (kDa)

9.59

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 296, 456
AcsI RAATTY 2 cut(s) 104, 579
AcuI CTGAAG 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 2 cut(s) 141, 488
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 6 cut(s) 124, 170, 203, 224, 289, 380
AluI AGCT 6 cut(s) 124, 170, 203, 224, 289, 380
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 296, 456
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 4 cut(s) 167, 221, 636, 658
ApoI RAATTY 2 cut(s) 104, 579
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AspA2I CCTAGG 2 cut(s) 566, 572
AsuHPI GGTGA 1 cut(s) 91
AvrII CCTAGG 2 cut(s) 566, 572
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 89, 495
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 4 cut(s) 179, 233, 648, 670
BciT130I CCWGG 1 cut(s) 184
BciVI GTATCC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 7 cut(s) 132, 264, 351, 459, 567, 573, 600
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 4 cut(s) 168, 222, 637, 659
BlnI CCTAGG 2 cut(s) 566, 572
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 4 cut(s) 169, 223, 638, 660
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 89, 495
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 111
BsaJI CCNNGG 4 cut(s) 162, 183, 566, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 3 cut(s) 240, 374, 470
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 4 cut(s) 162, 183, 566, 572
BseGI GGATG 2 cut(s) 447, 693
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 102, 297
BseNI ACTGG 3 cut(s) 240, 374, 470
BseRI GAGGAG 1 cut(s) 541
BseXI GCAGC 4 cut(s) 179, 233, 648, 670
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 4 cut(s) 117, 301, 461, 690
Bsp1720I GCTNAGC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 2 cut(s) 103, 298
BspPI GGATC 2 cut(s) 296, 456
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 3 cut(s) 240, 374, 470
BssECI CCNNGG 4 cut(s) 162, 183, 566, 572
BssMI GATC 4 cut(s) 117, 301, 461, 690
BssT1I CCWWGG 3 cut(s) 162, 566, 572
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 53, 74
Bst6I CTCTTC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 111, 306, 363
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 447, 693
BstKTI GATC 4 cut(s) 120, 304, 464, 693
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 4 cut(s) 117, 301, 461, 690
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 4 cut(s) 179, 233, 648, 670
BstV2I GAAGAC 2 cut(s) 89, 495
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 571
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 447, 693
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 456
CviAII CATG 2 cut(s) 8, 163
DdeI CTNAG 3 cut(s) 111, 306, 363
DpnI GATC 4 cut(s) 119, 303, 463, 692
DpnII GATC 4 cut(s) 117, 301, 461, 690
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 162, 566, 572
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 3 cut(s) 162, 566, 572
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 3 cut(s) 162, 566, 572
FaeI CATG 2 cut(s) 11, 166
FatI CATG 2 cut(s) 7, 162
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 168, 222, 637, 659
FokI GGATG 2 cut(s) 434, 680
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 4 cut(s) 168, 222, 637, 659
FspBI CTAG 7 cut(s) 132, 264, 351, 459, 567, 573, 600
GluI GCNGC 4 cut(s) 168, 222, 637, 659
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 571
Hin1II CATG 2 cut(s) 11, 166
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 1 cut(s) 85
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 179, 399, 417
Hpy188III TCNNGA 4 cut(s) 65, 272, 305, 697
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 53, 74
HpyCH4IV ACGT 1 cut(s) 701
HpyCH4V TGCA 6 cut(s) 4, 56, 154, 281, 521, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 111, 306, 363
HpySE526I ACGT 1 cut(s) 701
Hsp92II CATG 2 cut(s) 11, 166
Kzo9I GATC 4 cut(s) 117, 301, 461, 690
LmnI GCTCC 2 cut(s) 253, 286
Lsp1109I GCAGC 4 cut(s) 179, 233, 648, 670
MaeI CTAG 7 cut(s) 132, 264, 351, 459, 567, 573, 600
MaeII ACGT 1 cut(s) 701
MalI GATC 4 cut(s) 119, 303, 463, 692
MboI GATC 4 cut(s) 117, 301, 461, 690
MboII GAAGA 6 cut(s) 94, 366, 500, 523, 547, 601
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 4 cut(s) 104, 474, 579, 645
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 4 cut(s) 4, 507, 519, 643
MseI TTAA 4 cut(s) 249, 324, 438, 501
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 625
NdeII GATC 4 cut(s) 117, 301, 461, 690
NlaIII CATG 2 cut(s) 11, 166
PceI AGGCCT 1 cut(s) 571
PflFI GACNNNGTC 1 cut(s) 601
PkrI GCNGC 4 cut(s) 169, 223, 638, 660
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 461
PsyI GACNNNGTC 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 4 cut(s) 249, 324, 438, 501
SatI GCNGC 4 cut(s) 168, 222, 637, 659
Sau3AI GATC 4 cut(s) 117, 301, 461, 690
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 4 cut(s) 104, 474, 579, 645
SseBI AGGCCT 1 cut(s) 571
SspMI CTAG 7 cut(s) 132, 264, 351, 459, 567, 573, 600
SstI GAGCTC 1 cut(s) 382
StuI AGGCCT 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 3 cut(s) 162, 566, 572
TaaI ACNGT 2 cut(s) 53, 74
TaiI ACGT 1 cut(s) 704
TasI AATT 4 cut(s) 104, 474, 579, 645
Tru1I TTAA 4 cut(s) 249, 324, 438, 501
Tru9I TTAA 4 cut(s) 249, 324, 438, 501
TscAI CASTG 1 cut(s) 374
TseI GCWGC 4 cut(s) 167, 221, 636, 658
TspDTI ATGAA 3 cut(s) 180, 436, 524
TspRI CASTG 1 cut(s) 374
Tth111I GACNNNGTC 1 cut(s) 601
XapI RAATTY 2 cut(s) 104, 579
XmaJI CCTAGG 2 cut(s) 566, 572
XspI CTAG 7 cut(s) 132, 264, 351, 459, 567, 573, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.