Prupe.6G182500_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016241
Physical Location & Seq
Reverse (-)
18940520 .. 18941424
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G182500.1

Sequence Viewer

Length: 804 bp
ATGGAGGAGCGGGGCCAACCTGCCGCAGCAGCGGACGATGATGCCAACGAAGACCCACCCTTGTCAGAGCCACAGACACAGATAGTACCTCTCGCTCCACCTCCCTTCCCCGGAGCAGCAACCTACGTAATCCAAATCCCTAAAGACCAAATCTACCGTGTGCCACCCCCTGAAAATGCCCTAATTGTTGAGCGTCACCGCAAACCCGAAAAACAGAAGCAGAAGTCCCTATGCTGCGGGGCTCGTTGCTTGGTTATTGGAGCTATTTTGTTTTTCATATGCCTTGTAATTGGCATAACATTGCTTGCATTGTCCCTCACTAAGAAACCTAAAGAGCCTACTTTTTCAATTACGCATGTCCACGTGAAGAACCCCAAATCAAAATCATCTTCTGGCAAGAATTCCCATCCAGGATATGAGGTGTCCATGAAAGTGAAAAATCCAAATGAACATGGCATAGATTATGCAAATAGTGGAGGGGCTTCTCTTATATACAAGGAAAAAACCCTTGGCAAAGGAAAATTTCCATTAAAGAACCAAGGAGGAGATGACTCCACCGCCGTAAAGCTTGTTCTCGACGGATCCAAGGGGCCGCTGCCTCGGGACGTGAAGAAGAGCATGGAAGATACTGATTCAGAGGTGCGTGTGTCTTTGGCTTTGAAAATGGACCTTTCGGTGAAGGTGAAAGGGTTTATCAAGACATGGAATATGGACACCGAAGTTGAATGCCATTTCAAGGTGAGTACATTGGGGAAGGGCACGAGGGTTCTGGACCAAAAATGTGAAGCTGAATTCAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

268

Amino Acids

29.13

Weight (kDa)

8.97

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 7 cut(s) 10, 24, 32, 199, 237, 558, 593
AclWI GGATC 2 cut(s) 576, 589
AcsI RAATTY 3 cut(s) 400, 521, 791
AcvI CACGTG 1 cut(s) 364
AfaI GTAC 2 cut(s) 87, 745
AfiI CCNNNNNNNGG 2 cut(s) 110, 736
AgsI TTSAA 5 cut(s) 348, 661, 725, 736, 796
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 3 cut(s) 263, 568, 788
AluI AGCT 3 cut(s) 263, 568, 788
AlwI GGATC 2 cut(s) 576, 589
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 2 cut(s) 13, 590
ApeKI GCWGC 5 cut(s) 26, 29, 116, 234, 595
ApoI RAATTY 3 cut(s) 400, 521, 791
AspS9I GGNCC 4 cut(s) 13, 590, 667, 772
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 4 cut(s) 188, 688, 694, 751
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 2 cut(s) 667, 772
BaeGI GKGCMC 1 cut(s) 761
BamHI GGATCC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 244
BauI CACGAG 1 cut(s) 760
BbrPI CACGTG 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 5 cut(s) 38, 41, 128, 221, 582
BccI CCATC 1 cut(s) 414
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 411
BcnI CCSGG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 7 cut(s) 24, 27, 30, 117, 235, 593, 596
BlsI GCNGC 7 cut(s) 25, 28, 31, 118, 236, 594, 597
Bme1390I CCNGG 2 cut(s) 111, 411
Bme18I GGWCC 2 cut(s) 667, 772
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 4 cut(s) 13, 590, 667, 772
BmiI GGNNCC 3 cut(s) 14, 583, 591
BmrFI CCNGG 2 cut(s) 111, 411
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 2 cut(s) 127, 364
BsaJI CCNNGG 5 cut(s) 109, 508, 538, 585, 599
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 736
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 5 cut(s) 109, 508, 538, 585, 599
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 110, 736
BseMI GCAATG 1 cut(s) 299
BseRI GAGGAG 2 cut(s) 20, 558
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 5 cut(s) 38, 41, 128, 221, 582
BshFI GGCC 2 cut(s) 15, 592
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 3 cut(s) 211, 298, 617
BslI CCNNNNNNNGG 2 cut(s) 110, 736
BsmFI GGGAC 3 cut(s) 211, 298, 617
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 15, 592
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 2 cut(s) 244, 761
Bsp143I GATC 1 cut(s) 581
BspACI CCGC 7 cut(s) 10, 24, 32, 199, 237, 558, 593
BspANI GGCC 2 cut(s) 15, 592
BspLI GGNNCC 3 cut(s) 14, 583, 591
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 576, 589
BspQI GCTCTTC 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 5 cut(s) 109, 508, 538, 585, 599
BssMI GATC 1 cut(s) 581
BssSI CACGAG 1 cut(s) 760
BssT1I CCWWGG 3 cut(s) 508, 538, 585
Bst2BI CACGAG 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 608
BstBAI YACGTR 2 cut(s) 127, 364
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 1 cut(s) 584
BstMBI GATC 1 cut(s) 581
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 109, 409
BstSLI GKGCMC 1 cut(s) 761
BstSNI TACGTA 1 cut(s) 127
BstV1I GCAGC 5 cut(s) 38, 41, 128, 221, 582
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 2 cut(s) 15, 592
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 13, 590, 667, 772
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 86, 744
CviAII CATG 5 cut(s) 356, 427, 452, 619, 702
CviQI GTAC 2 cut(s) 86, 744
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 583
DpnII GATC 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
Eco105I TACGTA 1 cut(s) 127
Eco130I CCWWGG 3 cut(s) 508, 538, 585
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 667, 772
Eco72I CACGTG 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 600
EcoRI GAATTC 2 cut(s) 400, 791
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 508, 538, 585
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 3 cut(s) 508, 538, 585
FaeI CATG 5 cut(s) 359, 430, 455, 622, 705
FaqI GGGAC 3 cut(s) 211, 298, 617
FatI CATG 5 cut(s) 355, 426, 451, 618, 701
FauI CCCGC 2 cut(s) 3, 230
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 7 cut(s) 24, 27, 30, 117, 235, 593, 596
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 7 cut(s) 24, 27, 30, 117, 235, 593, 596
GluI GCNGC 7 cut(s) 24, 27, 30, 117, 235, 593, 596
HaeIII GGCC 2 cut(s) 15, 592
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 182
Hin1II CATG 5 cut(s) 359, 430, 455, 622, 705
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 2 cut(s) 551, 632
HpaII CCGG 1 cut(s) 111
HphI GGTGA 4 cut(s) 188, 688, 694, 751
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 67, 637
Hpy188III TCNNGA 4 cut(s) 575, 602, 697, 770
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 3 cut(s) 115, 673, 748
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 3 cut(s) 126, 363, 606
HpyCH4V TGCA 2 cut(s) 308, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 3 cut(s) 126, 363, 606
Hsp92II CATG 5 cut(s) 359, 430, 455, 622, 705
Kzo9I GATC 1 cut(s) 581
LguI GCTCTTC 1 cut(s) 608
LmnI GCTCC 4 cut(s) 7, 100, 113, 260
LpnPI CCDG 7 cut(s) 33, 124, 183, 378, 396, 423, 755
Lsp1109I GCAGC 5 cut(s) 38, 41, 128, 221, 582
LweI GCATC 1 cut(s) 31
MaeII ACGT 3 cut(s) 126, 363, 606
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 583
MbiI CCGCTC 1 cut(s) 10
MboI GATC 1 cut(s) 581
MboII GAAGA 6 cut(s) 62, 379, 381, 622, 625, 635
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 244, 761
MluCI AATT 6 cut(s) 183, 288, 348, 400, 521, 791
MlyI GAGTC 1 cut(s) 545
MnlI CCTC 9 cut(s) 99, 111, 326, 412, 470, 536, 609, 631, 756
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 32, 595
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 411
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 278
NdeII GATC 1 cut(s) 581
NlaIII CATG 5 cut(s) 359, 430, 455, 622, 705
NlaIV GGNNCC 3 cut(s) 14, 583, 591
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 608
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 7 cut(s) 25, 28, 31, 118, 236, 594, 597
PleI GAGTC 1 cut(s) 545
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 2 cut(s) 127, 364
Psp6I CCWGG 1 cut(s) 409
PspCI CACGTG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 14, 583, 591
PspPI GGNCC 4 cut(s) 13, 590, 667, 772
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 2 cut(s) 87, 745
RsaNI GTAC 2 cut(s) 86, 744
RseI CAYNNNNRTG 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 608
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 7 cut(s) 24, 27, 30, 117, 235, 593, 596
Sau3AI GATC 1 cut(s) 581
Sau96I GGNCC 4 cut(s) 13, 590, 667, 772
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 2 cut(s) 111, 411
SduI GDGCHC 2 cut(s) 244, 761
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 2 cut(s) 667, 772
SmiMI CAYNNNNRTG 1 cut(s) 431
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 6 cut(s) 183, 288, 348, 400, 521, 791
SsiI CCGC 7 cut(s) 10, 24, 32, 199, 237, 558, 593
StyD4I CCNGG 2 cut(s) 109, 409
StyI CCWWGG 3 cut(s) 508, 538, 585
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 3 cut(s) 129, 366, 609
TaqI TCGA 1 cut(s) 576
TasI AATT 6 cut(s) 183, 288, 348, 400, 521, 791
TatI WGTACW 1 cut(s) 743
TauI GCSGC 2 cut(s) 26, 595
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 5 cut(s) 26, 29, 116, 234, 595
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 265, 443, 462
TspGWI ACGGA 1 cut(s) 594
VpaK11BI GGWCC 2 cut(s) 667, 772
XapI RAATTY 3 cut(s) 400, 521, 791
XceI RCATGY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.