Rh2AG250800

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016241
Physical Location & Seq
Forward (+)
28383204 .. 28416000
32797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG250800.1

Sequence Viewer

Length: 984 bp
ATGGAGGAGCGGGGTCCACCTGCAACCGGTGCCGACGACATCAATGAAGACCCAGCTCCAACGTCAGAGACGCAGCTAGTACCCTATGGTCCCATCCCCTCACCCAACGAAACATACGTAATCCATTTCCCTAAAGACCAAATCTACCGCGTGCCGCCCCCTGAAAATGCCATACTCGTCGATAAGCACCGGCCGGTGACGAAGAAGAAATCACGCAAGTCTTGTTGCTGGGCTCTCCTTGTCGTTTTGCTTGTCCTGTTCCTCATATTCGGCATAGCCTTGCTGACATGGTACCTCGTTTTGAGCCATAAAGACCCTACATTCTCTATCAGTCAGGTCCAAGTGAAGCAATCGAATTCTTCAGACAGAAGCAAGGATTCAGATCTAGGATATGACATCACCTTGAAAGCTGTTAATCCTAATGATAAGATGAGCATACGCTTCGAAAATGGTGGTGGAACTTCCCTTTTATATAGGCAAAAGGACATTGCTAAGGGCAAATTTCCATCTGATCAACTAGATGATGATGAGTCGGACACCGTAAAACTTGTTCTAAACGGAACAAGCGCAGAGTTGCCTAGCGAGGTCCAGGAAAGCATCGAAGAAACTAGTTCGAAGAAGACGACGCCGTTGTCCCTAAGTCTGAAAATAAGTGACCTTCCTGTACATATCAAATATGGGTTTTTTAAGAGTTGGGATGAGAAAGCGGTAGTTGAATGCAAATTCAAGGTGGACACATTGGGGTCGGGTACAAAGCCTCTACGCTTGTGGGAGGAGAAGTCACAGTGTTTGAATTCCCTTCCATCATCTGAACAAAGCAACAACACAACCAATTTTGATATATGTATCATGTATGCATATATATCGAAAAATATCGAACAATCGACAACATTTCTTAACAGAATGCTATCAGGAACCACACAAGCTATAAATCAAAACCCAGGCTTATCAGCAACTCACAACAACACAGAGGATATTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

327

Amino Acids

36.44

Weight (kDa)

5.48

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21180
malus_domestica MD01G1027300.v1.1 MD15G1326600.v1.1
prunus_persica Prupe.6G182500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115011
rosa_laevigata RLG00000018137
rosa_multiflora Rmu_sc0002764.1_g000005
rosa_roxburghii Rroxscaffold_2G00130470
rosa_rugosa Rorug02G0192200
rosa_samantha Rh2AG250800 Rh2BG260200 Rh2CG255000 Rh2DG258900
rosa_wichuraiana Rw2G019560 Rw2G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 2 cut(s) 29, 291
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 10, 148, 155, 707
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 4 cut(s) 355, 500, 722, 793
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 4 cut(s) 81, 293, 666, 751
AfiI CCNNNNNNNGG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 406, 716, 727, 793
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 2 cut(s) 588, 940
AluBI AGCT 4 cut(s) 56, 76, 410, 926
AluI AGCT 4 cut(s) 56, 76, 410, 926
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 4 cut(s) 355, 500, 722, 793
AsiGI ACCGGT 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 4 cut(s) 14, 89, 337, 586
AsuHPI GGTGA 3 cut(s) 93, 208, 391
AsuII TTCGAA 2 cut(s) 444, 614
AvaII GGWCC 4 cut(s) 14, 89, 337, 586
BanI GGYRCC 2 cut(s) 29, 291
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 54, 626
BbvI GCAGC 1 cut(s) 85
BccI CCATC 3 cut(s) 101, 514, 811
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 4 cut(s) 424, 458, 846, 880
BciT130I CCWGG 2 cut(s) 590, 942
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 5 cut(s) 77, 386, 518, 579, 609
BfuAI ACCTGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 74, 155
BlsI GCNGC 2 cut(s) 75, 156
Bme1390I CCNGG 2 cut(s) 590, 942
Bme18I GGWCC 4 cut(s) 14, 89, 337, 586
BmgT120I GGNCC 4 cut(s) 14, 89, 337, 586
BmiI GGNNCC 5 cut(s) 15, 31, 91, 293, 916
BmrFI CCNGG 2 cut(s) 590, 942
BmsI GCATC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 54, 626
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 2 cut(s) 444, 614
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 940
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 3 cut(s) 26, 189, 193
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 590, 942
BseDI CCNNGG 1 cut(s) 940
BseGI GGATG 2 cut(s) 93, 703
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 20, 788
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 2 cut(s) 52, 228
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 2 cut(s) 29, 291
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 27, 190, 194
BslFI GGGAC 2 cut(s) 75, 619
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 75, 619
BsmI GAATGC 2 cut(s) 722, 909
BsnI GGCC 1 cut(s) 193
Bsp119I TTCGAA 2 cut(s) 444, 614
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 2 cut(s) 382, 511
BspACI CCGC 4 cut(s) 10, 148, 155, 707
BspANI GGCC 1 cut(s) 193
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 5 cut(s) 15, 31, 91, 293, 916
BspMI ACCTGC 1 cut(s) 28
BspT104I TTCGAA 2 cut(s) 444, 614
BspT107I GGYRCC 2 cut(s) 29, 291
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 3 cut(s) 26, 189, 193
BsrGI TGTACA 1 cut(s) 664
BssAI RCCGGY 3 cut(s) 26, 189, 193
BssECI CCNNGG 1 cut(s) 940
BssMI GATC 2 cut(s) 382, 511
BssNI GRCGYC 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 590, 942
Bst4CI ACNGT 2 cut(s) 541, 786
BstACI GRCGYC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 2 cut(s) 444, 614
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 492, 638
BstF5I GGATG 2 cut(s) 93, 703
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 2 cut(s) 385, 514
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 382, 511
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 590, 942
BstSCI CCNGG 2 cut(s) 588, 940
BstSNI TACGTA 1 cut(s) 118
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 2 cut(s) 54, 626
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 93, 703
BtsIMutI CAGTG 1 cut(s) 791
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 569
Cfr10I RCCGGY 3 cut(s) 26, 189, 193
Cfr13I GGNCC 4 cut(s) 14, 89, 337, 586
CseI GACGC 2 cut(s) 79, 634
Csp6I GTAC 4 cut(s) 80, 292, 665, 750
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 288, 850
CviQI GTAC 4 cut(s) 80, 292, 665, 750
DdeI CTNAG 2 cut(s) 492, 638
DpnI GATC 2 cut(s) 384, 513
DpnII GATC 2 cut(s) 382, 511
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 191
EagI CGGCCG 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 191
Eco105I TACGTA 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 4 cut(s) 14, 89, 337, 586
Eco52I CGGCCG 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 345
EcoRI GAATTC 2 cut(s) 355, 793
EcoRII CCWGG 2 cut(s) 588, 940
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 291, 853
FaqI GGGAC 2 cut(s) 75, 619
FatI CATG 2 cut(s) 287, 849
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 74, 155
FokI GGATG 2 cut(s) 80, 710
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 74, 155
FspBI CTAG 5 cut(s) 77, 386, 518, 579, 609
GlaI GCGC 1 cut(s) 568
GluI GCNGC 2 cut(s) 74, 155
GsaI CCCAGC 2 cut(s) 56, 232
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 27, 190, 194
HgaI GACGC 2 cut(s) 79, 634
HhaI GCGC 1 cut(s) 569
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 2 cut(s) 291, 853
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HinfI GANTC 2 cut(s) 377, 530
HpaII CCGG 3 cut(s) 27, 190, 194
HphI GGTGA 3 cut(s) 93, 208, 391
Hpy166II GTNNAC 2 cut(s) 17, 733
Hpy188I TCNGA 7 cut(s) 67, 364, 382, 511, 535, 645, 811
Hpy188III TCNNGA 1 cut(s) 912
Hpy8I GTNNAC 2 cut(s) 17, 733
Hpy99I CGWCG 3 cut(s) 38, 182, 628
HpyAV CCTTC 2 cut(s) 668, 809
HpyCH4III ACNGT 2 cut(s) 541, 786
HpyCH4IV ACGT 2 cut(s) 62, 117
HpyCH4V TGCA 3 cut(s) 23, 720, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 492, 638
HpySE526I ACGT 2 cut(s) 62, 117
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 2 cut(s) 291, 853
HspAI GCGC 1 cut(s) 567
KpnI GGTACC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 382, 511
LmnI GCTCC 2 cut(s) 7, 61
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 606
MaeI CTAG 5 cut(s) 77, 386, 518, 579, 609
MaeII ACGT 2 cut(s) 62, 117
MaeIII GTNAC 3 cut(s) 196, 653, 780
MalI GATC 2 cut(s) 384, 513
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 382, 511
MboII GAAGA 7 cut(s) 59, 214, 217, 351, 614, 628, 631
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 355, 500, 722, 793, 832
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 2 cut(s) 83, 513
MnlI CCTC 7 cut(s) 109, 272, 305, 577, 766, 768, 964
Mph1103I ATGCAT 1 cut(s) 859
MseI TTAA 3 cut(s) 414, 687, 897
MspI CCGG 3 cut(s) 27, 190, 194
MspR9I CCNGG 2 cut(s) 590, 942
Mva1269I GAATGC 2 cut(s) 722, 909
MvaI CCWGG 2 cut(s) 590, 942
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 382, 511
NlaIII CATG 2 cut(s) 291, 853
NlaIV GGNNCC 5 cut(s) 15, 31, 91, 293, 916
NmuCI GTSAC 3 cut(s) 196, 653, 780
NsiI ATGCAT 1 cut(s) 859
NspV TTCGAA 2 cut(s) 444, 614
PaqCI CACCTGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 620
PctI GAATGC 2 cut(s) 722, 909
PfeI GAWTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 588
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 2 cut(s) 75, 156
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 588, 940
PspFI CCCAGC 2 cut(s) 52, 228
PspGI CCWGG 2 cut(s) 588, 940
PspN4I GGNNCC 5 cut(s) 15, 31, 91, 293, 916
PspPI GGNCC 4 cut(s) 14, 89, 337, 586
PsrI GAACNNNNNNTAC 2 cut(s) 534, 566
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 4 cut(s) 81, 293, 666, 751
RsaNI GTAC 4 cut(s) 80, 292, 665, 750
SaqAI TTAA 3 cut(s) 414, 687, 897
SatI GCNGC 2 cut(s) 74, 155
Sau3AI GATC 2 cut(s) 382, 511
Sau96I GGNCC 4 cut(s) 14, 89, 337, 586
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 2 cut(s) 590, 942
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 1 cut(s) 606
SfuI TTCGAA 2 cut(s) 444, 614
SinI GGWCC 4 cut(s) 14, 89, 337, 586
SnaBI TACGTA 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 5 cut(s) 355, 500, 722, 793, 832
SsiI CCGC 4 cut(s) 10, 148, 155, 707
SspMI CTAG 5 cut(s) 77, 386, 518, 579, 609
StyD4I CCNGG 2 cut(s) 588, 940
TaaI ACNGT 2 cut(s) 541, 786
TaiI ACGT 2 cut(s) 65, 120
TaqI TCGA 8 cut(s) 180, 353, 444, 600, 614, 866, 876, 884
TasI AATT 5 cut(s) 355, 500, 722, 793, 832
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 414, 687, 897
Tru9I TTAA 3 cut(s) 414, 687, 897
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 3 cut(s) 196, 653, 780
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 3 cut(s) 196, 653, 780
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 1 cut(s) 791
VpaK11BI GGWCC 4 cut(s) 14, 89, 337, 586
XapI RAATTY 4 cut(s) 355, 500, 722, 793
XspI CTAG 5 cut(s) 77, 386, 518, 579, 609
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.