Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Forward (+)

13746431 .. 13747575

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGAGCTCTCTCTCAATTCTTCTCCCACCTCTACACCATCTCCATCATCTTCTTCACCCTCTTCGCCCTCGAAGTCGTCATCCTCGTCCGCTCCATCACCGGCCTCAAACCCAACTCGGAGAAACGCGTCATCACCACCGCGCAGTACCTCAAGCTCATCGACCAGAAGAACCCCACGGTCTCCTACTCTAGCAAGAAGAAGAACCTGTTGAGGGCTCACGAGGAGTGCTCGGTGTGCTTGTCGGAGTTCGAAGAGGGGGAGAAAATCAGGCAGCTGAAATGCAAGCACAGGTTTCACAAGGACTGCGTTGACAAGTGGTTGCAGCAGTATTGGGCCACGTGTCCGCTTTGCAGGACGAAGGTGGTGCCGGACGACGTTGTGGCGAGCTACCACCGGCTGAGGAATCAAGTGGAGTACGACGGCAGCGATGAGGAGCTGATCTTCTTGTTATCTTCGTTGCAGGGTAATAATTTCCAGAGATTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

164

Amino Acids

19.05

Weight (kDa)

8.72

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	74 - 119	4.8e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	76 - 119	5.6e-14	Ring finger domain
zf-RING_11	PF17123	76 - 104	1.2e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	76 - 118	5.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	76 - 120	9.2e-06	zinc-RING finger domain
zf-C3HC4	PF00097	77 - 118	1.9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	93
AccII	CGCG	2 cut(s)	129, 143
AciI	CCGC	3 cut(s)	91, 141, 347
AcvI	CACGTG	1 cut(s)	342
AfaI	GTAC	2 cut(s)	149, 419
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	2 cut(s)	127, 341
AluBI	AGCT	5 cut(s)	8, 157, 277, 390, 439
AluI	AGCT	5 cut(s)	8, 157, 277, 390, 439
Alw21I	GWGCWC	2 cut(s)	10, 233
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	103, 336
ApeKI	GCWGC	3 cut(s)	274, 325, 426
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	49, 91, 127
AsuII	TTCGAA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	2 cut(s)	10, 220
BauI	CACGAG	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	10, 233
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	286, 337, 438
BccI	CCATC	3 cut(s)	47, 53, 104
BceAI	ACGGC	1 cut(s)	439
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	275, 326, 427
BlsI	GCNGC	3 cut(s)	276, 327, 428
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu10I	CCTNAGC	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	101, 396
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	239, 449
BseXI	GCAGC	3 cut(s)	286, 337, 438
Bsh1236I	CGCG	2 cut(s)	129, 143
BshFI	GGCC	2 cut(s)	105, 338
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	10, 233
BsiSI	CCGG	3 cut(s)	102, 371, 397
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	105, 338
Bso31I	GGTCTC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	10, 220, 233
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	3 cut(s)	91, 141, 347
BspANI	GGCC	2 cut(s)	105, 338
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	129, 143
BspLI	GGNNCC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	101, 396
BssAI	RCCGGY	2 cut(s)	101, 396
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	68, 249
BstBAI	YACGTR	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	287, 388
BstDEI	CTNAG	1 cut(s)	401
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	129, 143
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstUI	CGCG	2 cut(s)	129, 143
BstV1I	GCAGC	3 cut(s)	286, 337, 438
BsuRI	GGCC	2 cut(s)	105, 338
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	287, 388
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	101, 396
Cfr13I	GGNCC	1 cut(s)	336
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	148, 418
CviJI	RGCY	9 cut(s)	8, 105, 157, 218, 277, 338, 390, 400, 439
CviKI_1	RGCY	9 cut(s)	8, 105, 157, 218, 277, 338, 390, 400, 439
CviQI	GTAC	2 cut(s)	148, 418
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	68, 249
EarI	CTCTTC	2 cut(s)	68, 249
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	10, 220
Eco31I	GGTCTC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	8
EcoT38I	GRGCYC	2 cut(s)	10, 220
Fnu4HI	GCNGC	3 cut(s)	275, 326, 427
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	10, 220
Fsp4HI	GCNGC	3 cut(s)	275, 326, 427
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	275, 326, 427
HaeIII	GGCC	2 cut(s)	105, 338
HapII	CCGG	3 cut(s)	102, 371, 397
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	406, 483
HpaII	CCGG	3 cut(s)	102, 371, 397
HphI	GGTGA	3 cut(s)	49, 91, 127
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	121, 247
Hpy188III	TCNNGA	2 cut(s)	221, 478
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	380, 425
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	341, 378
HpyCH4V	TGCA	4 cut(s)	285, 325, 354, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	2 cut(s)	341, 378
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	3 cut(s)	5, 98, 436
LpnPI	CCDG	9 cut(s)	115, 179, 221, 256, 277, 340, 384, 410, 449
Lsp1109I	GCAGC	3 cut(s)	286, 337, 438
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	341, 378
MalI	GATC	1 cut(s)	443
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	1 cut(s)	441
MhlI	GDGCHC	3 cut(s)	10, 220, 233
MluCI	AATT	2 cut(s)	17, 472
MluI	ACGCGT	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	3 cut(s)	102, 371, 397
MvnI	CGCG	2 cut(s)	129, 143
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	1 cut(s)	441
NlaIV	GGNNCC	1 cut(s)	369
NspV	TTCGAA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 426
PfeI	GAWTC	2 cut(s)	406, 483
PkrI	GCNGC	3 cut(s)	276, 327, 428
PmaCI	CACGTG	1 cut(s)	342
PmlI	CACGTG	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	10
PspCI	CACGTG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	149, 419
RsaNI	GTAC	2 cut(s)	148, 418
SacI	GAGCTC	1 cut(s)	10
SatI	GCNGC	3 cut(s)	275, 326, 427
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	336
SduI	GDGCHC	3 cut(s)	10, 220, 233
SfuI	TTCGAA	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	17, 472
SsiI	CCGC	3 cut(s)	91, 141, 347
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	344, 381
TaqI	TCGA	3 cut(s)	72, 162, 252
TasI	AATT	2 cut(s)	17, 472
TfiI	GAWTC	2 cut(s)	406, 483
TseI	GCWGC	3 cut(s)	274, 325, 426
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.