Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18269629 .. 18270120

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGAGCTCTCTCTCAATTCTTCTCCCACCTCTACACCATAACCCTAATCTTCTTCACACTCCTCATCCTCGAAATTGTAATTCTCGTCCGTTCGATTGCCGGTCTCAATCCGAATTCGAGCAAACGTGTGATCACTACCACACAATACCTCAAGCTCATAGAGCAAAAAAATCCAACAACGTGTTACACACAAAAATTGAGGAGCGTGAGGCCAGAGGCAACAGAATGCTCAGTTTGCTTATCAGACTTTGAGGAAGGTGACAAGATTAGGCAGCTCAAATGTAAGCACACATTCCACCAGAACTGCCTTGACAGGTGGCTCCAACAGTATTGGGCCACGTGTCCTCTTTGCCGGACTAAGGTCTTGTCGGACGATGTTGTGGCTAGCTATCATCGGCTGAGAAATCAGGTACAATATGATGGCAGCGATGAGGAGCTTATTTTCTTGTTATCTTCGTTACAGGGTAACAGCTTACACAGATTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

164

Amino Acids

18.94

Weight (kDa)

8.48

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	115
AcvI	CACGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	3 cut(s)	127, 182, 341
AluBI	AGCT	6 cut(s)	8, 157, 277, 390, 439, 474
AluI	AGCT	6 cut(s)	8, 157, 277, 390, 439, 474
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	212, 336
ApeKI	GCWGC	2 cut(s)	274, 426
ApoI	RAATTY	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	286, 438
BccI	CCATC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	275, 427
BlsI	GCNGC	2 cut(s)	276, 428
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	323
BmtI	GCTAGC	1 cut(s)	390
BoxI	GACNNNNGTC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	101
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	246, 392
BseRI	GAGGAG	3 cut(s)	53, 217, 449
BseXI	GCAGC	2 cut(s)	286, 438
BshFI	GGCC	2 cut(s)	214, 338
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	102, 355
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	214, 338
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	132
BspANI	GGCC	2 cut(s)	214, 338
BspCNI	CTCAG	2 cut(s)	245, 393
BspLI	GGNNCC	1 cut(s)	323
BspOI	GCTAGC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	232, 360, 401
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 237
BstPAI	GACNNNNGTC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	286, 438
BsuRI	GGCC	2 cut(s)	214, 338
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	413
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	3 cut(s)	232, 360, 401
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	10
FaiI	YATR	3 cut(s)	41, 161, 420
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	275, 427
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	275, 427
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	275, 427
HaeIII	GGCC	2 cut(s)	214, 338
HapII	CCGG	2 cut(s)	102, 355
HpaII	CCGG	2 cut(s)	102, 355
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	114, 247, 373
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	3 cut(s)	127, 182, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 237
HpyF3I	CTNAG	3 cut(s)	232, 360, 401
HpySE526I	ACGT	3 cut(s)	127, 182, 341
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	4 cut(s)	5, 204, 327, 436
LpnPI	CCDG	7 cut(s)	115, 228, 301, 314, 368, 395, 449
Lsp1109I	GCAGC	2 cut(s)	286, 438
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	3 cut(s)	127, 182, 341
MaeIII	GTNAC	4 cut(s)	185, 260, 459, 467
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	13, 43, 46, 447
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	5 cut(s)	17, 75, 81, 115, 197
MmeI	TCCRAC	3 cut(s)	200, 349, 351
MspI	CCGG	2 cut(s)	102, 355
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	163, 237
NdeII	GATC	1 cut(s)	132
NheI	GCTAGC	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	276, 428
PmaCI	CACGTG	1 cut(s)	342
PmlI	CACGTG	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	342
PshAI	GACNNNNGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	10
PspCI	CACGTG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	336
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	10
SatI	GCNGC	2 cut(s)	275, 427
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	17, 75, 81, 115, 197
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	3 cut(s)	130, 185, 344
TaqI	TCGA	3 cut(s)	72, 95, 119
TasI	AATT	5 cut(s)	17, 75, 81, 115, 197
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	274, 426
Tsp45I	GTSAC	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	80
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.