Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Reverse (-)

4368016 .. 4368480

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTGCTATCTCTCGATTTATCTCCCACCTCATCATCTTCTTTACTCTTCTCATCCTCGAAATCGTAGTCCTTGTCCGTTCCGTCGCCGGACTAAACCCAAATTCAGGCAAACGTGTCATCACCACCACACAGTATCTCAAACTCATAGAGCAAAAGAATCCCACCATTTGCTACACAAAAAAGTTGAAGGCCACAGAATGCTCAGTTTGCTTATCGGATTTTGAGGAAGGTGACAAGGTTAGGGAGCTGAAATGCAAGCACACATTTCACCAGGATTGCCTTGACAAGTGGCTGCAACAGTATTGGGCCACCTGTCCACTTTGCAGGACTAAGGTGTTGTCGGACGATGTTGTGGCTAGTTATCATCGGCTGAGAAATCAGGTAGAATACGACGGCCGAGATGAGGAGTTGATTTTCTTGTTATCTTCGTTGCAGGGTAATACATTACATAGATTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

8.47

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	66 - 110	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	67 - 110	1.3e-14	Ring finger domain
zf-RING_11	PF17123	67 - 95	1e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	67 - 109	5.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	67 - 111	1.5e-06	zinc-RING finger domain
zf-C3HC4	PF00097	68 - 109	7.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	68 - 107	1.7e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	107, 406
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AoxI	GGCC	3 cut(s)	192, 309, 397
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	115, 245, 263
BbvI	GCAGC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 406
BseBI	CCWGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	107, 406
BseMII	CTCAG	2 cut(s)	219, 365
BseRI	GAGGAG	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	3 cut(s)	194, 311, 399
BsiEI	CGRYCG	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	107, 406
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	194, 311, 399
BspANI	GGCC	3 cut(s)	194, 311, 399
BspCNI	CTCAG	2 cut(s)	218, 366
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	135, 303
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	205, 333, 374
BstF5I	GGATG	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	194, 311, 399
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	309
CviJI	RGCY	7 cut(s)	194, 250, 295, 311, 359, 373, 399
CviKI_1	RGCY	7 cut(s)	194, 250, 295, 311, 359, 373, 399
DdeI	CTNAG	3 cut(s)	205, 333, 374
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	273
FaiI	YATR	2 cut(s)	149, 453
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	194, 311, 399
HapII	CCGG	1 cut(s)	90
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	115, 245, 263
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	220, 346
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	2 cut(s)	89, 398
HpyAV	CCTTC	2 cut(s)	184, 224
HpyCH4III	ACNGT	2 cut(s)	135, 303
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	258, 298, 327, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	3 cut(s)	205, 333, 374
HpySE526I	ACGT	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	93, 103, 260, 287, 313, 328, 368, 422
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	233
MboII	GAAGA	3 cut(s)	31, 41, 420
MluCI	AATT	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	41, 68, 220, 400
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	8 cut(s)	33, 118, 235, 243, 252, 317, 339, 387
Sse9I	AATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	135, 303
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	16, 60
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	68, 73
XapI	RAATTY	1 cut(s)	103
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.