Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Forward (+)

26787958 .. 26788443

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAGCTCTCTCTCAATTCTTCTCCCACCTCTACACCATCTCCATCATCTTCTTCACTCTCTTCGCTCTCGAAGTCGTCATCCTCGTCCGCTCCATCACCGGCCTGAAACCCAACTCGGAGAAACGCGTCATCACCACCGCACAGTACCTGAAGCTCATCGACCAGAAGAACCCCACGGTTTCCTACTCCAAGAAGAAGAAGCTGAGGGCTCACGAGGACTGCTCGGTGTGCTTGTCGGAGTTCGAAGAGGGCGAGAAGATTAGGCAGCTGAAATGCAAGCACAGGTTTCACAAGGACTGCGTTGATAAGTGGTTGCAGCAGTACTGGGCCACGTGTCCGCTTTGCAGGACGAAGGTGCTGTCGGACGACGTGGTGGCGAGTTATCACCGACTGAGAAATCAAGTGGAGTATGATGGCAGCGATGAGGAGCTAATCTTCTTGTTATCTTCGTTGCAGGGTAACAATTTCCATAGATTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

162

Amino Acids

18.86

Weight (kDa)

8.88

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	71 - 117	5e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	74 - 117	7.6e-14	Ring finger domain
zf-RING_11	PF17123	74 - 102	1.2e-11	RING-like zinc finger
zf-RING_5	PF14634	74 - 118	8.5e-06	zinc-RING finger domain
zf-C3HC4_2	PF13923	75 - 116	8.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	75 - 116	1.8e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	93
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	91, 141, 341
AcuI	CTGAAG	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	149, 326
AflIII	ACRYGT	2 cut(s)	127, 335
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	5 cut(s)	8, 157, 205, 271, 433
AluI	AGCT	5 cut(s)	8, 157, 205, 271, 433
Alw21I	GWGCWC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	103, 330
ApeKI	GCWGC	3 cut(s)	268, 319, 420
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	91, 127, 380
AsuII	TTCGAA	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	10, 214
BauI	CACGAG	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	280, 331, 432
BccI	CCATC	4 cut(s)	47, 53, 104, 410
BisI	GCNGC	3 cut(s)	269, 320, 421
BlsI	GCNGC	3 cut(s)	270, 321, 422
BmcAI	AGTACT	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	197, 386
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	280, 331, 432
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	105, 332
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	2 cut(s)	105, 332
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	10, 214
BspACI	CCGC	3 cut(s)	91, 141, 341
BspANI	GGCC	2 cut(s)	105, 332
BspCNI	CTCAG	2 cut(s)	198, 387
BspFNI	CGCG	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	147, 181
Bst6I	CTCTTC	2 cut(s)	68, 243
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	206, 395
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	280, 331, 432
BsuRI	GGCC	2 cut(s)	105, 332
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	438
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	148, 325
CviJI	RGCY	8 cut(s)	8, 105, 157, 205, 212, 271, 332, 433
CviKI_1	RGCY	8 cut(s)	8, 105, 157, 205, 212, 271, 332, 433
CviQI	GTAC	2 cut(s)	148, 325
DdeI	CTNAG	2 cut(s)	206, 395
Eam1104I	CTCTTC	2 cut(s)	68, 243
EarI	CTCTTC	2 cut(s)	68, 243
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	10, 214
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	8
EcoT38I	GRGCYC	2 cut(s)	10, 214
FaiI	YATR	2 cut(s)	414, 474
Fnu4HI	GCNGC	3 cut(s)	269, 320, 421
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	10, 214
Fsp4HI	GCNGC	3 cut(s)	269, 320, 421
GluI	GCNGC	3 cut(s)	269, 320, 421
HaeIII	GGCC	2 cut(s)	105, 332
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	91, 127, 380
Hpy188I	TCNGA	3 cut(s)	121, 241, 367
Hpy188III	TCNNGA	2 cut(s)	71, 215
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	147, 181
HpyCH4IV	ACGT	2 cut(s)	335, 372
HpyCH4V	TGCA	4 cut(s)	279, 319, 348, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	206, 395
HpySE526I	ACGT	2 cut(s)	335, 372
LmnI	GCTCC	3 cut(s)	5, 98, 430
LpnPI	CCDG	8 cut(s)	115, 119, 164, 179, 271, 313, 334, 443
Lsp1109I	GCAGC	3 cut(s)	280, 331, 432
MaeII	ACGT	2 cut(s)	335, 372
MaeIII	GTNAC	1 cut(s)	461
MbiI	CCGCTC	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	10, 214
MluCI	AATT	2 cut(s)	17, 466
MluI	ACGCGT	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	219, 345
MnlI	CCTC	6 cut(s)	41, 95, 201, 211, 244, 421
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 252
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	270, 321, 422
PmaCI	CACGTG	1 cut(s)	336
PmlI	CACGTG	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	10
PspCI	CACGTG	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	149, 326
RsaNI	GTAC	2 cut(s)	148, 325
SacI	GAGCTC	1 cut(s)	10
SatI	GCNGC	3 cut(s)	269, 320, 421
Sau96I	GGNCC	1 cut(s)	330
ScaI	AGTACT	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	10, 214
SfuI	TTCGAA	1 cut(s)	246
Sse9I	AATT	2 cut(s)	17, 466
SsiI	CCGC	3 cut(s)	91, 141, 341
SstI	GAGCTC	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	147, 181
TaiI	ACGT	2 cut(s)	338, 375
TaqI	TCGA	3 cut(s)	72, 162, 246
TasI	AATT	2 cut(s)	17, 466
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	477
TseI	GCWGC	3 cut(s)	268, 319, 420
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.