Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Forward (+)

27889130 .. 27891083

Gene Structure 1954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGAGCTCTCTCTCAATTCTTCTCCCACCTCTACACCATCTCCATCATCTTCTTCACTCTCTTCGCCCTCGAAGTCGTCATCCTCGTCCGCTCCATCACCGGCCTGAAACCCAACTCGGAGAAACGCGTCATCACCACCGCACAGTACCTGAAGCTCATCGACCAGAAGAACCCCACGGTTTCCTACTCCAAGAAGAATAAGCTGAGGGCTCACGAGGACTGTTCGGTGTGCTTGTCGGAGTTCGAAGAGGGCGAGAAGATTAGGCAGCTGAAATGCAAGCACAGGTTTCACAAGGACTGCGTTGATAAGTGGTTGCAGCAGTACTGGGCCACGTGTCCGCTTTGCAGGACGAAGGTGCTGTCGGACGACGTGGTGGCGAGTTATCACCGACTGAGAAATCAAGTGGAGTATGATGGCAGCGATGAGGAGCTAATCTTCTTGTTATCTTCGTTGCAGGGTCTTTTCTTGTCTCTCTCCCCCCTCCTCTTCCAGACCACCACCAAGGTCCTCTCTCTCTATCCTTCCCGATCTTCACCAAGGACTCCGCCGCCACCGCCATTATCAACCTCCACAACCTTGCCACCTCACAACAACCGCTCATTGACCGTGAAAACCTTAAGTTCATTCTCATCATCCTCCTCATCGTCGTCGTCACCATCGTCGCTTCATTCTTCCTCTGCCGAATCCTCTGCTGCATCCACGATGCCCCCGCCCGAGTCTCCAGCCGCGGAGTATCTCCGGCTGAATCCGCCACCGCCATGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

28.6

Weight (kDa)

8.99

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	71 - 117	8.3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	74 - 117	1.7e-13	Ring finger domain
zf-RING_11	PF17123	74 - 102	2.4e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	75 - 116	1.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	75 - 116	4e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	93, 600
AccII	CGCG	2 cut(s)	129, 731
AcuI	CTGAAG	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	149, 326
AflII	CTTAAG	1 cut(s)	619
AflIII	ACRYGT	2 cut(s)	127, 335
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	5 cut(s)	8, 157, 205, 271, 433
AluI	AGCT	5 cut(s)	8, 157, 205, 271, 433
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	477, 726
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	3 cut(s)	103, 330, 764
ApeKI	GCWGC	4 cut(s)	268, 319, 420, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	3 cut(s)	330, 508, 765
AsuHPI	GGTGA	5 cut(s)	91, 127, 380, 528, 648
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	10, 214
BauI	CACGAG	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	280, 331, 432, 682
BccI	CCATC	5 cut(s)	47, 53, 104, 410, 667
BcgI	CGANNNNNNTGC	2 cut(s)	674, 708
BcoDI	GTCTC	2 cut(s)	477, 726
BfrI	CTTAAG	1 cut(s)	619
BisI	GCNGC	6 cut(s)	269, 320, 421, 551, 696, 729
BlsI	GCNGC	6 cut(s)	270, 321, 422, 552, 697, 730
BmcAI	AGTACT	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	716
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	330, 508, 765
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	696, 707
BmuI	ACTGGG	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	336
BsaJI	CCNNGG	5 cut(s)	177, 504, 539, 729, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	5 cut(s)	177, 504, 539, 729, 761
BseGI	GGATG	3 cut(s)	81, 635, 698
BseMII	CTCAG	2 cut(s)	197, 386
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	3 cut(s)	443, 476, 631
BseXI	GCAGC	4 cut(s)	280, 331, 432, 682
Bsh1236I	CGCG	2 cut(s)	129, 731
BshFI	GGCC	3 cut(s)	105, 332, 766
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	102, 742
BsmAI	GTCTC	2 cut(s)	477, 726
BsnI	GGCC	3 cut(s)	105, 332, 766
BsoBI	CYCGRG	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	10, 214
Bsp143I	GATC	1 cut(s)	530
Bsp19I	CCATGG	1 cut(s)	761
BspANI	GGCC	3 cut(s)	105, 332, 766
BspCNI	CTCAG	2 cut(s)	198, 387
BspFNI	CGCG	2 cut(s)	129, 731
BspT104I	TTCGAA	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	619
BsrBI	CCGCTC	2 cut(s)	93, 600
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	5 cut(s)	177, 504, 539, 729, 761
BssMI	GATC	1 cut(s)	530
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	3 cut(s)	504, 539, 761
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	4 cut(s)	147, 181, 224, 610
Bst6I	CTCTTC	3 cut(s)	68, 243, 494
BstAFI	CTTAAG	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	206, 395
BstDSI	CCRYGG	3 cut(s)	177, 729, 761
BstF5I	GGATG	3 cut(s)	81, 635, 698
BstFNI	CGCG	2 cut(s)	129, 731
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	2 cut(s)	477, 726
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 751
BstUI	CGCG	2 cut(s)	129, 731
BstV1I	GCAGC	4 cut(s)	280, 331, 432, 682
BstXI	CCANNNNNNTGG	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	105, 332, 766
BtgI	CCRYGG	3 cut(s)	177, 729, 761
BtgZI	GCGATG	1 cut(s)	438
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	81, 635, 698
Cac8I	GCNNGC	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	330, 508, 765
Cfr42I	CCGCGG	1 cut(s)	732
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	148, 325
CviAII	CATG	1 cut(s)	762
CviQI	GTAC	2 cut(s)	148, 325
DdeI	CTNAG	2 cut(s)	206, 395
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
Eam1104I	CTCTTC	3 cut(s)	68, 243, 494
EarI	CTCTTC	3 cut(s)	68, 243, 494
EciI	GGCGGA	2 cut(s)	537, 741
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	504, 539, 761
Eco24I	GRGCYC	2 cut(s)	10, 214
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	508
EcoT14I	CCWWGG	3 cut(s)	504, 539, 761
EcoT38I	GRGCYC	2 cut(s)	10, 214
ErhI	CCWWGG	3 cut(s)	504, 539, 761
FaeI	CATG	1 cut(s)	765
FaiI	YATR	2 cut(s)	414, 763
FatI	CATG	1 cut(s)	761
FauI	CCCGC	1 cut(s)	720
Fnu4HI	GCNGC	6 cut(s)	269, 320, 421, 551, 696, 729
FokI	GGATG	3 cut(s)	68, 622, 685
FriOI	GRGCYC	2 cut(s)	10, 214
Fsp4HI	GCNGC	6 cut(s)	269, 320, 421, 551, 696, 729
GluI	GCNGC	6 cut(s)	269, 320, 421, 551, 696, 729
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	105, 332, 766
HapII	CCGG	2 cut(s)	102, 742
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	765
HinfI	GANTC	4 cut(s)	544, 686, 719, 748
HpaII	CCGG	2 cut(s)	102, 742
HphI	GGTGA	5 cut(s)	91, 127, 380, 528, 648
Hpy188I	TCNGA	3 cut(s)	121, 241, 367
Hpy188III	TCNNGA	3 cut(s)	215, 493, 528
Hpy99I	CGWCG	4 cut(s)	374, 652, 655, 667
HpyAV	CCTTC	2 cut(s)	349, 534
HpyCH4III	ACNGT	4 cut(s)	147, 181, 224, 610
HpyCH4IV	ACGT	2 cut(s)	335, 372
HpyCH4V	TGCA	5 cut(s)	279, 319, 348, 457, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 751
HpyF3I	CTNAG	2 cut(s)	206, 395
HpySE526I	ACGT	2 cut(s)	335, 372
Hsp92II	CATG	1 cut(s)	765
KspI	CCGCGG	1 cut(s)	732
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	3 cut(s)	5, 98, 430
Lsp1109I	GCAGC	4 cut(s)	280, 331, 432, 682
LweI	GCATC	2 cut(s)	696, 707
MaeII	ACGT	2 cut(s)	335, 372
MaeIII	GTNAC	1 cut(s)	654
MalI	GATC	1 cut(s)	532
MbiI	CCGCTC	2 cut(s)	93, 600
MboI	GATC	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	10, 214
MluCI	AATT	1 cut(s)	17
MluI	ACGCGT	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	538, 728
MmeI	TCCRAC	2 cut(s)	219, 345
MseI	TTAA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	760
MspA1I	CMGCKG	2 cut(s)	271, 731
MspCI	CTTAAG	1 cut(s)	619
MspI	CCGG	2 cut(s)	102, 742
MvnI	CGCG	2 cut(s)	129, 731
MwoI	GCNNNNNNNGC	2 cut(s)	556, 751
NcoI	CCATGG	1 cut(s)	761
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	654
NspV	TTCGAA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 252, 659
PfeI	GAWTC	2 cut(s)	686, 748
PkrI	GCNGC	6 cut(s)	270, 321, 422, 552, 697, 730
PleI	GAGTC	2 cut(s)	538, 727
PmaCI	CACGTG	1 cut(s)	336
PmlI	CACGTG	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	538, 727
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	508
PspCI	CACGTG	1 cut(s)	336
PspPI	GGNCC	3 cut(s)	330, 508, 765
PspPPI	RGGWCCY	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	149, 326
RsaNI	GTAC	2 cut(s)	148, 325
RseI	CAYNNNNRTG	1 cut(s)	760
SacI	GAGCTC	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	6 cut(s)	269, 320, 421, 551, 696, 729
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	3 cut(s)	330, 508, 765
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	2 cut(s)	538, 728
SduI	GDGCHC	2 cut(s)	10, 214
SfaNI	GCATC	2 cut(s)	696, 707
Sfr303I	CCGCGG	1 cut(s)	732
SfuI	TTCGAA	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	10
StyI	CCWWGG	3 cut(s)	504, 539, 761
TaaI	ACNGT	4 cut(s)	147, 181, 224, 610
TaiI	ACGT	2 cut(s)	338, 375
TaqI	TCGA	3 cut(s)	72, 162, 246
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	2 cut(s)	553, 731
TfiI	GAWTC	2 cut(s)	686, 748
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	4 cut(s)	268, 319, 420, 695
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	2 cut(s)	615, 659
Vha464I	CTTAAG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	508
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.