Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Forward (+)

8758956 .. 8759614

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1022200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAGCTATATCTCGATTTATCTCCCACCTCTGCGCCCTCTCCATCATCTTCTTCACTCTTCTCATCCTCGAAATCGTAGTCCTTGCCCGTTCCGTCGCCGGACTAAACCCAAATTCAGGCAAACGTGTCATCACCACCACACAGTATCTCAAACTCATAGAGCAAAAGAATCCCACCATTTGCTACACAAAAAAGTTGAAGGCCACAGAATGCTCAGTTTGCTTATCGGATTTTGAGGAAGGTGACAAGGTTAGGGAGCTGAAATGCAAGCACACATTTCACAAGCATTGCCTTGACAAGTGGCTGCAACAGTATTGGGCCACGTGTCCACTTTGCAGGACTAAGGTATTGTCGGACGATGTTGTGGCCAGTTATCATCGGCTGAAAAATCAGGTAGAATACGACGGCAGCGATGAGGAGTTGATTTTCTTGTTATCTTCGTTGCAGGATGATGTGATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

156

Amino Acids

17.76

Weight (kDa)

6.93

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	70 - 114	3.6e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	71 - 114	2e-14	Ring finger domain
zf-RING_11	PF17123	71 - 99	3.7e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	71 - 113	4.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	71 - 115	4.5e-06	zinc-RING finger domain
zf-C3HC4	PF00097	72 - 113	3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	72 - 111	5.5e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	115
AcvI	CACGTG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	2 cut(s)	127, 326
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	2 cut(s)	8, 262
AluI	AGCT	2 cut(s)	8, 262
AoxI	GGCC	3 cut(s)	204, 321, 369
ApeKI	GCWGC	2 cut(s)	307, 411
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	127, 257
BalI	TGGCCA	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	294, 423
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	308, 412
BlsI	GCNGC	2 cut(s)	309, 413
BmgT120I	GGNCC	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	66, 457
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	294, 423
BshFI	GGCC	3 cut(s)	206, 323, 371
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	3 cut(s)	206, 323, 371
BspANI	GGCC	3 cut(s)	206, 323, 371
BspCNI	CTCAG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	147, 315
Bst6I	CTCTTC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	217, 345
BstF5I	GGATG	2 cut(s)	66, 457
BstHHI	GCGC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	294, 423
BsuRI	GGCC	3 cut(s)	206, 323, 371
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	66, 457
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	321
CviJI	RGCY	7 cut(s)	8, 206, 262, 307, 323, 371, 385
CviKI_1	RGCY	7 cut(s)	8, 206, 262, 307, 323, 371, 385
DdeI	CTNAG	2 cut(s)	217, 345
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	327
FaiI	YATR	2 cut(s)	11, 161
Fnu4HI	GCNGC	2 cut(s)	308, 412
FokI	GGATG	2 cut(s)	53, 464
Fsp4HI	GCNGC	2 cut(s)	308, 412
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	2 cut(s)	308, 412
HaeIII	GGCC	3 cut(s)	206, 323, 371
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	127, 257
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	232, 358
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	2 cut(s)	101, 410
HpyAV	CCTTC	2 cut(s)	196, 236
HpyCH4III	ACNGT	2 cut(s)	147, 315
HpyCH4IV	ACGT	2 cut(s)	127, 326
HpyCH4V	TGCA	4 cut(s)	270, 310, 339, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	217, 345
HpySE526I	ACGT	2 cut(s)	127, 326
HspAI	GCGC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	105, 115, 325, 380, 385, 434
Lsp1109I	GCAGC	2 cut(s)	294, 423
MaeII	ACGT	2 cut(s)	127, 326
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	4 cut(s)	43, 46, 53, 432
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	41, 50, 80, 232, 412
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	309, 413
PmaCI	CACGTG	1 cut(s)	327
PmlI	CACGTG	1 cut(s)	327
Ppu21I	YACGTR	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	321
SatI	GCNGC	2 cut(s)	308, 412
Sau96I	GGNCC	1 cut(s)	321
SetI	ASST	9 cut(s)	10, 33, 130, 247, 255, 264, 329, 351, 399
Sse9I	AATT	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	147, 315
TaiI	ACGT	2 cut(s)	130, 329
TaqI	TCGA	2 cut(s)	16, 72
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	307, 411
Tsp45I	GTSAC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.