Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Reverse (-)

36359897 .. 36360373

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1330200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAGCTCTCTCTAAATTCATCTCCCATCTCTACACCCTCACCATAATCTTCTTCACTCTCCTCATCCTTGAAATCGCAATCCTCGTCCGTTCCGTCGCCGGACTCAACCTGAATTCAGGCAAACGTGTCATCACCACCACACAGTATCTCAAACTCATAGAGCAAAAGAATCCCACAATTTGCTACACAAAAAAACTGAAGGCCACAGAATGCTCAGTTTGCTTATCAGATTTTGAGGAAGGTGACAAGATTAGGCAGCTGAAATGTAAGCACACATTTCACCAGGGTTGCCTGGACAAGTGGCTGCAAGAGTATAGGGCCACGTGTCCACTTTGCAGGACGAAGGTGTTGCCGGACGATGTTGTGGCTAGTTATCATCGGCTGAGAAATCAGGTACAATACGACGGCAGCGATGCGGAGTTGATTTTCTTGTTATCTTCGTTGCAGGGGAATACTTTACATAGATTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

159

Amino Acids

18.12

Weight (kDa)

8.98

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	70 - 114	1.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	71 - 114	5.1e-15	Ring finger domain
zf-RING_11	PF17123	71 - 99	5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	71 - 113	9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	71 - 115	2.3e-07	zinc-RING finger domain
zf-C3HC4	PF00097	72 - 113	6.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	72 - 111	1.7e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AcsI	RAATTY	2 cut(s)	17, 115
AcuI	CTGAAG	1 cut(s)	221
AcvI	CACGTG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	399
AflIII	ACRYGT	2 cut(s)	127, 326
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	285, 294
AluBI	AGCT	2 cut(s)	8, 262
AluI	AGCT	2 cut(s)	8, 262
Alw21I	GWGCWC	1 cut(s)	10
AoxI	GGCC	2 cut(s)	204, 321
ApeKI	GCWGC	3 cut(s)	259, 307, 411
ApoI	RAATTY	2 cut(s)	17, 115
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	34, 127, 257, 275
BanII	GRGCYC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	271, 294, 423
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	287, 296
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	3 cut(s)	260, 308, 412
BlsI	GCNGC	3 cut(s)	261, 309, 413
Bme1390I	CCNGG	2 cut(s)	287, 296
BmgT120I	GGNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	287, 296
BmsI	GCATC	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	287, 296
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	231, 377
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	271, 294, 423
BshFI	GGCC	2 cut(s)	206, 323
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	102, 356
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	206, 323
Bsp1286I	GDGCHC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	206, 323
BspCNI	CTCAG	2 cut(s)	230, 378
BssECI	CCNNGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	287, 296
Bst4CI	ACNGT	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	217, 386
BstF5I	GGATG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	287, 296
BstSCI	CCNGG	2 cut(s)	285, 294
BstV1I	GCAGC	3 cut(s)	271, 294, 423
BsuRI	GGCC	2 cut(s)	206, 323
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	398
CviJI	RGCY	7 cut(s)	8, 206, 262, 307, 323, 371, 385
CviKI_1	RGCY	7 cut(s)	8, 206, 262, 307, 323, 371, 385
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	217, 386
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	285, 294
EcoT38I	GRGCYC	1 cut(s)	10
FaiI	YATR	4 cut(s)	47, 161, 318, 465
Fnu4HI	GCNGC	3 cut(s)	260, 308, 412
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	260, 308, 412
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	260, 308, 412
HaeIII	GGCC	2 cut(s)	206, 323
HapII	CCGG	2 cut(s)	102, 356
HinfI	GANTC	2 cut(s)	105, 172
HpaII	CCGG	2 cut(s)	102, 356
HphI	GGTGA	4 cut(s)	34, 127, 257, 275
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	2 cut(s)	101, 410
HpyAV	CCTTC	3 cut(s)	196, 236, 340
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	127, 326
HpyCH4V	TGCA	3 cut(s)	310, 339, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	217, 386
HpySE526I	ACGT	2 cut(s)	127, 326
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	3 cut(s)	271, 294, 423
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	127, 326
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	3 cut(s)	43, 46, 432
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	17, 115, 180
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	50, 74, 95, 232
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	102, 356
MspR9I	CCNGG	2 cut(s)	287, 296
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	2 cut(s)	287, 296
MwoI	GCNNNNNNNGC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 93, 411
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	261, 309, 413
PleI	GAGTC	1 cut(s)	99
PmaCI	CACGTG	1 cut(s)	327
PmlI	CACGTG	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	285, 294
PspCI	CACGTG	1 cut(s)	327
PspGI	CCWGG	2 cut(s)	285, 294
PspPI	GGNCC	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	10
SatI	GCNGC	3 cut(s)	260, 308, 412
Sau96I	GGNCC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	287, 296
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	8 cut(s)	10, 114, 130, 247, 264, 329, 351, 399
SfaNI	GCATC	1 cut(s)	406
Sse9I	AATT	3 cut(s)	17, 115, 180
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	285, 294
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	130, 329
TasI	AATT	3 cut(s)	17, 115, 180
TfiI	GAWTC	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	3 cut(s)	259, 307, 411
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	2 cut(s)	80, 85
XapI	RAATTY	2 cut(s)	17, 115
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.