Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18630586 .. 18631092

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0199300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTTACAAAGAACCCTGAGTTCACGCTATGCATGGGACGAAAATCATCGAGTATTTTCAAAGGTCACAAACCAAGAGTGTCCTGCAAAAATTGGATGCCCTGCCCTTAATTTTCAGTCCCGAAGCTTGCCACAATCTCGTAGATGTGATTCTGAAGAAAACCCGGAAAAGGCATTGAACCAAAATAATGAGATGAAGCAGCTCCCTCTGCCTCCTCCATCATTGAAGGTTCTGAACACATGCAATACGGTGAAAGGCCTTAAGCAGGACCCTTTTCTTTTGGCTTACAAGCAGTGCACCAAAAGTAGAGGTAGTAGTTCTTTCAAACGTTTGTTTACCGGTTTTTTTACCAGAAATAAAAAAGAGAAGAAGAAAGATGCTGGGGAAATTGGGTCTGAATTTTTGAAGAGGAGCGACTCGGAGTTTTCGTTCCAGAATTCAAGAGTTGATGTTCTTCCTAGAGACAAAAGTCGGCGCCTATTGAGATCGATGAGTATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

168

Amino Acids

19.32

Weight (kDa)

10.02

Isoelectric Point (pI)

77.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	477
AclI	AACGTT	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	401, 439
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	172, 268
AflII	CTTAAG	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	63, 181, 229, 328, 409, 444
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	129, 205
AluI	AGCT	2 cut(s)	129, 205
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	459
Alw44I	GTGCAC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	259
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	401, 439
AsiGI	ACCGGT	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	273, 479
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	89, 370
BoxI	GACNNNNGTC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 268
Bse118I	RCCGGY	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	491
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	172, 268
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	207, 427
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	477
BshTI	ACCGGT	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	167, 342
BslFI	GGGAC	2 cut(s)	53, 106
BslI	CCNNNNNNNGG	2 cut(s)	172, 268
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	53, 106
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	273, 479
BspT107I	GGYRCC	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
BssMI	GATC	1 cut(s)	488
BssNI	GRCGYC	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	478
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	488
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	246
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	480
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	491
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	2 cut(s)	36, 243
CviJI	RGCY	5 cut(s)	5, 129, 205, 261, 287
CviKI_1	RGCY	5 cut(s)	5, 129, 205, 261, 287
DdeI	CTNAG	1 cut(s)	20
DinI	GGCGCC	1 cut(s)	479
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco147I	AGGCCT	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	37
EgeI	GGCGCC	1 cut(s)	479
EheI	GGCGCC	1 cut(s)	479
FaeI	CATG	2 cut(s)	39, 246
FaiI	YATR	3 cut(s)	33, 37, 244
FaqI	GGGAC	2 cut(s)	53, 106
FatI	CATG	2 cut(s)	35, 242
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	2 cut(s)	167, 342
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	39, 246
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	2 cut(s)	152, 419
HpaII	CCGG	2 cut(s)	167, 342
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	26, 300, 339
Hpy188I	TCNGA	4 cut(s)	157, 237, 400, 424
Hpy188III	TCNNGA	3 cut(s)	123, 436, 444
Hpy8I	GTNNAC	3 cut(s)	26, 300, 339
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	35, 89, 246, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	2 cut(s)	39, 246
HspAI	GCGC	1 cut(s)	478
KasI	GGCGCC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	488
LmnI	GCTCC	2 cut(s)	210, 414
LpnPI	CCDG	9 cut(s)	32, 99, 117, 180, 254, 355, 367, 369, 449
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	89, 370
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	5 cut(s)	170, 382, 385, 421, 449
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	5 cut(s)	93, 112, 390, 401, 439
Mly113I	GGCGCC	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	5 cut(s)	219, 225, 228, 305, 405
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	3 cut(s)	111, 264, 501
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	167, 342
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	2 cut(s)	39, 246
NlaIV	GGNNCC	2 cut(s)	273, 479
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	413
PluTI	GGCGCC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	273, 479
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	111, 264, 501
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	6 cut(s)	69, 131, 207, 234, 316, 334
SfaNI	GCATC	2 cut(s)	89, 370
SfoI	GGCGCC	1 cut(s)	479
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	93, 112, 390, 401, 439
SseBI	AGGCCT	1 cut(s)	261
SspDI	GGCGCC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	52, 491
TasI	AATT	5 cut(s)	93, 112, 390, 401, 439
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	111, 264, 501
Tru9I	TTAA	3 cut(s)	111, 264, 501
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	401, 439
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.