FvH4_1g22950

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016244
Physical Location & Seq
Reverse (-)
14860508 .. 14861637
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22950.t1

Sequence Viewer

Length: 603 bp
ATGACTGAGAACCCGGCGCTCCGTTGGGCCTTCATCCGCAAAGGCTACACCATCCTCACGGTCCAGCTACTCCTCACCGCCACCGTCGTGTTGGTCCGCCCAGTCACCCTCTTCTTTGTCGACACCTACGCCGGCCTCAGCCTTCTCATCGCCGACTTCGTCTTGGCCCTCGCCGGTAACTCTTTCTCAGTAAAGATGGCTACTTCTTTAATCAGGGTTCGATTGTTGTTTGACTTGATTGCAGTGGTTGTTGCTTTGCGCTTTTGCGGAAAGAAGTACCCGGTGAATTTCATTTTGATGGGGCTTTTCACTGTCTTGATTGGAGTCACTGTTGAAATGCATTGTGTTTTTACTGAAGGCTATGATTTCAGCTTCCTTGGTCCTTTTCTGTTTGCTGCTTTGACTGTTCTTATTGGGTTTAGCCTGATTCAGAGTTTCTATCCTCTGGGAAAAACCAGTCACATGATAATCACTCTTGTGGGATGCCTCATCTTCTGTGGCTACATTGTCTACGACACGGATAAGCTGATCAAGCGCCATGAGTATGATGAGTACATGTTGGCTGCAGTCCATCTATACTTGGGAGTCCAGCTATACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

201

Amino Acids

22.44

Weight (kDa)

8.32

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 10 - 194 6.5e-24 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 120, 510
AciI CCGC 4 cut(s) 37, 78, 97, 267
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 2 cut(s) 278, 554
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 1 cut(s) 335
AleI CACNNNNGTG 2 cut(s) 86, 476
AluBI AGCT 4 cut(s) 67, 372, 526, 592
AluI AGCT 4 cut(s) 67, 372, 526, 592
AoxI GGCC 3 cut(s) 27, 133, 165
ApeKI GCWGC 2 cut(s) 395, 563
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 3 cut(s) 19, 261, 537
AspS9I GGNCC 5 cut(s) 27, 61, 94, 166, 380
AsuC2I CCSGG 2 cut(s) 14, 281
AsuHPI GGTGA 3 cut(s) 67, 97, 295
AvaII GGWCC 3 cut(s) 61, 94, 380
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 382, 550
BccI CCATC 4 cut(s) 59, 190, 292, 579
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 2 cut(s) 14, 281
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 2 cut(s) 20, 538
BisI GCNGC 2 cut(s) 396, 564
BlsI GCNGC 2 cut(s) 397, 565
Bme1390I CCNGG 2 cut(s) 14, 281
Bme18I GGWCC 3 cut(s) 61, 94, 380
BmgT120I GGNCC 5 cut(s) 27, 61, 94, 166, 380
BmrFI CCNGG 2 cut(s) 14, 281
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 473
BmuI ACTGGG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 14, 281
BsaJI CCNNGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse118I RCCGGY 2 cut(s) 131, 173
Bse1I ACTGG 2 cut(s) 101, 456
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 33, 51, 488
BseMII CTCAG 2 cut(s) 151, 201
BseNI ACTGG 2 cut(s) 101, 456
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 382, 550
BshFI GGCC 3 cut(s) 29, 135, 167
BsiSI CCGG 4 cut(s) 14, 132, 174, 281
BsnI GGCC 3 cut(s) 29, 135, 167
Bsp143I GATC 1 cut(s) 528
BspACI CCGC 4 cut(s) 37, 78, 97, 267
BspANI GGCC 3 cut(s) 29, 135, 167
BspCNI CTCAG 2 cut(s) 150, 200
BspMAI CTGCAG 1 cut(s) 568
BsrFI RCCGGY 2 cut(s) 131, 173
BsrI ACTGG 2 cut(s) 101, 456
BssAI RCCGGY 2 cut(s) 131, 173
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 5 cut(s) 61, 85, 313, 331, 406
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 6, 137, 187
BstF5I GGATG 3 cut(s) 33, 51, 488
BstH2I RGCGCY 2 cut(s) 20, 538
BstHHI GCGC 3 cut(s) 19, 261, 537
BstKTI GATC 1 cut(s) 531
BstMBI GATC 1 cut(s) 528
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 12, 279
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 2 cut(s) 382, 550
BsuRI GGCC 3 cut(s) 29, 135, 167
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 3 cut(s) 33, 51, 488
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 309, 327
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 3 cut(s) 19, 261, 537
Cfr10I RCCGGY 2 cut(s) 131, 173
Cfr13I GGNCC 5 cut(s) 27, 61, 94, 166, 380
Csp6I GTAC 2 cut(s) 277, 553
CviAII CATG 3 cut(s) 463, 539, 556
CviQI GTAC 2 cut(s) 277, 553
DdeI CTNAG 3 cut(s) 6, 137, 187
DpnI GATC 1 cut(s) 530
DpnII GATC 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 61, 94, 380
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 466, 542, 559
FaiI YATR 7 cut(s) 363, 464, 540, 546, 557, 577, 595
FatI CATG 3 cut(s) 462, 538, 555
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 2 cut(s) 120, 510
Fnu4HI GCNGC 2 cut(s) 396, 564
FokI GGATG 3 cut(s) 20, 38, 495
Fsp4HI GCNGC 2 cut(s) 396, 564
GlaI GCGC 3 cut(s) 18, 260, 536
GluI GCNGC 2 cut(s) 396, 564
HaeII RGCGCY 2 cut(s) 20, 538
HaeIII GGCC 3 cut(s) 29, 135, 167
HapII CCGG 4 cut(s) 14, 132, 174, 281
HhaI GCGC 3 cut(s) 19, 261, 537
Hin1II CATG 3 cut(s) 466, 542, 559
Hin6I GCGC 3 cut(s) 17, 259, 535
HinP1I GCGC 3 cut(s) 17, 259, 535
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 3 cut(s) 324, 427, 585
HpaII CCGG 4 cut(s) 14, 132, 174, 281
HphI GGTGA 3 cut(s) 67, 97, 295
Hpy166II GTNNAC 2 cut(s) 121, 511
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 2 cut(s) 121, 511
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 40, 152, 350
HpyCH4III ACNGT 5 cut(s) 61, 85, 313, 331, 406
HpyCH4V TGCA 3 cut(s) 242, 340, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 3 cut(s) 6, 137, 187
Hsp92II CATG 3 cut(s) 466, 542, 559
HspAI GCGC 3 cut(s) 17, 259, 535
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 2 cut(s) 382, 550
LweI GCATC 1 cut(s) 473
MaeIII GTNAC 4 cut(s) 103, 176, 325, 458
MalI GATC 1 cut(s) 530
MboI GATC 1 cut(s) 528
MboII GAAGA 2 cut(s) 103, 484
MluCI AATT 1 cut(s) 286
MlyI GAGTC 2 cut(s) 333, 594
MnlI CCTC 7 cut(s) 65, 83, 119, 146, 179, 453, 497
Mph1103I ATGCAT 1 cut(s) 342
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 2 cut(s) 209, 601
MslI CAYNNNNRTG 4 cut(s) 86, 296, 476, 543
MspI CCGG 4 cut(s) 14, 132, 174, 281
MspR9I CCNGG 2 cut(s) 14, 281
MwoI GCNNNNNNNGC 1 cut(s) 532
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 2 cut(s) 14, 281
NdeII GATC 1 cut(s) 528
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 3 cut(s) 466, 542, 559
NmuCI GTSAC 3 cut(s) 103, 325, 458
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 1 cut(s) 559
OliI CACNNNNGTG 2 cut(s) 86, 476
PciI ACATGT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 427
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 397, 565
PleI GAGTC 2 cut(s) 332, 593
PpsI GAGTC 2 cut(s) 332, 593
PscI ACATGT 1 cut(s) 555
PspPI GGNCC 5 cut(s) 27, 61, 94, 166, 380
PstI CTGCAG 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 2 cut(s) 278, 554
RsaNI GTAC 2 cut(s) 277, 553
RseI CAYNNNNRTG 4 cut(s) 86, 296, 476, 543
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 209, 601
SatI GCNGC 2 cut(s) 396, 564
Sau3AI GATC 1 cut(s) 528
Sau96I GGNCC 5 cut(s) 27, 61, 94, 166, 380
SchI GAGTC 2 cut(s) 333, 594
ScrFI CCNGG 2 cut(s) 14, 281
SetI ASST 5 cut(s) 69, 128, 374, 528, 594
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 3 cut(s) 61, 94, 380
SmiMI CAYNNNNRTG 4 cut(s) 86, 296, 476, 543
Sse9I AATT 1 cut(s) 286
SsiI CCGC 4 cut(s) 37, 78, 97, 267
StyD4I CCNGG 2 cut(s) 12, 279
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 5 cut(s) 61, 85, 313, 331, 406
TaqI TCGA 2 cut(s) 120, 220
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 209, 601
Tru9I TTAA 2 cut(s) 209, 601
TscAI CASTG 3 cut(s) 249, 316, 334
TseFI GTSAC 3 cut(s) 103, 325, 458
TseI GCWGC 2 cut(s) 395, 563
Tsp45I GTSAC 3 cut(s) 103, 325, 458
TspDTI ATGAA 2 cut(s) 22, 280
TspGWI ACGGA 2 cut(s) 11, 533
TspRI CASTG 3 cut(s) 249, 316, 334
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 61, 94, 380
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmiI GTMKAC 2 cut(s) 120, 510
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.