FvH4_2g23070

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016244
Physical Location & Seq
Forward (+)
18918001 .. 18919620
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23070.t1

Sequence Viewer

Length: 729 bp
ATGGCGTCCGACCCGAAACCCGAGACGAACCTGGACCTCGAGGCCGGAGCTCCCCGCCGGCTCTACCCCTCCATGACCGAGAACCCGGCGCTCCGCTGGGTCTTCATCCGCAAAGTCTACACCACCCTCATCGTCCAGCTACTCCTCACCGCCGCCGTCGCCGCCACCGTTGCGTTGGTCCGCCCGGTCACCCTCTTCTTTGTCGACACCTACGCCGGCCTCGGCGTTCTCATCGCCGACTTCGTCTTGGCCCTCGCCGTGGTTGTTGCTTTGCGCTTTTGCGGCAAGAAGTACCCGGTGAATTTCATTTTGATGGGGCTTTTCACTGTCTTGATTGGAGTCATTGTTGGAATGCATTGTGTTTTTACTCAAGAGAAGGTGCTTTTGGGGGCTTTTGGTATAACACTTGTGATTTTCATCAGCTTGACACTCTACACATTCTGGGCTGCAAGGAGAGGCTATGATTTCAGCTTCCTTGGTCCTTTTCTGTTTGCTGCTTTGACTGTTCTTATTGGGTTTAGCCTGATTCAGATTTTCCATCCTCTGGGAAAAACCAGTCACATGATAATCACCCTTGTGGGATGCATCATCTTCTGTGGCTACATTGTCTACGACACGGATAAGCTGATCAAGCGCCATGAGTATGATGAGTACATGTTGGCTGCAGTCCAGCTATACTTGGATGCCATCAACCTCTTCATGAATTTGAGCGCAACTCTTAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

243

Amino Acids

26.91

Weight (kDa)

8.63

Isoelectric Point (pI)

24.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 34 - 236 1.4e-47 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 3 cut(s) 117, 204, 609
AciI CCGC 8 cut(s) 55, 94, 109, 150, 153, 162, 181, 282
AcsI RAATTY 2 cut(s) 301, 703
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 293, 653
AfiI CCNNNNNNNGG 2 cut(s) 259, 544
AflIII ACRYGT 1 cut(s) 654
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 7 cut(s) 50, 139, 423, 471, 625, 673, 726
AluI AGCT 7 cut(s) 50, 139, 423, 471, 625, 673, 726
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 17
Ama87I CYCGRG 2 cut(s) 20, 38
AoxI GGCC 3 cut(s) 42, 217, 249
ApeKI GCWGC 3 cut(s) 446, 494, 662
ApoI RAATTY 2 cut(s) 301, 703
AspLEI GCGC 4 cut(s) 91, 276, 636, 713
AspS9I GGNCC 4 cut(s) 34, 178, 250, 479
AsuC2I CCSGG 3 cut(s) 86, 185, 296
AsuHPI GGTGA 4 cut(s) 139, 181, 310, 562
AvaI CYCGRG 2 cut(s) 20, 38
AvaII GGWCC 3 cut(s) 34, 178, 479
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 433, 481, 649
BccI CCATC 3 cut(s) 307, 546, 695
BceAI ACGGC 2 cut(s) 140, 242
BciT130I CCWGG 1 cut(s) 32
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 3 cut(s) 86, 185, 296
BcoDI GTCTC 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 2 cut(s) 92, 637
BisI GCNGC 6 cut(s) 153, 162, 283, 447, 495, 663
BlsI GCNGC 6 cut(s) 154, 163, 284, 448, 496, 664
Bme1390I CCNGG 4 cut(s) 32, 86, 185, 296
Bme18I GGWCC 3 cut(s) 34, 178, 479
BmeT110I CYCGRG 2 cut(s) 20, 38
BmgT120I GGNCC 4 cut(s) 34, 178, 250, 479
BmrFI CCNGG 4 cut(s) 32, 86, 185, 296
BmsI GCATC 3 cut(s) 572, 594, 673
BpiI GAAGAC 1 cut(s) 94
BplI GAGNNNNNCTC 1 cut(s) 700
BpuEI CTTGAG 1 cut(s) 354
BpuMI CCSGG 3 cut(s) 86, 185, 296
BsaBI GATNNNNATC 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 220, 258, 475
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 544
Bse118I RCCGGY 2 cut(s) 57, 215
Bse1I ACTGG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 416
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 3 cut(s) 220, 258, 475
BseGI GGATG 4 cut(s) 105, 538, 587, 688
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 259, 544
BseNI ACTGG 1 cut(s) 555
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 433, 481, 649
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 44, 219, 251
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 2 cut(s) 20, 38
BsiSI CCGG 6 cut(s) 45, 58, 86, 185, 216, 296
BslI CCNNNNNNNGG 2 cut(s) 259, 544
BsmAI GTCTC 1 cut(s) 17
BsmBI CGTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 3 cut(s) 44, 219, 251
BsoBI CYCGRG 2 cut(s) 20, 38
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 627
BspACI CCGC 8 cut(s) 55, 94, 109, 150, 153, 162, 181, 282
BspANI GGCC 3 cut(s) 44, 219, 251
BspHI TCATGA 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 667
BsrFI RCCGGY 2 cut(s) 57, 215
BsrI ACTGG 1 cut(s) 555
BssAI RCCGGY 2 cut(s) 57, 215
BssECI CCNNGG 3 cut(s) 220, 258, 475
BssMI GATC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 169, 328, 505
Bst6I CTCTTC 2 cut(s) 200, 701
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 59, 217
BstDSI CCRYGG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 4 cut(s) 105, 538, 587, 688
BstH2I RGCGCY 2 cut(s) 92, 637
BstHHI GCGC 4 cut(s) 91, 276, 636, 713
BstKTI GATC 1 cut(s) 630
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 627
BstMWI GCNNNNNNNGC 5 cut(s) 158, 161, 170, 282, 631
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 658
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 4 cut(s) 30, 84, 183, 294
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 3 cut(s) 433, 481, 649
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 44, 219, 251
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 105, 538, 587, 688
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 59, 217
CciI TCATGA 1 cut(s) 699
CfoI GCGC 4 cut(s) 91, 276, 636, 713
Cfr10I RCCGGY 2 cut(s) 57, 215
Cfr13I GGNCC 4 cut(s) 34, 178, 250, 479
Csp6I GTAC 2 cut(s) 292, 652
CviAII CATG 5 cut(s) 73, 562, 638, 655, 700
CviQI GTAC 2 cut(s) 292, 652
DpnI GATC 1 cut(s) 629
DpnII GATC 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 200, 701
EarI CTCTTC 2 cut(s) 200, 701
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 34, 178, 479
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 2 cut(s) 20, 38
Eco91I GGTNACC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 475
EcoT22I ATGCAT 2 cut(s) 357, 587
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 5 cut(s) 76, 565, 641, 658, 703
FaiI YATR 9 cut(s) 74, 401, 462, 563, 639, 645, 656, 676, 701
FatI CATG 5 cut(s) 72, 561, 637, 654, 699
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 3 cut(s) 117, 204, 609
Fnu4HI GCNGC 6 cut(s) 153, 162, 283, 447, 495, 663
FokI GGATG 4 cut(s) 92, 525, 594, 695
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 6 cut(s) 153, 162, 283, 447, 495, 663
GlaI GCGC 4 cut(s) 90, 275, 635, 712
GluI GCNGC 6 cut(s) 153, 162, 283, 447, 495, 663
GsaI CCCAGC 1 cut(s) 100
HaeII RGCGCY 2 cut(s) 92, 637
HaeIII GGCC 3 cut(s) 44, 219, 251
HapII CCGG 6 cut(s) 45, 58, 86, 185, 216, 296
HhaI GCGC 4 cut(s) 91, 276, 636, 713
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 76, 565, 641, 658, 703
Hin6I GCGC 4 cut(s) 89, 274, 634, 711
HinP1I GCGC 4 cut(s) 89, 274, 634, 711
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 339, 526
HpaII CCGG 6 cut(s) 45, 58, 86, 185, 216, 296
HphI GGTGA 4 cut(s) 139, 181, 310, 562
Hpy166II GTNNAC 3 cut(s) 118, 205, 610
Hpy188I TCNGA 2 cut(s) 10, 531
Hpy188III TCNNGA 3 cut(s) 331, 371, 700
Hpy8I GTNNAC 3 cut(s) 118, 205, 610
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 3 cut(s) 169, 328, 505
HpyCH4V TGCA 4 cut(s) 355, 449, 585, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 161, 170, 282, 631
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 76, 565, 641, 658, 703
HspAI GCGC 4 cut(s) 89, 274, 634, 711
KroI GCCGGC 2 cut(s) 57, 215
KroNI GCCGGC 2 cut(s) 59, 217
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 1 cut(s) 627
LmnI GCTCC 3 cut(s) 47, 55, 96
Lsp1109I GCAGC 3 cut(s) 433, 481, 649
LweI GCATC 3 cut(s) 572, 594, 673
MaeIII GTNAC 2 cut(s) 187, 557
MalI GATC 1 cut(s) 629
MboI GATC 1 cut(s) 627
MboII GAAGA 4 cut(s) 94, 187, 583, 688
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 301, 703
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 2 cut(s) 33, 328
Mph1103I ATGCAT 2 cut(s) 357, 587
MroNI GCCGGC 2 cut(s) 57, 215
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 3 cut(s) 311, 575, 642
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 6 cut(s) 45, 58, 86, 185, 216, 296
MspR9I CCNGG 4 cut(s) 32, 86, 185, 296
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 5 cut(s) 158, 161, 170, 282, 631
NaeI GCCGGC 2 cut(s) 59, 217
NciI CCSGG 3 cut(s) 86, 185, 296
NdeII GATC 1 cut(s) 627
NgoMIV GCCGGC 2 cut(s) 57, 215
NlaIII CATG 5 cut(s) 76, 565, 641, 658, 703
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 187, 557
NsiI ATGCAT 2 cut(s) 357, 587
NspI RCATGY 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 38
PagI TCATGA 1 cut(s) 699
PciI ACATGT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 240
PctI GAATGC 1 cut(s) 357
PdiI GCCGGC 2 cut(s) 59, 217
PfeI GAWTC 1 cut(s) 526
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 6 cut(s) 154, 163, 284, 448, 496, 664
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 4 cut(s) 34, 178, 250, 479
PspXI VCTCGAGB 1 cut(s) 38
PstI CTGCAG 1 cut(s) 667
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 2 cut(s) 293, 653
RsaNI GTAC 2 cut(s) 292, 652
RseI CAYNNNNRTG 3 cut(s) 311, 575, 642
SacI GAGCTC 1 cut(s) 52
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 6 cut(s) 153, 162, 283, 447, 495, 663
Sau3AI GATC 1 cut(s) 627
Sau96I GGNCC 4 cut(s) 34, 178, 250, 479
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 4 cut(s) 32, 86, 185, 296
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 3 cut(s) 572, 594, 673
SfcI CTRYAG 1 cut(s) 663
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 3 cut(s) 34, 178, 479
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 3 cut(s) 311, 575, 642
SmlI CTYRAG 2 cut(s) 38, 369
SmoI CTYRAG 2 cut(s) 38, 369
Sse9I AATT 2 cut(s) 301, 703
SsiI CCGC 8 cut(s) 55, 94, 109, 150, 153, 162, 181, 282
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 4 cut(s) 30, 84, 183, 294
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 3 cut(s) 169, 328, 505
TaqI TCGA 2 cut(s) 39, 204
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 301, 703
TatI WGTACW 1 cut(s) 651
TauI GCSGC 3 cut(s) 155, 164, 285
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 187, 557
TseI GCWGC 3 cut(s) 446, 494, 662
Tsp45I GTSAC 2 cut(s) 187, 557
TspDTI ATGAA 5 cut(s) 94, 295, 406, 688, 716
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 3 cut(s) 34, 178, 479
XapI RAATTY 2 cut(s) 301, 703
XceI RCATGY 1 cut(s) 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 38
XmiI GTMKAC 3 cut(s) 117, 204, 609
Zsp2I ATGCAT 2 cut(s) 357, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.