Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

OG0016244

Physical Location & Seq

Genomic Coordinates Reverse (-)

78923 .. 80125

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002902.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgacgtcgaacccgaagagcgagacggacttggccttggacgccggagcgacccgccggctctacccgtccatgtttgagagcccggagctccgctgggccttcattcgcaaagtctacgccatcctcaccgtccagctactcctcacagtcgccgtcgccgccaccgtcgatttagtccgtccgattgctcacttccttgtcaaaacccgcgccggcttgggcgtcgacatcgccgtcttcgtcatggccctcgccgtgttggtggctttgagagtttacggcaagaagcacccggtgaattacctcttgattgggcttttcacagtcttaatgggactcatagtcggagtgggttgtgcttatactgaagagaaggtacttttggaggcttggggtctgaccattgtgattttcatgagcttgactatctatacattctgggctgcaaggagaggctatgatttcagcttccttggtccttttctgtttgcagctctgattgttctgcttggatttagtctgattcagatcctccatcctctggggaaaaccagtcatatgatattgggcattgtgggatgtatcatcttctgtggctacattgtctatgatacggatgagctgatcaagcgccaccagtatgatgagtacatgttggctgcaatccagctctacttggatgctatcaacctcttcctgaatttgatcacagctattgatagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

242

Amino Acids

26.93

Weight (kDa)

6.95

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22950 FvH4_2g23070 FvH4_4g33780 FvH4_6g44540
rosa_chinensis	RchiOBHm_Chr6g0290181 RchiOBHm_Chr6g0290191
rosa_laevigata	RLG00000012235
rosa_multiflora	Rmu_sc0002902.1_g000016 Rmu_sc0007437.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177270
rosa_rugosa	Rorug06G0210600
rosa_samantha	Rh6AG321200 Rh6BG328300 Rh6DG321300
rosa_wichuraiana	Rw6G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	2 cut(s)	117, 228
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	55, 94, 162, 211
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	3 cut(s)	5, 42, 225
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	381, 653
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	654
AhdI	GACNNNNNGTC	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	9 cut(s)	91, 139, 423, 471, 497, 625, 673, 716, 726
AluI	AGCT	9 cut(s)	91, 139, 423, 471, 497, 625, 673, 716, 726
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	3 cut(s)	33, 99, 249
ApeKI	GCWGC	3 cut(s)	446, 494, 662
ApoI	RAATTY	1 cut(s)	703
AspLEI	GCGC	2 cut(s)	215, 636
AspS9I	GGNCC	3 cut(s)	99, 250, 479
AsuC2I	CCSGG	2 cut(s)	86, 296
AsuHPI	GGTGA	2 cut(s)	121, 310
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	2 cut(s)	86, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	433, 506, 649
BccI	CCATC	2 cut(s)	131, 546
BceAI	ACGGC	4 cut(s)	140, 221, 242, 298
BclI	TGATCA	2 cut(s)	627, 708
BcnI	CCSGG	2 cut(s)	86, 296
BcoDI	GTCTC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	4 cut(s)	162, 447, 495, 663
BlsI	GCNGC	4 cut(s)	163, 448, 496, 664
Bme1390I	CCNGG	2 cut(s)	86, 296
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	99, 250, 479
BmrFI	CCNGG	2 cut(s)	86, 296
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	86, 296
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	3 cut(s)	5, 42, 225
BsaJI	CCNNGG	2 cut(s)	36, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	2 cut(s)	57, 215
Bse1I	ACTGG	2 cut(s)	555, 640
Bse8I	GATNNNNATC	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	36, 475
BseGI	GGATG	5 cut(s)	123, 538, 587, 625, 688
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseNI	ACTGG	2 cut(s)	555, 640
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	433, 506, 649
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	35, 101, 251
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	45, 58, 86, 216, 296
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	35, 101, 251
Bsp1286I	GDGCHC	2 cut(s)	86, 93
Bsp143I	GATC	3 cut(s)	531, 627, 708
BspACI	CCGC	4 cut(s)	55, 94, 162, 211
BspANI	GGCC	3 cut(s)	35, 101, 251
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	417
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	11
BsrFI	RCCGGY	2 cut(s)	57, 215
BsrI	ACTGG	2 cut(s)	555, 640
BssAI	RCCGGY	2 cut(s)	57, 215
BssECI	CCNNGG	2 cut(s)	36, 475
BssMI	GATC	3 cut(s)	531, 627, 708
BssNI	GRCGYC	3 cut(s)	5, 42, 225
BssT1I	CCWWGG	2 cut(s)	36, 475
Bst4CI	ACNGT	4 cut(s)	133, 151, 169, 328
Bst6I	CTCTTC	3 cut(s)	11, 366, 701
BstACI	GRCGYC	3 cut(s)	5, 42, 225
BstC8I	GCNNGC	2 cut(s)	59, 217
BstF5I	GGATG	5 cut(s)	123, 538, 587, 625, 688
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	215, 636
BstKTI	GATC	3 cut(s)	534, 630, 711
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	531, 627, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	84, 294
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	433, 506, 649
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	35, 101, 251
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	123, 538, 587, 625, 688
Cac8I	GCNNGC	2 cut(s)	59, 217
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	2 cut(s)	215, 636
Cfr10I	RCCGGY	2 cut(s)	57, 215
Cfr13I	GGNCC	3 cut(s)	99, 250, 479
CseI	GACGC	2 cut(s)	50, 214
Csp6I	GTAC	2 cut(s)	380, 652
CviAII	CATG	4 cut(s)	73, 247, 418, 655
CviQI	GTAC	2 cut(s)	380, 652
DpnI	GATC	3 cut(s)	533, 629, 710
DpnII	GATC	3 cut(s)	531, 627, 708
DraIII	CACNNNGTG	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	3 cut(s)	11, 366, 701
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	3 cut(s)	11, 366, 701
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	36, 475
Eco24I	GRGCYC	2 cut(s)	86, 93
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	36, 475
EcoT38I	GRGCYC	2 cut(s)	86, 93
ErhI	CCWWGG	2 cut(s)	36, 475
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	76, 250, 421, 658
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	4 cut(s)	72, 246, 417, 654
FauI	CCCGC	2 cut(s)	62, 218
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	2 cut(s)	627, 708
FblI	GTMKAC	2 cut(s)	117, 228
Fnu4HI	GCNGC	4 cut(s)	162, 447, 495, 663
FokI	GGATG	5 cut(s)	110, 525, 594, 632, 695
FriOI	GRGCYC	2 cut(s)	86, 93
Fsp4HI	GCNGC	4 cut(s)	162, 447, 495, 663
GlaI	GCGC	2 cut(s)	214, 635
GluI	GCNGC	4 cut(s)	162, 447, 495, 663
GsaI	CCCAGC	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	35, 101, 251
HapII	CCGG	5 cut(s)	45, 58, 86, 216, 296
HgaI	GACGC	2 cut(s)	50, 214
HhaI	GCGC	2 cut(s)	215, 636
Hin1I	GRCGYC	3 cut(s)	5, 42, 225
Hin1II	CATG	4 cut(s)	76, 250, 421, 658
Hin6I	GCGC	2 cut(s)	213, 634
HinP1I	GCGC	2 cut(s)	213, 634
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	339, 526
HpaII	CCGG	5 cut(s)	45, 58, 86, 216, 296
HphI	GGTGA	2 cut(s)	121, 310
Hpy166II	GTNNAC	3 cut(s)	118, 229, 280
Hpy188I	TCNGA	6 cut(s)	186, 350, 402, 501, 525, 531
Hpy188III	TCNNGA	3 cut(s)	310, 418, 700
Hpy8I	GTNNAC	3 cut(s)	118, 229, 280
Hpy99I	CGWCG	4 cut(s)	10, 161, 173, 230
HpyAV	CCTTC	2 cut(s)	112, 370
HpyCH4III	ACNGT	4 cut(s)	133, 151, 169, 328
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	3 cut(s)	449, 494, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	3 cut(s)	5, 42, 225
Hsp92II	CATG	4 cut(s)	76, 250, 421, 658
HspAI	GCGC	2 cut(s)	213, 634
KroI	GCCGGC	2 cut(s)	57, 215
KroNI	GCCGGC	2 cut(s)	59, 217
Ksp22I	TGATCA	2 cut(s)	627, 708
Kzo9I	GATC	3 cut(s)	531, 627, 708
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	47, 88, 96
Lsp1109I	GCAGC	3 cut(s)	433, 506, 649
LweI	GCATC	1 cut(s)	673
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	533, 629, 710
MboI	GATC	3 cut(s)	531, 627, 708
MboII	GAAGA	5 cut(s)	28, 232, 383, 583, 688
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	86, 93
MluCI	AATT	2 cut(s)	301, 703
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	137, 155, 263, 317, 382, 449, 545, 552, 704
MroNI	GCCGGC	2 cut(s)	57, 215
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	5 cut(s)	45, 58, 86, 216, 296
MspR9I	CCNGG	2 cut(s)	86, 296
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
NaeI	GCCGGC	2 cut(s)	59, 217
NciI	CCSGG	2 cut(s)	86, 296
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	3 cut(s)	531, 627, 708
NgoMIV	GCCGGC	2 cut(s)	57, 215
NlaIII	CATG	4 cut(s)	76, 250, 421, 658
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	1 cut(s)	417
PciI	ACATGT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 165, 234, 240
PdiI	GCCGGC	2 cut(s)	59, 217
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	163, 448, 496, 664
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PscI	ACATGT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	99, 250, 479
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	2 cut(s)	381, 653
RsaNI	GTAC	2 cut(s)	380, 652
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	4 cut(s)	162, 447, 495, 663
Sau3AI	GATC	3 cut(s)	531, 627, 708
Sau96I	GGNCC	3 cut(s)	99, 250, 479
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	86, 296
SduI	GDGCHC	2 cut(s)	86, 93
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	2 cut(s)	301, 703
SsiI	CCGC	4 cut(s)	55, 94, 162, 211
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	84, 294
StyI	CCWWGG	2 cut(s)	36, 475
TaaI	ACNGT	4 cut(s)	133, 151, 169, 328
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	8, 171, 228
TasI	AATT	2 cut(s)	301, 703
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseI	GCWGC	3 cut(s)	446, 494, 662
TspDTI	ATGAA	2 cut(s)	94, 406
TspGWI	ACGGA	3 cut(s)	41, 170, 632
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	658
XmiI	GTMKAC	2 cut(s)	117, 228
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.