RLG00000012235

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016244
Physical Location & Seq
Reverse (-)
16496389 .. 16497581
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012235

Sequence Viewer

Length: 729 bp
ATGACGTCGAACCCGAAGAGCGAGACGGACTTGGCCTTGGACTCCAGAGCGACCCGCCGGCTCTACCCGTCCATGGTTGAGAGCCCGGAGCTCCGCTGGGCCTTCATTCGCAAAGTCTACACCATCCTCACCGTCCAGCTACTCCTCACAGTCGCCGTCGCCGCCACCGTCGATTTAGTCCGTCCGATTGCTCACTTCCTTGTGAAAACCCGAGCCGGCTTAGGCGTCGACATCGCCGTCTTCGTCATGGCCCTCGCCGTGTTGGTGGCTTTGAGAGTTTACGGCAAGAAGCACCCGGTGAATTACCTCTTGATTGGGCTTTTCACAGTCTTGATGGGACTCATAGTCGGAGTGGGTTGTGCTTATACTGAAGAGAAGGTACTTTTGGAGGCTTGGGGTCTGACCATTGTGATTTTCATGAGCTTGACTATCTATACATTCTGGGCTGCAAGGAGAGGCTATGATTTCAGCTTCCTTGGTCCTTTTCTGTTTGCAGCTCTGATTGTTTTTCTTGGATTTAGTCTGATTCAGATCCTCCATCCTCTGGGGAAAACCAGTCATATGATATTTGGCATTGTGGGATGTATCATCTTCTGTGGCTACATTGTCTATGATACGGATGAGCTGATCAGGCGCCACCAGTATGATGAGTACCTGTTGGCTGCAATCCAGCTCTACTTGGATGCTATCAACCTCTTCCTGAATTTGATCACAGCTATTGATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

243

Amino Acids

27.13

Weight (kDa)

7.73

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 34 - 237 5.9e-46 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 2 cut(s) 117, 228
AciI CCGC 3 cut(s) 55, 94, 162
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 3 cut(s) 5, 225, 634
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 381, 653
AfiI CCNNNNNNNGG 2 cut(s) 73, 544
AhdI GACNNNNNGTC 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 8 cut(s) 91, 139, 423, 471, 497, 625, 673, 716
AluI AGCT 8 cut(s) 91, 139, 423, 471, 497, 625, 673, 716
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 3 cut(s) 33, 99, 249
ApeKI GCWGC 3 cut(s) 446, 494, 662
ApoI RAATTY 1 cut(s) 703
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 3 cut(s) 99, 250, 479
AsuC2I CCSGG 2 cut(s) 86, 296
AsuHPI GGTGA 2 cut(s) 121, 310
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 633
BanII GRGCYC 2 cut(s) 86, 93
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 3 cut(s) 433, 506, 649
BccI CCATC 3 cut(s) 131, 328, 546
BceAI ACGGC 4 cut(s) 140, 221, 242, 298
BclI TGATCA 2 cut(s) 627, 708
BcnI CCSGG 2 cut(s) 86, 296
BcoDI GTCTC 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 637
BisI GCNGC 4 cut(s) 162, 447, 495, 663
BlsI GCNGC 4 cut(s) 163, 448, 496, 664
Bme1390I CCNGG 2 cut(s) 86, 296
Bme18I GGWCC 1 cut(s) 479
BmeRI GACNNNNNGTC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 99, 250, 479
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 2 cut(s) 86, 296
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 86, 296
BsaBI GATNNNNATC 1 cut(s) 530
BsaHI GRCGYC 3 cut(s) 5, 225, 634
BsaJI CCNNGG 3 cut(s) 36, 72, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 544
Bse118I RCCGGY 2 cut(s) 57, 215
Bse1I ACTGG 2 cut(s) 555, 640
Bse8I GATNNNNATC 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 36, 72, 475
BseGI GGATG 5 cut(s) 123, 538, 587, 625, 688
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 73, 544
BseNI ACTGG 2 cut(s) 555, 640
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 433, 506, 649
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 35, 101, 251
BshNI GGYRCC 1 cut(s) 633
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 4 cut(s) 58, 86, 216, 296
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 73, 544
BsmAI GTCTC 1 cut(s) 17
BsmBI CGTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 3 cut(s) 35, 101, 251
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 86, 93
Bsp143I GATC 3 cut(s) 531, 627, 708
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 3 cut(s) 55, 94, 162
BspANI GGCC 3 cut(s) 35, 101, 251
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 635
BspPI GGATC 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 633
BsrFI RCCGGY 2 cut(s) 57, 215
BsrI ACTGG 2 cut(s) 555, 640
BssAI RCCGGY 2 cut(s) 57, 215
BssECI CCNNGG 3 cut(s) 36, 72, 475
BssMI GATC 3 cut(s) 531, 627, 708
BssNI GRCGYC 3 cut(s) 5, 225, 634
BssT1I CCWWGG 3 cut(s) 36, 72, 475
Bst4CI ACNGT 4 cut(s) 133, 151, 169, 328
Bst6I CTCTTC 3 cut(s) 11, 366, 701
BstACI GRCGYC 3 cut(s) 5, 225, 634
BstC8I GCNNGC 2 cut(s) 59, 217
BstDEI CTNAG 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 5 cut(s) 123, 538, 587, 625, 688
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 3 cut(s) 534, 630, 711
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 531, 627, 708
BstMWI GCNNNNNNNGC 2 cut(s) 161, 631
BstSCI CCNGG 2 cut(s) 84, 294
BstV1I GCAGC 3 cut(s) 433, 506, 649
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 3 cut(s) 35, 101, 251
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 5 cut(s) 123, 538, 587, 625, 688
Cac8I GCNNGC 2 cut(s) 59, 217
CciI TCATGA 1 cut(s) 417
CfoI GCGC 1 cut(s) 636
Cfr10I RCCGGY 2 cut(s) 57, 215
Cfr13I GGNCC 3 cut(s) 99, 250, 479
CseI GACGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 380, 652
CviAII CATG 3 cut(s) 73, 247, 418
CviQI GTAC 2 cut(s) 380, 652
DdeI CTNAG 1 cut(s) 220
DinI GGCGCC 1 cut(s) 635
DpnI GATC 3 cut(s) 533, 629, 710
DpnII GATC 3 cut(s) 531, 627, 708
DraIII CACNNNGTG 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 236
DriI GACNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 3 cut(s) 11, 366, 701
Eam1105I GACNNNNNGTC 1 cut(s) 344
EarI CTCTTC 3 cut(s) 11, 366, 701
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 36, 72, 475
Eco24I GRGCYC 2 cut(s) 86, 93
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 36, 72, 475
EcoT38I GRGCYC 2 cut(s) 86, 93
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
ErhI CCWWGG 3 cut(s) 36, 72, 475
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 3 cut(s) 76, 250, 421
FaqI GGGAC 1 cut(s) 351
FatI CATG 3 cut(s) 72, 246, 417
FauI CCCGC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 561
FbaI TGATCA 2 cut(s) 627, 708
FblI GTMKAC 2 cut(s) 117, 228
Fnu4HI GCNGC 4 cut(s) 162, 447, 495, 663
FokI GGATG 5 cut(s) 110, 525, 594, 632, 695
FriOI GRGCYC 2 cut(s) 86, 93
Fsp4HI GCNGC 4 cut(s) 162, 447, 495, 663
GlaI GCGC 1 cut(s) 635
GluI GCNGC 4 cut(s) 162, 447, 495, 663
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 3 cut(s) 35, 101, 251
HapII CCGG 4 cut(s) 58, 86, 216, 296
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 636
Hin1I GRCGYC 3 cut(s) 5, 225, 634
Hin1II CATG 3 cut(s) 76, 250, 421
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 3 cut(s) 41, 339, 526
HpaII CCGG 4 cut(s) 58, 86, 216, 296
HphI GGTGA 2 cut(s) 121, 310
Hpy166II GTNNAC 3 cut(s) 118, 229, 280
Hpy188I TCNGA 6 cut(s) 186, 350, 402, 501, 525, 531
Hpy188III TCNNGA 5 cut(s) 45, 310, 331, 418, 700
Hpy8I GTNNAC 3 cut(s) 118, 229, 280
Hpy99I CGWCG 4 cut(s) 10, 161, 173, 230
HpyAV CCTTC 2 cut(s) 112, 370
HpyCH4III ACNGT 4 cut(s) 133, 151, 169, 328
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 449, 494, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 631
HpyF3I CTNAG 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 3 cut(s) 5, 225, 634
Hsp92II CATG 3 cut(s) 76, 250, 421
HspAI GCGC 1 cut(s) 634
KasI GGCGCC 1 cut(s) 633
KroI GCCGGC 2 cut(s) 57, 215
KroNI GCCGGC 2 cut(s) 59, 217
Ksp22I TGATCA 2 cut(s) 627, 708
Kzo9I GATC 3 cut(s) 531, 627, 708
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 2 cut(s) 88, 96
Lsp1109I GCAGC 3 cut(s) 433, 506, 649
LweI GCATC 1 cut(s) 673
MaeII ACGT 1 cut(s) 5
MalI GATC 3 cut(s) 533, 629, 710
MboI GATC 3 cut(s) 531, 627, 708
MboII GAAGA 5 cut(s) 28, 232, 383, 583, 688
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 2 cut(s) 86, 93
MluCI AATT 2 cut(s) 301, 703
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 2 cut(s) 35, 333
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 9 cut(s) 137, 155, 263, 317, 382, 449, 545, 552, 704
MroNI GCCGGC 2 cut(s) 57, 215
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 4 cut(s) 58, 86, 216, 296
MspR9I CCNGG 2 cut(s) 86, 296
MwoI GCNNNNNNNGC 2 cut(s) 161, 631
NaeI GCCGGC 2 cut(s) 59, 217
NarI GGCGCC 1 cut(s) 634
NciI CCSGG 2 cut(s) 86, 296
NcoI CCATGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 561
NdeII GATC 3 cut(s) 531, 627, 708
NgoMIV GCCGGC 2 cut(s) 57, 215
NlaIII CATG 3 cut(s) 76, 250, 421
NlaIV GGNNCC 1 cut(s) 635
PagI TCATGA 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 165, 234, 240
PdiI GCCGGC 2 cut(s) 59, 217
PfeI GAWTC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 4 cut(s) 163, 448, 496, 664
PleI GAGTC 2 cut(s) 35, 333
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 2 cut(s) 35, 333
Psp124BI GAGCTC 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 3 cut(s) 99, 250, 479
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 2 cut(s) 381, 653
RsaNI GTAC 2 cut(s) 380, 652
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 4 cut(s) 162, 447, 495, 663
Sau3AI GATC 3 cut(s) 531, 627, 708
Sau96I GGNCC 3 cut(s) 99, 250, 479
SchI GAGTC 2 cut(s) 35, 333
ScrFI CCNGG 2 cut(s) 86, 296
SduI GDGCHC 2 cut(s) 86, 93
SfaNI GCATC 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 635
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 642
Sse9I AATT 2 cut(s) 301, 703
SsiI CCGC 3 cut(s) 55, 94, 162
SspDI GGCGCC 1 cut(s) 633
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 84, 294
StyI CCWWGG 3 cut(s) 36, 72, 475
TaaI ACNGT 4 cut(s) 133, 151, 169, 328
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 8, 171, 228
TasI AATT 2 cut(s) 301, 703
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 526
TseI GCWGC 3 cut(s) 446, 494, 662
TspDTI ATGAA 2 cut(s) 94, 406
TspGWI ACGGA 3 cut(s) 41, 170, 632
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 703
XmiI GTMKAC 2 cut(s) 117, 228
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.