FvH4_4g33780

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016244
Physical Location & Seq
Reverse (-)
31868645 .. 31869359
715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33780.t1

Sequence Viewer

Length: 387 bp
ATGACCGAGAACCCGGCGCTCCGCTGGGCCTTCATCCGCAAAGTTTACACCATCCTCACGGTCCAACTACTCCTCACCGCCGCCGTCGCCGCCACGGTCGCGTTGGTCCGCTCGGTCACCCTCTTCTTTGTCGACACCTACGCCGGCCTCAGCCTTCTCATCGCCGATTTCGTCTTGGCCCTCGCTGTGGTAGTTGTTTTGCGCTTTTGCGGCAAGTACCCAGTGAATTTCATTTGGATGGGGCTTTTCACTGTCTTGATTGGAGTCATTGTTGGAATGCATTGTGTTTTTACTAAAGAGAAGGTGTTTTTGGAGGCTTTTGGTATAACACTTGTGACTTTCATCAGCTTGACACTACACATTCTGGGCTGCAAGGAGAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

9.22

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 10 - 124 4.9e-15 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 101
AciI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
AcsI RAATTY 1 cut(s) 226
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
AoxI GGCC 3 cut(s) 27, 145, 177
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 2 cut(s) 19, 204
AspS9I GGNCC 4 cut(s) 27, 61, 106, 178
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 67, 109
AvaII GGWCC 2 cut(s) 61, 106
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 59, 232
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 4 cut(s) 81, 90, 211, 370
BlsI GCNGC 4 cut(s) 82, 91, 212, 371
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 61, 106
BmgT120I GGNCC 4 cut(s) 27, 61, 106, 178
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 3 cut(s) 33, 51, 243
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 29, 147, 179
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 14, 144
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 29, 147, 179
BspACI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
BspANI GGCC 3 cut(s) 29, 147, 179
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 61, 97, 253
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 3 cut(s) 33, 51, 243
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 204
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 29, 147, 179
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 3 cut(s) 33, 51, 243
BtsIMutI CAGTG 2 cut(s) 228, 249
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 2 cut(s) 19, 204
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 4 cut(s) 27, 61, 106, 178
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 9 cut(s) 29, 147, 153, 179, 244, 317, 348, 369, 382
CviKI_1 RGCY 9 cut(s) 29, 147, 153, 179, 244, 317, 348, 369, 382
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 61, 106
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 282
FaiI YATR 2 cut(s) 326, 385
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 81, 90, 211, 370
FokI GGATG 3 cut(s) 20, 38, 250
Fsp4HI GCNGC 4 cut(s) 81, 90, 211, 370
GlaI GCGC 2 cut(s) 18, 203
GluI GCNGC 4 cut(s) 81, 90, 211, 370
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 29, 147, 179
HapII CCGG 2 cut(s) 14, 144
HhaI GCGC 2 cut(s) 19, 204
Hin6I GCGC 2 cut(s) 17, 202
HinP1I GCGC 2 cut(s) 17, 202
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 264
HpaII CCGG 2 cut(s) 14, 144
HphI GGTGA 2 cut(s) 67, 109
Hpy166II GTNNAC 2 cut(s) 46, 133
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 46, 133
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 40, 164, 295
HpyCH4III ACNGT 3 cut(s) 61, 97, 253
HpyCH4V TGCA 2 cut(s) 280, 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
HpyF3I CTNAG 1 cut(s) 149
HspAI GCGC 2 cut(s) 17, 202
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 10, 27, 157, 234, 350
Lsp1109I GCAGC 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 115, 334
MbiI CCGCTC 1 cut(s) 111
MboII GAAGA 1 cut(s) 115
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 88, 253
MnlI CCTC 7 cut(s) 65, 83, 131, 158, 191, 307, 372
Mph1103I ATGCAT 1 cut(s) 282
MroNI GCCGGC 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 14, 144
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 282
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 115, 334
NsiI ATGCAT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 145
PkrI GCNGC 4 cut(s) 82, 91, 212, 371
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspEI GGTNACC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 24
PspPI GGNCC 4 cut(s) 27, 61, 106, 178
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 4 cut(s) 81, 90, 211, 370
Sau96I GGNCC 4 cut(s) 27, 61, 106, 178
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 140, 306, 350
SinI GGWCC 2 cut(s) 61, 106
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 1 cut(s) 226
SsiI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 61, 97, 253
TaqI TCGA 1 cut(s) 132
TaqII GACCGA 2 cut(s) 20, 103
TasI AATT 1 cut(s) 226
TauI GCSGC 3 cut(s) 83, 92, 213
TscAI CASTG 2 cut(s) 228, 256
TseFI GTSAC 2 cut(s) 115, 334
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 2 cut(s) 115, 334
TspDTI ATGAA 3 cut(s) 22, 220, 331
TspRI CASTG 2 cut(s) 228, 256
VpaK11BI GGWCC 2 cut(s) 61, 106
XapI RAATTY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.