Rorug06G0210600

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016244
Physical Location & Seq
Forward (+)
33509550 .. 33511347
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0210600.1

Sequence Viewer

Length: 699 bp
ATGAGAGGTATTGACGGCACTTCTGCTAGAAAAAGAAGAAACAGGAGTTTATCCCCCCCGGCCTCTAATCCTATTCATCACTTGAAAACATCAAAAACTTCATCATCAAGTTCAGCAGCATCAAGAAGACCACCATCAAAACTGATGAATGCTAATATTGATAATCTTCCCGAACATGTTTTGGTTGAAATTCTCTGTCGACTTCCTTGCTATAAATTCGTCTCTCAATGCAAGTGGGTGTCCAAACGTTGGTGCACTCTCATGTCAAATCCTTCTTTCATTGGGGTGGAATTCCTTAACAAAACTTCATCATTGTCCAAGCCACTAACTCCTTTGTTCAGAAGACTGATGAGTATTTACAGTTTGGAGAAAGAGCCAATTGTGGTTGGTACATATAATGACTTGGTTCTGTGCTGTGCAACCGAGTATCAACAACGTGATTACTTCATCTGCAATCCATACACAATCCAATGGGCTGAACTTCCTCCCCCGCCTCAAGTATACGAGTACACACCCGCGGGATTCATCTGCGATCTTCCTTACTATAACTATAAGACAAGTGATTGGAAATCAGGAGATACCATCAAGCTTAATGCGGGGTATAGGTGCAGGGTTGTGAGAATTATTTTTCCTCCTGATCAGGAATTTTCCTGCACATTGGGGGTGCAGATCTTCTCTGAAAGTACTAGAATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

232

Amino Acids

26.5

Weight (kDa)

9.23

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 2 cut(s) 199, 501
AccII CGCG 1 cut(s) 518
AciI CCGC 4 cut(s) 491, 516, 518, 596
AclI AACGTT 1 cut(s) 247
AcsI RAATTY 4 cut(s) 189, 215, 290, 644
AfaI GTAC 3 cut(s) 391, 509, 685
AfiI CCNNNNNNNGG 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 85, 188
AluBI AGCT 1 cut(s) 589
AluI AGCT 1 cut(s) 589
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 253
AoxI GGCC 2 cut(s) 60, 693
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 4 cut(s) 189, 215, 290, 644
AsuC2I CCSGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 133, 349
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 142, 590
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 3 cut(s) 27, 687, 697
BglII AGATCT 1 cut(s) 669
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 133, 349
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 57, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 57, 516
BseLI CCNNNNNNNGG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 3 cut(s) 628, 637, 686
Bsh1236I CGCG 1 cut(s) 518
BshFI GGCC 2 cut(s) 62, 695
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 2 cut(s) 62, 695
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 532, 637, 669
BspACI CCGC 4 cut(s) 491, 516, 518, 596
BspANI GGCC 2 cut(s) 62, 695
BspFNI CGCG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 57, 516
BssMI GATC 3 cut(s) 532, 637, 669
BssNAI GTATAC 1 cut(s) 502
Bst1107I GTATAC 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 518
BstKTI GATC 3 cut(s) 535, 640, 672
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 532, 637, 669
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 1 cut(s) 518
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 133, 349
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
BstZ17I GTATAC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 62, 695
BtgI CCRYGG 1 cut(s) 516
Cfr42I CCGCGG 1 cut(s) 519
Csp6I GTAC 3 cut(s) 390, 508, 684
CspCI CAANNNNNGTGG 2 cut(s) 215, 250
CviAII CATG 2 cut(s) 176, 262
CviJI RGCY 6 cut(s) 62, 322, 376, 476, 589, 695
CviKI_1 RGCY 6 cut(s) 62, 322, 376, 476, 589, 695
CviQI GTAC 3 cut(s) 390, 508, 684
DpnI GATC 3 cut(s) 534, 639, 671
DpnII GATC 3 cut(s) 532, 637, 669
EcoRI GAATTC 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 2 cut(s) 179, 265
FatI CATG 2 cut(s) 175, 261
FauI CCCGC 4 cut(s) 498, 511, 523, 589
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 2 cut(s) 199, 501
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 3 cut(s) 27, 687, 697
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 62, 695
HapII CCGG 1 cut(s) 59
Hin1II CATG 2 cut(s) 179, 265
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 1 cut(s) 522
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 4 cut(s) 200, 255, 502, 510
Hpy188I TCNGA 2 cut(s) 341, 679
Hpy188III TCNNGA 5 cut(s) 123, 170, 573, 635, 641
Hpy8I GTNNAC 4 cut(s) 200, 255, 502, 510
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 247, 436
HpyCH4V TGCA 7 cut(s) 231, 255, 419, 453, 609, 654, 667
HpySE526I ACGT 2 cut(s) 247, 436
Hsp92II CATG 2 cut(s) 179, 265
Ksp22I TGATCA 1 cut(s) 637
KspI CCGCGG 1 cut(s) 519
Kzo9I GATC 3 cut(s) 532, 637, 669
LpnPI CCDG 7 cut(s) 28, 72, 558, 595, 626, 648, 664
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 128
MaeI CTAG 3 cut(s) 27, 687, 697
MaeII ACGT 2 cut(s) 247, 436
MalI GATC 3 cut(s) 534, 639, 671
MboI GATC 3 cut(s) 532, 637, 669
MboII GAAGA 6 cut(s) 48, 138, 158, 354, 527, 664
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 6 cut(s) 189, 215, 290, 378, 621, 644
MnlI CCTC 4 cut(s) 73, 495, 504, 642
MseI TTAA 2 cut(s) 297, 591
MslI CAYNNNNRTG 2 cut(s) 260, 284
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 154
MvnI CGCG 1 cut(s) 518
NciI CCSGG 1 cut(s) 59
NdeII GATC 3 cut(s) 532, 637, 669
NlaIII CATG 2 cut(s) 179, 265
NspI RCATGY 1 cut(s) 179
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 522
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 1 cut(s) 118
PscI ACATGT 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 247
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 3 cut(s) 391, 509, 685
RsaNI GTAC 3 cut(s) 390, 508, 684
RseI CAYNNNNRTG 2 cut(s) 260, 284
SacII CCGCGG 1 cut(s) 519
SalI GTCGAC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 297, 591
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 532, 637, 669
ScaI AGTACT 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 257
SetI ASST 5 cut(s) 10, 250, 439, 591, 608
SfaNI GCATC 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 519
SgrBI CCGCGG 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 260, 284
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 6 cut(s) 189, 215, 290, 378, 621, 644
SsiI CCGC 4 cut(s) 491, 516, 518, 596
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 27, 687, 697
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 250, 439
TaqI TCGA 1 cut(s) 199
TasI AATT 6 cut(s) 189, 215, 290, 378, 621, 644
TatI WGTACW 2 cut(s) 507, 683
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 2 cut(s) 297, 591
Tru9I TTAA 2 cut(s) 297, 591
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 7 cut(s) 65, 90, 161, 268, 297, 436, 514
Van91I CCANNNNNTGG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 253
XapI RAATTY 4 cut(s) 189, 215, 290, 644
XceI RCATGY 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 199, 501
XspI CTAG 3 cut(s) 27, 687, 697
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.