FvH4_6g44540

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016244
Physical Location & Seq
Reverse (-)
34298580 .. 34299291
712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44540.t1

Sequence Viewer

Length: 387 bp
ATGACCGAGAACCCGGCGCTCCGCTGGGCCTTCATCCGCAAAGTCTACACCATCCTCACGGTCCAACTACTCCTCACCGCCGCCGTCGCCGCCACGGTCGCGTTGGTCCGCTCGGTCACCCTCTTCTTTGTCGACACCTACGTCGGCCTCAGCCTTCTCATCGTCGATTTCGTCTTGGCCCTCGCCGTGGTAGTTGTTTTGCGCTTTTGCGGCAAGTACCCAGTGAATTTCATTTTGATGGGGCTTTTCACTGTCTTGATTGGAGTCATTGTTGGAATGCATTGTGTTTTTACTAAAGAGAAGGTGTTTTTGGAGGCTTTTGGTATAACACTTGTGACTTTCATCAGCTTGACACTACACATTCTGGGCTGCAAGGAGAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

129

Amino Acids

14.18

Weight (kDa)

9.22

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 10 - 124 1.3e-15 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 2 cut(s) 45, 132
AccII CGCG 1 cut(s) 101
AciI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
AcsI RAATTY 1 cut(s) 226
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
AoxI GGCC 3 cut(s) 27, 145, 177
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 2 cut(s) 19, 204
AspS9I GGNCC 4 cut(s) 27, 61, 106, 178
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 67, 109
AvaII GGWCC 2 cut(s) 61, 106
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 59, 232
BceAI ACGGC 2 cut(s) 68, 170
BcnI CCSGG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 4 cut(s) 81, 90, 211, 370
BlsI GCNGC 4 cut(s) 82, 91, 212, 371
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 61, 106
BmgT120I GGNCC 4 cut(s) 27, 61, 106, 178
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 93, 186
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 93, 186
BseGI GGATG 2 cut(s) 33, 51
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 29, 147, 179
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 29, 147, 179
BspACI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
BspANI GGCC 3 cut(s) 29, 147, 179
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 93, 186
Bst4CI ACNGT 3 cut(s) 61, 97, 253
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 2 cut(s) 93, 186
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 2 cut(s) 33, 51
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 204
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 29, 147, 179
BtgI CCRYGG 2 cut(s) 93, 186
BtsCI GGATG 2 cut(s) 33, 51
BtsIMutI CAGTG 2 cut(s) 228, 249
CfoI GCGC 2 cut(s) 19, 204
Cfr13I GGNCC 4 cut(s) 27, 61, 106, 178
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 9 cut(s) 29, 147, 153, 179, 244, 317, 348, 369, 382
CviKI_1 RGCY 9 cut(s) 29, 147, 153, 179, 244, 317, 348, 369, 382
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 149
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 61, 106
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 282
FaiI YATR 2 cut(s) 326, 385
FblI GTMKAC 2 cut(s) 45, 132
Fnu4HI GCNGC 4 cut(s) 81, 90, 211, 370
FokI GGATG 2 cut(s) 20, 38
Fsp4HI GCNGC 4 cut(s) 81, 90, 211, 370
GlaI GCGC 2 cut(s) 18, 203
GluI GCNGC 4 cut(s) 81, 90, 211, 370
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 29, 147, 179
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 19, 204
Hin6I GCGC 2 cut(s) 17, 202
HinP1I GCGC 2 cut(s) 17, 202
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 67, 109
Hpy166II GTNNAC 2 cut(s) 46, 133
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 46, 133
Hpy99I CGWCG 3 cut(s) 89, 146, 167
HpyAV CCTTC 3 cut(s) 40, 164, 295
HpyCH4III ACNGT 3 cut(s) 61, 97, 253
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 280, 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 17, 202
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 10, 27, 234, 350
Lsp1109I GCAGC 1 cut(s) 356
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 115, 334
MbiI CCGCTC 1 cut(s) 111
MboII GAAGA 1 cut(s) 115
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 88, 253
MnlI CCTC 7 cut(s) 65, 83, 131, 158, 191, 307, 372
Mph1103I ATGCAT 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 282
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 86, 89, 98, 210
NciI CCSGG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 115, 334
NsiI ATGCAT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 168
PctI GAATGC 1 cut(s) 282
PkrI GCNGC 4 cut(s) 82, 91, 212, 371
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspEI GGTNACC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 24
PspPI GGNCC 4 cut(s) 27, 61, 106, 178
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 4 cut(s) 81, 90, 211, 370
Sau96I GGNCC 4 cut(s) 27, 61, 106, 178
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 14
SetI ASST 4 cut(s) 140, 144, 306, 350
SinI GGWCC 2 cut(s) 61, 106
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 1 cut(s) 226
SsiI CCGC 7 cut(s) 22, 37, 78, 81, 90, 109, 210
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 61, 97, 253
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 132, 165
TaqII GACCGA 2 cut(s) 20, 103
TasI AATT 1 cut(s) 226
TauI GCSGC 3 cut(s) 83, 92, 213
TscAI CASTG 2 cut(s) 228, 256
TseFI GTSAC 2 cut(s) 115, 334
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 2 cut(s) 115, 334
TspDTI ATGAA 3 cut(s) 22, 220, 331
TspRI CASTG 2 cut(s) 228, 256
VpaK11BI GGWCC 2 cut(s) 61, 106
XapI RAATTY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 2 cut(s) 45, 132
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.