FvH4_1g24050

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
15913115 .. 15916905
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24050.t1

Sequence Viewer

Length: 1905 bp
ATGAGAGGATCAATGGCTTCCCCACGCGCCGTTGAAGCTAGGCACCGGCTATCTGCATCATTAAGAAAAGTACTGAAAAGTAAAGCAAACGATTCGGATCAGAAGCCTTTCCACTTATCTATCCAAGAAAGAAGTTCAAGATACAAGCTTCCTCTGTTGAGATTTGTGCTGCTAATCACCATCTGTGGTACTTTTGTAACACTCCTGTACTCTCCAGACGTTTACAACAATAACCTTCCAACACATTCTGTTCCTCGGTGGATATGGGGTGGTTCAGATTCTCGATATGAAACAAATATAGACATTAACTGGGATGATGTCATGAAAGTGATGGGGAGGTTGGCTGACAGGAATACATATCAAGGAATTGGCCTATTAAACTTCAACACAAGCGAAATCAAACAGTGGAATCAAATTGTTCCTGAAGCCATGAATGTTGTTCTGCACCTAGACTATGCTGCAGAGAATGTAACTTGGGAATCTTTATATCCAGAATGGATAGATGAGGAGGAAGAAGAAGGAATTCCACTCTGCCCATCTCTGCCAAAGCTCAAAGCAATTGGTAGACGGCTTGACCTCATAGCTGTTAAACTTCCTTGTCGGAAAGAGCTAGCAAATTGGTCTAGAGATGTTGCTAGGTTGCATTTGCAGCTTGCTGCTGCTGGACTTGCAGCGTCTTCCAAAGGGTATCGCCATGTGCATTTGCTTTTCGTCACCGACTGCTTCCCTATTCCAAATCTGTTCAAATGCAAAGAGCTTGTGGTGAGGGAGGGGAATGTATGGCTATACAAGCCAAACCTCAATGTGCTTAGAGAAAAATTGCAGCTCCCAGTTGGTTCCTGTGAACTTGCCCTTCCTTTCAGAGGGAAAGGGCTGGTCTACTCTGGCAATGCACGCCGAGAAGCGTATGCAACAATTCTCCATTCAGCTGATGTTTATGTTTGTGGAGCCATATCTGCCGCACAAAGCATTCGAATGGCAGGGTCTACTCGAGACCTTGTGATACTTGTTGATGAAACCATTAGTGGTTACCATAGGAGTGGACTGCAGGCAGCAGGGTGGATAGTAAAGACTATTCAAAGGATCAGGAACCCGAAAGCTGAGAAAGATGCATACAATGAATGGAACTACAGCAAGTTCCGGTTGTGGCAGCTGACAGAATATGACAAGATCATTTTCATTGATGCTGATTTGCTTATACTCAAGAACATTGATATCTTATTTTCGATGCCAGAAATTTCTGCCACAGGGAATGATGCCACACTTTTTAACTCTGGGGTGATGGTAATCGAGCCATCAAATTGCACATTTCACCTGCTTATGGATCACATTAATGAGATAGAGTCCTACAATGGTGGTGACCAGGGCTACTTGAATGAAATTTTTACATGGTGGCATAGAATACCTAGACACATGAATTTCTTAAAGCATTTCTGGCAAGGTGATGAGGAGGAAATGAAGCAAAAGAAGACCTGGCTTTTTGGAGCTGAACCTCCAGTTCTTTATGTCCTTCACTACCTAGGAATGAAGCCATGGTTGTGCTTTCGCGACTACGATTGTAACTGGAATTCTGATATATTTCAAGAGTTTGCAAGTGATGTTGCTCACGCAAGTTGGTGGAAGATTCATGATGCAATGCCTGAGCTGCTGCAGCAGTTTTGCTTTTTGAGGACGAAGCAGAAGGCACAACTGGAATGGGACAGAAGGGAAGCCGAGAAAGCGAACTTCACAGATGGACATTGGAAGATCAAAATCAAAGACCGGCGATTGAAAAGATGTGTAGACAATGTGTGTTCTTGGAAGGGCATGTTGAAGCATTGGGGAGAAACAAACTGGACTGATGATCAGGTTGTGTACAGTCCAACTCTTCCTGCAATTACCGCAACTTCTACCGCCGGTGTTTGA

Protein Analysis

635

Amino Acids

73.15

Weight (kDa)

7.88

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 307 - 411 6.2e-09 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1323
Acc36I ACCTGC 1 cut(s) 1323
AccB1I GGYRCC 1 cut(s) 42
AccI GTMKAC 4 cut(s) 565, 879, 986, 1782
AccII CGCG 2 cut(s) 27, 1548
AciI CCGC 3 cut(s) 960, 1881, 1893
AclWI GGATC 4 cut(s) 16, 105, 1091, 1332
AcsI RAATTY 5 cut(s) 522, 1236, 1380, 1417, 1567
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 4 cut(s) 72, 190, 209, 1856
AfiI CCNNNNNNNGG 2 cut(s) 863, 1321
AgsI TTSAA 9 cut(s) 35, 138, 385, 745, 1079, 1375, 1583, 1771, 1813
AjnI CCWGG 2 cut(s) 1362, 1472
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 4 cut(s) 16, 105, 1091, 1332
Ama87I CYCGRG 1 cut(s) 990
AoxI GGCC 1 cut(s) 370
ApoI RAATTY 5 cut(s) 522, 1236, 1380, 1417, 1567
AseI ATTAAT 1 cut(s) 1332
Asp700I GAANNNNTTC 2 cut(s) 107, 522
AspA2I CCTAGG 1 cut(s) 1519
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 7 cut(s) 169, 706, 775, 1291, 1304, 1370, 1454
AsuII TTCGAA 1 cut(s) 973
AsuNHI GCTAGC 1 cut(s) 610
AvaI CYCGRG 1 cut(s) 990
AvrII CCTAGG 1 cut(s) 1519
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanI GGYRCC 1 cut(s) 42
BbsI GAAGAC 2 cut(s) 669, 1475
BccI CCATC 6 cut(s) 188, 325, 544, 1276, 1303, 1727
BceAI ACGGC 2 cut(s) 14, 584
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 1364, 1474
BclI TGATCA 1 cut(s) 1843
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 7 cut(s) 39, 449, 611, 624, 636, 1407, 1520
BfmI CTRYAG 4 cut(s) 459, 1046, 1129, 1649
BfuAI ACCTGC 1 cut(s) 1323
BlnI CCTAGG 1 cut(s) 1519
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 1364, 1474
BmeT110I CYCGRG 1 cut(s) 990
BmiI GGNNCC 4 cut(s) 44, 838, 949, 1091
BmrFI CCNGG 2 cut(s) 1364, 1474
BmrI ACTGGG 2 cut(s) 319, 824
BmsI GCATC 6 cut(s) 65, 1099, 1174, 1218, 1246, 1621
BmtI GCTAGC 1 cut(s) 614
BmuI ACTGGG 2 cut(s) 319, 824
BpiI GAAGAC 2 cut(s) 669, 1475
BpmI CTGGAG 2 cut(s) 198, 1479
Bpu10I CCTNAGC 1 cut(s) 1641
Bpu14I TTCGAA 1 cut(s) 973
BpuEI CTTGAG 1 cut(s) 1187
BsaBI GATNNNNATC 3 cut(s) 96, 1286, 1751
BsaI GGTCTC 1 cut(s) 987
BsaJI CCNNGG 4 cut(s) 254, 1363, 1519, 1532
BsaWI WCCGGW 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 1321
Bse118I RCCGGY 3 cut(s) 45, 1761, 1895
Bse1I ACTGG 6 cut(s) 314, 830, 1496, 1568, 1695, 1838
Bse3DI GCAATG 2 cut(s) 895, 1641
Bse8I GATNNNNATC 3 cut(s) 96, 1286, 1751
BseBI CCWGG 2 cut(s) 1364, 1474
BseDI CCNNGG 4 cut(s) 254, 1363, 1519, 1532
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 3 cut(s) 96, 1286, 1751
BseLI CCNNNNNNNGG 2 cut(s) 863, 1321
BseMI GCAATG 2 cut(s) 895, 1641
BseMII CTCAG 2 cut(s) 1092, 1632
BseNI ACTGG 6 cut(s) 314, 830, 1496, 1568, 1695, 1838
BseRI GAGGAG 2 cut(s) 521, 1463
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 2 cut(s) 27, 1548
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 990
BsiSI CCGG 4 cut(s) 46, 1141, 1762, 1896
BslFI GGGAC 1 cut(s) 1712
BslI CCNNNNNNNGG 2 cut(s) 863, 1321
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 1 cut(s) 1712
BsmI GAATGC 1 cut(s) 969
BsnI GGCC 1 cut(s) 372
Bso31I GGTCTC 1 cut(s) 987
BsoBI CYCGRG 1 cut(s) 990
Bsp119I TTCGAA 1 cut(s) 973
Bsp1407I TGTACA 1 cut(s) 1854
Bsp143I GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
Bsp19I CCATGG 1 cut(s) 1532
Bsp68I TCGCGA 1 cut(s) 1548
BspACI CCGC 3 cut(s) 960, 1881, 1893
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 1093, 1633
BspFNI CGCG 2 cut(s) 27, 1548
BspHI TCATGA 2 cut(s) 321, 1627
BspLI GGNNCC 4 cut(s) 44, 838, 949, 1091
BspMAI CTGCAG 3 cut(s) 463, 1050, 1653
BspMI ACCTGC 1 cut(s) 1323
BspOI GCTAGC 1 cut(s) 614
BspPI GGATC 4 cut(s) 16, 105, 1091, 1332
BspT104I TTCGAA 1 cut(s) 973
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 987
BsrDI GCAATG 2 cut(s) 895, 1641
BsrFI RCCGGY 3 cut(s) 45, 1761, 1895
BsrGI TGTACA 1 cut(s) 1854
BsrI ACTGG 6 cut(s) 314, 830, 1496, 1568, 1695, 1838
BssAI RCCGGY 3 cut(s) 45, 1761, 1895
BssECI CCNNGG 4 cut(s) 254, 1363, 1519, 1532
BssMI GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
BssT1I CCWWGG 2 cut(s) 1519, 1532
Bst2UI CCWGG 2 cut(s) 1364, 1474
Bst4CI ACNGT 2 cut(s) 405, 1859
Bst6I CTCTTC 1 cut(s) 1872
BstAUI TGTACA 1 cut(s) 1854
BstBI TTCGAA 1 cut(s) 973
BstC8I GCNNGC 4 cut(s) 612, 654, 895, 1050
BstDEI CTNAG 3 cut(s) 809, 1101, 1641
BstDSI CCRYGG 1 cut(s) 1532
BstEII GGTNACC 2 cut(s) 1028, 1358
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 2 cut(s) 27, 1548
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 7 cut(s) 11, 100, 1086, 1173, 1327, 1749, 1846
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
BstNI CCWGG 2 cut(s) 1364, 1474
BstNSI RCATGY 1 cut(s) 1810
BstPI GGTNACC 2 cut(s) 1028, 1358
BstSCI CCNGG 2 cut(s) 1362, 1472
BstSFI CTRYAG 4 cut(s) 459, 1046, 1129, 1649
BstUI CGCG 2 cut(s) 27, 1548
BstV2I GAAGAC 2 cut(s) 669, 1475
BstXI CCANNNNNNTGG 1 cut(s) 1040
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 1532
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 410
BtuMI TCGCGA 1 cut(s) 1548
BveI ACCTGC 1 cut(s) 1323
Cac8I GCNNGC 4 cut(s) 612, 654, 895, 1050
CciI TCATGA 2 cut(s) 321, 1627
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 3 cut(s) 45, 1761, 1895
CseI GACGC 1 cut(s) 663
Csp6I GTAC 4 cut(s) 71, 189, 208, 1855
CviAII CATG 8 cut(s) 322, 430, 695, 1389, 1414, 1533, 1628, 1807
CviQI GTAC 4 cut(s) 71, 189, 208, 1855
DdeI CTNAG 3 cut(s) 809, 1101, 1641
DpnI GATC 7 cut(s) 10, 99, 1085, 1172, 1326, 1748, 1845
DpnII GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
Eam1104I CTCTTC 1 cut(s) 1872
EarI CTCTTC 1 cut(s) 1872
Eco130I CCWWGG 2 cut(s) 1519, 1532
Eco31I GGTCTC 1 cut(s) 987
Eco32I GATATC 1 cut(s) 1216
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 990
Eco91I GGTNACC 2 cut(s) 1028, 1358
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoO65I GGTNACC 2 cut(s) 1028, 1358
EcoRI GAATTC 2 cut(s) 522, 1567
EcoRII CCWGG 2 cut(s) 1362, 1472
EcoRV GATATC 1 cut(s) 1216
EcoT14I CCWWGG 2 cut(s) 1519, 1532
EcoT22I ATGCAT 1 cut(s) 1114
ErhI CCWWGG 2 cut(s) 1519, 1532
FaeI CATG 8 cut(s) 325, 433, 698, 1392, 1417, 1536, 1631, 1810
FaqI GGGAC 1 cut(s) 1712
FatI CATG 8 cut(s) 321, 429, 694, 1388, 1413, 1532, 1627, 1806
FbaI TGATCA 1 cut(s) 1843
FblI GTMKAC 4 cut(s) 565, 879, 986, 1782
FokI GGATG 1 cut(s) 326
FspBI CTAG 7 cut(s) 39, 449, 611, 624, 636, 1407, 1520
GlaI GCGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 198, 1479
HaeIII GGCC 1 cut(s) 372
HapII CCGG 4 cut(s) 46, 1141, 1762, 1896
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 29
Hin1II CATG 8 cut(s) 325, 433, 698, 1392, 1417, 1536, 1631, 1810
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 92, 278, 409, 479, 1343, 1624
HpaII CCGG 4 cut(s) 46, 1141, 1762, 1896
HphI GGTGA 7 cut(s) 169, 706, 775, 1291, 1304, 1370, 1454
Hpy166II GTNNAC 8 cut(s) 223, 566, 845, 880, 987, 1043, 1783, 1855
Hpy188I TCNGA 6 cut(s) 97, 102, 277, 603, 863, 1573
Hpy8I GTNNAC 8 cut(s) 223, 566, 845, 880, 987, 1043, 1783, 1855
HpyAV CCTTC 7 cut(s) 245, 512, 863, 1520, 1675, 1698, 1795
HpyCH4III ACNGT 2 cut(s) 405, 1859
HpyCH4IV ACGT 1 cut(s) 219
HpyF3I CTNAG 3 cut(s) 809, 1101, 1641
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 8 cut(s) 325, 433, 698, 1392, 1417, 1536, 1631, 1810
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 1843
Kzo9I GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
LmnI GCTCC 3 cut(s) 831, 947, 1484
LweI GCATC 6 cut(s) 65, 1099, 1174, 1218, 1246, 1621
MaeI CTAG 7 cut(s) 39, 449, 611, 624, 636, 1407, 1520
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 6 cut(s) 196, 469, 712, 1028, 1358, 1559
MalI GATC 7 cut(s) 10, 99, 1085, 1172, 1326, 1748, 1845
MboI GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
MboII GAAGA 7 cut(s) 524, 527, 669, 1480, 1633, 1756, 1859
MfeI CAATTG 1 cut(s) 558
MlyI GAGTC 1 cut(s) 1352
MmeI TCCRAC 3 cut(s) 263, 581, 1886
Mph1103I ATGCAT 1 cut(s) 1114
MroXI GAANNNNTTC 2 cut(s) 107, 522
MseI TTAA 7 cut(s) 62, 306, 377, 588, 1269, 1332, 1424
MslI CAYNNNNRTG 5 cut(s) 326, 974, 1038, 1332, 1537
MspA1I CMGCKG 2 cut(s) 929, 1153
MspI CCGG 4 cut(s) 46, 1141, 1762, 1896
MspR9I CCNGG 2 cut(s) 1364, 1474
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 969
MvaI CCWGG 2 cut(s) 1364, 1474
MvnI CGCG 2 cut(s) 27, 1548
NcoI CCATGG 1 cut(s) 1532
NdeII GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
NheI GCTAGC 1 cut(s) 610
NlaIII CATG 8 cut(s) 325, 433, 698, 1392, 1417, 1536, 1631, 1810
NlaIV GGNNCC 4 cut(s) 44, 838, 949, 1091
NmeAIII GCCGAG 2 cut(s) 923, 1738
NmuCI GTSAC 2 cut(s) 712, 1358
NruI TCGCGA 1 cut(s) 1548
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 1 cut(s) 1810
NspV TTCGAA 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 990
PagI TCATGA 2 cut(s) 321, 1627
PaqCI CACCTGC 1 cut(s) 1323
PctI GAATGC 1 cut(s) 969
PdmI GAANNNNTTC 2 cut(s) 107, 522
PfeI GAWTC 5 cut(s) 92, 278, 409, 479, 1624
PleI GAGTC 1 cut(s) 1351
PpsI GAGTC 1 cut(s) 1351
PshBI ATTAAT 1 cut(s) 1332
Psp6I CCWGG 2 cut(s) 1362, 1472
PspEI GGTNACC 2 cut(s) 1028, 1358
PspGI CCWGG 2 cut(s) 1362, 1472
PspN4I GGNNCC 4 cut(s) 44, 838, 949, 1091
PstI CTGCAG 3 cut(s) 463, 1050, 1653
PvuII CAGCTG 2 cut(s) 929, 1153
RruI TCGCGA 1 cut(s) 1548
RsaI GTAC 4 cut(s) 72, 190, 209, 1856
RsaNI GTAC 4 cut(s) 71, 189, 208, 1855
RseI CAYNNNNRTG 5 cut(s) 326, 974, 1038, 1332, 1537
SaqAI TTAA 7 cut(s) 62, 306, 377, 588, 1269, 1332, 1424
Sau3AI GATC 7 cut(s) 8, 97, 1083, 1170, 1324, 1746, 1843
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 1 cut(s) 1352
ScrFI CCNGG 2 cut(s) 1364, 1474
SfaNI GCATC 6 cut(s) 65, 1099, 1174, 1218, 1246, 1621
SfcI CTRYAG 4 cut(s) 459, 1046, 1129, 1649
Sfr274I CTCGAG 1 cut(s) 990
SfuI TTCGAA 1 cut(s) 973
SgrAI CRCCGGYG 1 cut(s) 1895
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 5 cut(s) 326, 974, 1038, 1332, 1537
SmlI CTYRAG 2 cut(s) 990, 1202
SmoI CTYRAG 2 cut(s) 990, 1202
SsiI CCGC 3 cut(s) 960, 1881, 1893
SspMI CTAG 7 cut(s) 39, 449, 611, 624, 636, 1407, 1520
StyD4I CCNGG 2 cut(s) 1362, 1472
StyI CCWWGG 2 cut(s) 1519, 1532
TaaI ACNGT 2 cut(s) 405, 1859
TaiI ACGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 283, 973, 991, 1226, 1290
TatI WGTACW 3 cut(s) 70, 207, 1854
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 5 cut(s) 92, 278, 409, 479, 1624
Tru1I TTAA 7 cut(s) 62, 306, 377, 588, 1269, 1332, 1424
Tru9I TTAA 7 cut(s) 62, 306, 377, 588, 1269, 1332, 1424
TscAI CASTG 1 cut(s) 410
TseFI GTSAC 2 cut(s) 712, 1358
Tsp45I GTSAC 2 cut(s) 712, 1358
TspRI CASTG 1 cut(s) 410
VspI ATTAAT 1 cut(s) 1332
XagI CCTNNNNNAGG 1 cut(s) 861
XapI RAATTY 5 cut(s) 522, 1236, 1380, 1417, 1567
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 1 cut(s) 1810
XhoI CTCGAG 1 cut(s) 990
XmaJI CCTAGG 1 cut(s) 1519
XmiI GTMKAC 4 cut(s) 565, 879, 986, 1782
XmnI GAANNNNTTC 2 cut(s) 107, 522
XspI CTAG 7 cut(s) 39, 449, 611, 624, 636, 1407, 1520
ZrmI AGTACT 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.