Rh2DG309500

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
37948886 .. 37952898
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG309500.1

Sequence Viewer

Length: 1668 bp
ATGTCAAGTTTTGTAAACAGGTGGATATGGGGTGGATCGGATTCTCGATATGAATCAAATTTAGACATTAACTGGGATGATGTCATGAAAGTTTTGGGGAGGCTGACTGACAGGAGTGAATATCAAGGAATTGGCCTACTAAACTTCAACACAAGCGAAATCAACCAGTGGAATCAGATTGTTCCTGAAGCTGCCAATGTTGTTCTGCACTTGGACTATGCTGCAGAGAATGTAACTTGGGAATCTTTATATCCAGAATGGATAGATGAGGAGGAAGAAGATGGACTTCCAGTTTGCCCATCTCTGCCAAAGCTCAAAGCACTTGGCAGACGGCTTGACCTCATAGCTGTTAAACTTCCTTGTCGGAAAGAGCTACCGAATTGGTCTAGAGATGTTGCTCGGTTGCACCTGCAGCTTGCTGCTGCCGGTGTTGCTGCCTCTTCCAAAGGGTATCGCCATGTGCATTTGCTTTTCGTCACCGACTGCTTCCCTATTCCAAATCTGTTCAGATGCAAAGAGCTTGTGGTGCGCGAGGGGAATGCATGGTTATACGAGCCAAACCTCAATGTGCTTAGAGAAAAAGTGCAGCTCCCTGTAGGTTCCTGTGAACTTGCACTTCCTTTCAGAGGCAAAGGGCTGGTCTACTCTGGCAATGCGCGCCGAGAAGCGTATGCAACAATTCTCCATTCAGCTGATGTTTATGTTTGTGGAGCCATAGCTGCTGCACAAAGCATTCGAATGGCAGGGTCCACTCGAGACCTTGTGATACTTGTTGATGAAACCATTAGTGGTTACCATAGGAGCGGACTGCAGGCAGCAGGGTGGATAGTAAAGACAATAGAAAGGATCAGGAACCCGAAAGCTGAGAAAGATGCATACAATGAATGGAACTACAGCAAGTTCCGGTTGTGGCAGCTGACAGAATATGACAAGATCATTTTCATTGATGCTGATTTGCTTATACTCAAGAACATTGATATCTTATTCTCGATGCCAGAAATTTCTGCAACAGGGAATGATGCCACACTTTTTAACTCCGGGGTGATGGTTATCGAGCCTTCAAATTGCACATTCCACCTTCTTATGGATCACATTCATGAGATAGAGTCCTACAATGGTGGTGATCAGGGCTACTTGAATGAAATTTTCACATGGTGGCATAGAATACCCAGACACATGAATTTCTTAAAGCATTTTTGGGATGGTGATGAGGAAGAGATGAAACAGAAGAAGACCAGGCTTTTTGGAGCCAATCCTCCAATTCTTTATGTCCTTCACTACCTAGGAGTGAAGCCATGGTTGTGCTTTCGCGACTACGATTGTAACTGGAATTCTGATATATTTCAAGAGTTTGCAAGTGATGTTGCTCACGCAAGCTGGTGGAGAGTTCATGATGCAATGCCTGAGCTGCTGCAGCAGTTTTGTTTTTTGAGGACCAAGCAGAAGGCACAACTGGAATGGGACAGAAGGGAAGCCGAGAAAGCTAACTTCACAGATGGACATTGGAAGATCAAAATCAATGACCGGCGATTAAAAAGATGTGTAGACAATGTGTGTTCTTGGAAGGGCATGTTGAAGCATTGGGGAGAAACAAATTGGACTGATGATCAGATTGTGTACAATCCAACTCCACCTGCAATTACCGCAACTTCCATCACCGGTTTATGA

Protein Analysis

555

Amino Acids

64.1

Weight (kDa)

5.9

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 228 - 434 3.8e-13 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 417, 1642
Acc36I ACCTGC 2 cut(s) 417, 1642
AccBSI CCGCTC 1 cut(s) 804
AccI GTMKAC 2 cut(s) 642, 1545
AccII CGCG 3 cut(s) 531, 658, 1311
AciI CCGC 2 cut(s) 804, 1644
AclWI GGATC 3 cut(s) 43, 854, 1095
AcsI RAATTY 5 cut(s) 58, 999, 1143, 1180, 1330
AcuI CTGAAG 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 1155
AfaI GTAC 1 cut(s) 1619
AfiI CCNNNNNNNGG 2 cut(s) 626, 1084
AgeI ACCGGT 1 cut(s) 1658
AgsI TTSAA 5 cut(s) 148, 1062, 1138, 1346, 1576
AjnI CCWGG 1 cut(s) 1235
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 3 cut(s) 43, 854, 1095
Ama87I CYCGRG 1 cut(s) 753
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 5 cut(s) 58, 999, 1143, 1180, 1330
ArsI GACNNNNNNTTYG 4 cut(s) 276, 308, 624, 656
AsiGI ACCGGT 1 cut(s) 1658
AspA2I CCTAGG 1 cut(s) 1282
AspLEI GCGC 3 cut(s) 531, 658, 660
AspS9I GGNCC 2 cut(s) 747, 1434
AsuC2I CCSGG 1 cut(s) 1039
AsuHPI GGTGA 5 cut(s) 469, 1054, 1133, 1217, 1648
AsuII TTCGAA 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 2 cut(s) 747, 1434
AvrII CCTAGG 1 cut(s) 1282
BbsI GAAGAC 1 cut(s) 1238
BccI CCATC 6 cut(s) 275, 307, 1039, 1196, 1490, 1661
BceAI ACGGC 1 cut(s) 347
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 1237
BclI TGATCA 2 cut(s) 1123, 1606
BcnI CCSGG 1 cut(s) 1039
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 2 cut(s) 387, 1283
BfmI CTRYAG 6 cut(s) 222, 410, 594, 809, 892, 1412
BfuAI ACCTGC 2 cut(s) 417, 1642
BlnI CCTAGG 1 cut(s) 1282
Bme1390I CCNGG 2 cut(s) 1039, 1237
Bme18I GGWCC 2 cut(s) 747, 1434
BmeT110I CYCGRG 1 cut(s) 753
BmgT120I GGNCC 2 cut(s) 747, 1434
BmiI GGNNCC 5 cut(s) 601, 712, 748, 854, 1249
BmrFI CCNGG 2 cut(s) 1039, 1237
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 6 cut(s) 500, 862, 937, 981, 1009, 1384
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 1238
Bpu10I CCTNAGC 1 cut(s) 1404
Bpu14I TTCGAA 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 950
BpuMI CCSGG 1 cut(s) 1039
BsaBI GATNNNNATC 3 cut(s) 52, 1049, 1514
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 1038, 1282, 1295
BsaWI WCCGGW 2 cut(s) 903, 1658
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 1084
Bse118I RCCGGY 3 cut(s) 425, 1524, 1658
Bse1I ACTGG 5 cut(s) 77, 166, 290, 1331, 1458
Bse3DI GCAATG 2 cut(s) 658, 1404
Bse8I GATNNNNATC 3 cut(s) 52, 1049, 1514
BseBI CCWGG 1 cut(s) 1237
BseDI CCNNGG 3 cut(s) 1038, 1282, 1295
BseGI GGATG 2 cut(s) 82, 1207
BseJI GATNNNNATC 3 cut(s) 52, 1049, 1514
BseLI CCNNNNNNNGG 2 cut(s) 626, 1084
BseMI GCAATG 2 cut(s) 658, 1404
BseMII CTCAG 2 cut(s) 855, 1395
BseNI ACTGG 5 cut(s) 77, 166, 290, 1331, 1458
BsePI GCGCGC 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 284
BsgI GTGCAG 3 cut(s) 191, 605, 708
Bsh1236I CGCG 3 cut(s) 531, 658, 1311
BshFI GGCC 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 1658
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 5 cut(s) 426, 904, 1038, 1525, 1659
BslFI GGGAC 1 cut(s) 1475
BslI CCNNNNNNNGG 2 cut(s) 626, 1084
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 1475
BsmI GAATGC 2 cut(s) 544, 732
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 750
BsoBI CYCGRG 1 cut(s) 753
Bsp119I TTCGAA 1 cut(s) 736
Bsp1407I TGTACA 1 cut(s) 1617
Bsp143I GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
Bsp19I CCATGG 1 cut(s) 1295
Bsp68I TCGCGA 1 cut(s) 1311
BspACI CCGC 2 cut(s) 804, 1644
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 856, 1396
BspFNI CGCG 3 cut(s) 531, 658, 1311
BspHI TCATGA 3 cut(s) 84, 1096, 1390
BspLI GGNNCC 5 cut(s) 601, 712, 748, 854, 1249
BspMAI CTGCAG 4 cut(s) 226, 414, 813, 1416
BspMI ACCTGC 2 cut(s) 417, 1642
BspPI GGATC 3 cut(s) 43, 854, 1095
BspT104I TTCGAA 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 750
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 658, 1404
BsrFI RCCGGY 3 cut(s) 425, 1524, 1658
BsrGI TGTACA 1 cut(s) 1617
BsrI ACTGG 5 cut(s) 77, 166, 290, 1331, 1458
BssAI RCCGGY 3 cut(s) 425, 1524, 1658
BssECI CCNNGG 3 cut(s) 1038, 1282, 1295
BssHII GCGCGC 1 cut(s) 656
BssMI GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
BssT1I CCWWGG 2 cut(s) 1282, 1295
Bst2UI CCWGG 1 cut(s) 1237
Bst6I CTCTTC 2 cut(s) 445, 1209
BstAUI TGTACA 1 cut(s) 1617
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 4 cut(s) 417, 658, 813, 1375
BstDEI CTNAG 3 cut(s) 572, 864, 1404
BstDSI CCRYGG 1 cut(s) 1295
BstEII GGTNACC 1 cut(s) 791
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 82, 1207
BstFNI CGCG 3 cut(s) 531, 658, 1311
BstHHI GCGC 3 cut(s) 531, 658, 660
BstKTI GATC 7 cut(s) 38, 849, 936, 1090, 1126, 1512, 1609
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
BstMWI GCNNNNNNNGC 9 cut(s) 412, 431, 526, 657, 719, 1408, 1414, 1481, 1643
BstNI CCWGG 1 cut(s) 1237
BstNSI RCATGY 1 cut(s) 1573
BstPI GGTNACC 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 1037, 1235
BstSFI CTRYAG 6 cut(s) 222, 410, 594, 809, 892, 1412
BstUI CGCG 3 cut(s) 531, 658, 1311
BstV2I GAAGAC 1 cut(s) 1238
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 1295
BtsCI GGATG 2 cut(s) 82, 1207
BtsIMutI CAGTG 1 cut(s) 173
BtuMI TCGCGA 1 cut(s) 1311
BveI ACCTGC 2 cut(s) 417, 1642
Cac8I GCNNGC 4 cut(s) 417, 658, 813, 1375
CciI TCATGA 3 cut(s) 84, 1096, 1390
CfoI GCGC 3 cut(s) 531, 658, 660
Cfr10I RCCGGY 3 cut(s) 425, 1524, 1658
Cfr13I GGNCC 2 cut(s) 747, 1434
Csp6I GTAC 1 cut(s) 1618
CspAI ACCGGT 1 cut(s) 1658
CviAII CATG 9 cut(s) 85, 458, 543, 1097, 1152, 1177, 1296, 1391, 1570
CviQI GTAC 1 cut(s) 1618
DdeI CTNAG 3 cut(s) 572, 864, 1404
DpnI GATC 7 cut(s) 37, 848, 935, 1089, 1125, 1511, 1608
DpnII GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
DraIII CACNNNGTG 1 cut(s) 1155
Eam1104I CTCTTC 2 cut(s) 445, 1209
EarI CTCTTC 2 cut(s) 445, 1209
Eco130I CCWWGG 2 cut(s) 1282, 1295
Eco31I GGTCTC 1 cut(s) 750
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 2 cut(s) 747, 1434
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 791
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO65I GGTNACC 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 1330
EcoRII CCWGG 1 cut(s) 1235
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 2 cut(s) 1282, 1295
EcoT22I ATGCAT 2 cut(s) 544, 877
ErhI CCWWGG 2 cut(s) 1282, 1295
FaeI CATG 9 cut(s) 88, 461, 546, 1100, 1155, 1180, 1299, 1394, 1573
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 1475
FatI CATG 9 cut(s) 84, 457, 542, 1096, 1151, 1176, 1295, 1390, 1569
FbaI TGATCA 2 cut(s) 1123, 1606
FblI GTMKAC 2 cut(s) 642, 1545
FokI GGATG 2 cut(s) 89, 1214
FspBI CTAG 2 cut(s) 387, 1283
GlaI GCGC 3 cut(s) 530, 657, 659
HaeIII GGCC 1 cut(s) 135
HapII CCGG 5 cut(s) 426, 904, 1038, 1525, 1659
HhaI GCGC 3 cut(s) 531, 658, 660
Hin1II CATG 9 cut(s) 88, 461, 546, 1100, 1155, 1180, 1299, 1394, 1573
Hin6I GCGC 3 cut(s) 529, 656, 658
HinP1I GCGC 3 cut(s) 529, 656, 658
HinfI GANTC 5 cut(s) 41, 53, 172, 242, 1106
HpaII CCGG 5 cut(s) 426, 904, 1038, 1525, 1659
HphI GGTGA 5 cut(s) 469, 1054, 1133, 1217, 1648
Hpy166II GTNNAC 6 cut(s) 16, 608, 643, 750, 1546, 1618
Hpy188I TCNGA 7 cut(s) 40, 177, 366, 509, 626, 1336, 1611
Hpy8I GTNNAC 6 cut(s) 16, 608, 643, 750, 1546, 1618
HpyAV CCTTC 6 cut(s) 1068, 1088, 1283, 1438, 1461, 1558
HpyF10VI GCNNNNNNNGC 9 cut(s) 412, 431, 526, 657, 719, 1408, 1414, 1481, 1643
HpyF3I CTNAG 3 cut(s) 572, 864, 1404
Hsp92II CATG 9 cut(s) 88, 461, 546, 1100, 1155, 1180, 1299, 1394, 1573
HspAI GCGC 3 cut(s) 529, 656, 658
Ksp22I TGATCA 2 cut(s) 1123, 1606
Kzo9I GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
LmnI GCTCC 4 cut(s) 594, 710, 801, 1247
LweI GCATC 6 cut(s) 500, 862, 937, 981, 1009, 1384
MaeI CTAG 2 cut(s) 387, 1283
MaeIII GTNAC 4 cut(s) 232, 475, 791, 1322
MalI GATC 7 cut(s) 37, 848, 935, 1089, 1125, 1511, 1608
MbiI CCGCTC 1 cut(s) 804
MboI GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
MboII GAAGA 7 cut(s) 287, 290, 432, 1226, 1240, 1243, 1519
MlyI GAGTC 1 cut(s) 1115
MmeI TCCRAC 2 cut(s) 344, 1649
Mph1103I ATGCAT 2 cut(s) 544, 877
MseI TTAA 5 cut(s) 69, 351, 1032, 1187, 1532
MslI CAYNNNNRTG 3 cut(s) 737, 1095, 1300
MspA1I CMGCKG 2 cut(s) 692, 916
MspI CCGG 5 cut(s) 426, 904, 1038, 1525, 1659
MspR9I CCNGG 2 cut(s) 1039, 1237
Mva1269I GAATGC 2 cut(s) 544, 732
MvaI CCWGG 1 cut(s) 1237
MvnI CGCG 3 cut(s) 531, 658, 1311
MwoI GCNNNNNNNGC 9 cut(s) 412, 431, 526, 657, 719, 1408, 1414, 1481, 1643
NciI CCSGG 1 cut(s) 1039
NcoI CCATGG 1 cut(s) 1295
NdeII GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
NlaIII CATG 9 cut(s) 88, 461, 546, 1100, 1155, 1180, 1299, 1394, 1573
NlaIV GGNNCC 5 cut(s) 601, 712, 748, 854, 1249
NmeAIII GCCGAG 2 cut(s) 686, 1501
NmuCI GTSAC 1 cut(s) 475
NruI TCGCGA 1 cut(s) 1311
NsiI ATGCAT 2 cut(s) 544, 877
NspI RCATGY 1 cut(s) 1573
NspV TTCGAA 1 cut(s) 736
PaeR7I CTCGAG 1 cut(s) 753
PagI TCATGA 3 cut(s) 84, 1096, 1390
PaqCI CACCTGC 2 cut(s) 417, 1642
PauI GCGCGC 1 cut(s) 656
PctI GAATGC 2 cut(s) 544, 732
PfeI GAWTC 4 cut(s) 41, 53, 172, 242
PinAI ACCGGT 1 cut(s) 1658
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
Psp6I CCWGG 1 cut(s) 1235
PspEI GGTNACC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 1235
PspN4I GGNNCC 5 cut(s) 601, 712, 748, 854, 1249
PspPI GGNCC 2 cut(s) 747, 1434
PstI CTGCAG 4 cut(s) 226, 414, 813, 1416
PteI GCGCGC 1 cut(s) 656
PvuII CAGCTG 2 cut(s) 692, 916
RruI TCGCGA 1 cut(s) 1311
RsaI GTAC 1 cut(s) 1619
RsaNI GTAC 1 cut(s) 1618
RseI CAYNNNNRTG 3 cut(s) 737, 1095, 1300
SaqAI TTAA 5 cut(s) 69, 351, 1032, 1187, 1532
Sau3AI GATC 7 cut(s) 35, 846, 933, 1087, 1123, 1509, 1606
Sau96I GGNCC 2 cut(s) 747, 1434
SchI GAGTC 1 cut(s) 1115
ScrFI CCNGG 2 cut(s) 1039, 1237
SfaNI GCATC 6 cut(s) 500, 862, 937, 981, 1009, 1384
SfcI CTRYAG 6 cut(s) 222, 410, 594, 809, 892, 1412
Sfr274I CTCGAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 736
SinI GGWCC 2 cut(s) 747, 1434
SlaI CTCGAG 1 cut(s) 753
SmiMI CAYNNNNRTG 3 cut(s) 737, 1095, 1300
SmlI CTYRAG 2 cut(s) 753, 965
SmoI CTYRAG 2 cut(s) 753, 965
SsiI CCGC 2 cut(s) 804, 1644
SspMI CTAG 2 cut(s) 387, 1283
StyD4I CCNGG 2 cut(s) 1037, 1235
StyI CCWWGG 2 cut(s) 1282, 1295
TaqI TCGA 5 cut(s) 46, 736, 754, 989, 1053
TatI WGTACW 1 cut(s) 1617
TfiI GAWTC 4 cut(s) 41, 53, 172, 242
Tru1I TTAA 5 cut(s) 69, 351, 1032, 1187, 1532
Tru9I TTAA 5 cut(s) 69, 351, 1032, 1187, 1532
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 475
TspRI CASTG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 747, 1434
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 5 cut(s) 58, 999, 1143, 1180, 1330
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 1 cut(s) 1573
XhoI CTCGAG 1 cut(s) 753
XmaJI CCTAGG 1 cut(s) 1282
XmiI GTMKAC 2 cut(s) 642, 1545
XspI CTAG 2 cut(s) 387, 1283
Zsp2I ATGCAT 2 cut(s) 544, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.