RLG00000018545

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
31631910 .. 31634836
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018545

Sequence Viewer

Length: 1908 bp
ATGGGTACTTCCCCACGCGCCGTTGAAGCTAGGCATCGGCTATCTGCATCATTTGAAGATATATACAGAAGAAGAGTACAGAAAAGTAAAGCAAACGATTCAGAGAAGCCTTTCCACTTATCCATCCAAGATAGAAGTTCAAGATACAAGCTTCCTCTGCTGAGACTTGTCCTGCTAATCGCCATATGTGGTACTTTTGTAGTGCTTCTTTACTCTCCAGAAGTTTACAACAATAACCTTCCAACACATTCTGTTCCTCGGTGGATATGGGGTGGATCGGATTCTCGATATGAATCAAATTTAGACATTAACTGGGATGATGTCATGAAAGTTTTAGGGAGGCTGACTGACAGGAATGAATATCAAGGAATCGGCCTACTAAACTTCAACACAAGCGAAATCAACCAGTGGAATCAGATTGTTCCTGAAGCTGCCAATGTTGTTCTGCACTTGGACTATGCTGCAGAGAATGTAACTTGGGAATCTTTATATCCAGAATGGATAGATGAGGAGGAAGAAGATGGACTTCCAGTTTGCCCATCTCTGCCAAAGCTCAAAGCACTTGGCAGACGGCTTGACCTCATAGCTGTTAAACTTCCTTGTCGGAAAGAGCTACCGAATTGGTCTAGAGATGTTGCTCGGTTGCACCTGCAGCTTGCTGCTGCTGGTGTTGCTGCCTCTTCCAAAGGGTATCGCCATGTGCATTTGCTTTTCGTCACCGACTGCTTCCCTATTCCAAATCTGTTCAGATGCAAAGAGCTTGTGGAGCGCGAGGGGAATGCATGGTTATACAAGCCAAACCTCAATGTGCTAAGAGAAAAAGTGCAGCTCCCTGTAGGTTCCTGTGAACTTGCACTTCCTTTCAGAGGCAAAGGGCTGGTCTACTCTGGCAATGCGCGCCGAGAAGCGTATGCAACAATTCTCCATTCAGCTGATGTTTATGTTTGTGGAGCCATAGCTGCTGCACAAAGCATTCGAATGGCAGGGTCCACTCGAGACCTTGTGATACTTGTTGATGAAACCATTAGTGGTTACCATAGGAGCGGACTGCAGGCAGCAGGGTGGATAGTAAGGACAATAGAAAGGATCAGGAACCCGAAAGCTGAGAAAGATGCATACAATGAATGGAACTACAGCAAGTTCCGGTTGTGGCAGCTGACAGAATATGACAAGATCATTTTCATTGATGCTGATTTGCTTATACTCAAGAACATTGATATCTTATTTTCGATGCCGGAAATTTCTGCAACAGGGAATGATGCCACACTTTTTAACTCCGGGGTGATGGTTATCGAGCCTTCAAATTGCACATTCCACCTTCTTATGGATCACATTCATGAGATAGAGTCCTACAATGGTGGTGATCAGGGCTACTTGAATGAAATTTTCACATGGTGGCATAGAATACCTAGACACATGAATTTCTTAAAGCATTTTTGGGATGGTGATGAGGAAGAGATGAAACAGAAGAAGACCAGGCTTTTTGGAGCCAATCCTCCAATTCTTTACGTCCTTCACTACCTCGGAGTGAAGCCATGGTTGTGCTTTCGCGACTACGATTGTAACTGGAATTCTGATATATTTCAAGAGTTTGCAAGTGATGTTGCTCATGCAAGTTGGTGGAGAGTTCATGATGCAATGCCTGAGCTGCTGCAGCAGTTTTGTTTTTTGAGGACAAAGCAGAAGGCACAACTGGAATGGGACAGAAGGGAAGCCGAGAAAGCTAACTTCACAGATGGACATTGGAAGATCAACATCAAAGACCGGCGATTAAAAAGATGTGTAGACAATGTGTGTTCTTGGAAGGGCATGTTGAAGCACTGGGGAGAAACAAATTGGACTGATGATCAGATTGTGTACACTCCAACTCCACCTGCAATTACCACAACTTCCATCACCGGTTTATGA

Protein Analysis

636

Amino Acids

73.39

Weight (kDa)

6.59

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 308 - 514 5e-13 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 657, 1882
Acc36I ACCTGC 2 cut(s) 657, 1882
AccBSI CCGCTC 1 cut(s) 1044
AccI GTMKAC 2 cut(s) 882, 1785
AccII CGCG 4 cut(s) 18, 771, 898, 1551
AciI CCGC 1 cut(s) 1044
AclWI GGATC 3 cut(s) 283, 1094, 1335
AcsI RAATTY 5 cut(s) 298, 1239, 1383, 1420, 1570
AcuI CTGAAG 1 cut(s) 447
AdeI CACNNNGTG 1 cut(s) 1395
AfaI GTAC 4 cut(s) 7, 78, 193, 1859
AfiI CCNNNNNNNGG 2 cut(s) 866, 1324
AgeI ACCGGT 1 cut(s) 1898
AgsI TTSAA 8 cut(s) 26, 56, 141, 388, 1302, 1378, 1586, 1816
AjnI CCWGG 1 cut(s) 1475
Alw26I GTCTC 2 cut(s) 157, 990
AlwI GGATC 3 cut(s) 283, 1094, 1335
Ama87I CYCGRG 1 cut(s) 993
AoxI GGCC 1 cut(s) 373
ApoI RAATTY 5 cut(s) 298, 1239, 1383, 1420, 1570
ArsI GACNNNNNNTTYG 4 cut(s) 516, 548, 864, 896
AsiGI ACCGGT 1 cut(s) 1898
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 4 cut(s) 20, 771, 898, 900
AspS9I GGNCC 1 cut(s) 987
AsuC2I CCSGG 1 cut(s) 1279
AsuHPI GGTGA 5 cut(s) 709, 1294, 1373, 1457, 1888
AsuII TTCGAA 1 cut(s) 976
AvaI CYCGRG 1 cut(s) 993
AvaII GGWCC 1 cut(s) 987
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BbsI GAAGAC 1 cut(s) 1478
BccI CCATC 7 cut(s) 131, 515, 547, 1279, 1436, 1730, 1901
BceAI ACGGC 2 cut(s) 5, 587
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 1477
BclI TGATCA 2 cut(s) 1363, 1846
BcnI CCSGG 1 cut(s) 1279
BcoDI GTCTC 2 cut(s) 157, 990
BfaI CTAG 3 cut(s) 30, 627, 1410
BfmI CTRYAG 6 cut(s) 462, 650, 834, 1049, 1132, 1652
BfuAI ACCTGC 2 cut(s) 657, 1882
Bme1390I CCNGG 2 cut(s) 1279, 1477
Bme18I GGWCC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 993
BmgT120I GGNCC 1 cut(s) 987
BmiI GGNNCC 5 cut(s) 841, 952, 988, 1094, 1489
BmrFI CCNGG 2 cut(s) 1279, 1477
BmrI ACTGGG 2 cut(s) 322, 1831
BmsI GCATC 8 cut(s) 43, 56, 740, 1102, 1177, 1221, 1249, 1624
BmuI ACTGGG 2 cut(s) 322, 1831
BpiI GAAGAC 1 cut(s) 1478
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 1644
Bpu14I TTCGAA 1 cut(s) 976
BpuEI CTTGAG 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 1279
BsaBI GATNNNNATC 3 cut(s) 292, 1289, 1754
BsaI GGTCTC 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 257, 1278, 1522, 1535
BsaWI WCCGGW 2 cut(s) 1143, 1898
BsaXI ACNNNNNCTCC 2 cut(s) 1852, 1882
Bsc4I CCNNNNNNNGG 2 cut(s) 866, 1324
Bse118I RCCGGY 2 cut(s) 1764, 1898
Bse1I ACTGG 6 cut(s) 317, 406, 530, 1571, 1698, 1826
Bse3DI GCAATG 2 cut(s) 898, 1644
Bse8I GATNNNNATC 3 cut(s) 292, 1289, 1754
BseBI CCWGG 1 cut(s) 1477
BseDI CCNNGG 4 cut(s) 257, 1278, 1522, 1535
BseGI GGATG 3 cut(s) 123, 322, 1447
BseJI GATNNNNATC 3 cut(s) 292, 1289, 1754
BseLI CCNNNNNNNGG 2 cut(s) 866, 1324
BseMI GCAATG 2 cut(s) 898, 1644
BseMII CTCAG 3 cut(s) 152, 1095, 1635
BseNI ACTGG 6 cut(s) 317, 406, 530, 1571, 1698, 1826
BsePI GCGCGC 1 cut(s) 896
BseRI GAGGAG 1 cut(s) 524
BsgI GTGCAG 3 cut(s) 431, 845, 948
Bsh1236I CGCG 4 cut(s) 18, 771, 898, 1551
BshFI GGCC 1 cut(s) 375
BshTI ACCGGT 1 cut(s) 1898
BsiHKCI CYCGRG 1 cut(s) 993
BsiSI CCGG 5 cut(s) 1144, 1235, 1278, 1765, 1899
BslFI GGGAC 1 cut(s) 1715
BslI CCNNNNNNNGG 2 cut(s) 866, 1324
BsmAI GTCTC 2 cut(s) 157, 990
BsmFI GGGAC 1 cut(s) 1715
BsmI GAATGC 2 cut(s) 784, 972
BsnI GGCC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 990
BsoBI CYCGRG 1 cut(s) 993
Bsp119I TTCGAA 1 cut(s) 976
Bsp1407I TGTACA 1 cut(s) 1857
Bsp143I GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
Bsp19I CCATGG 1 cut(s) 1535
Bsp68I TCGCGA 1 cut(s) 1551
BspACI CCGC 1 cut(s) 1044
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 3 cut(s) 153, 1096, 1636
BspFNI CGCG 4 cut(s) 18, 771, 898, 1551
BspHI TCATGA 3 cut(s) 324, 1336, 1630
BspLI GGNNCC 5 cut(s) 841, 952, 988, 1094, 1489
BspMAI CTGCAG 4 cut(s) 466, 654, 1053, 1656
BspMI ACCTGC 2 cut(s) 657, 1882
BspPI GGATC 3 cut(s) 283, 1094, 1335
BspT104I TTCGAA 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 990
BsrBI CCGCTC 1 cut(s) 1044
BsrDI GCAATG 2 cut(s) 898, 1644
BsrFI RCCGGY 2 cut(s) 1764, 1898
BsrGI TGTACA 1 cut(s) 1857
BsrI ACTGG 6 cut(s) 317, 406, 530, 1571, 1698, 1826
BssAI RCCGGY 2 cut(s) 1764, 1898
BssECI CCNNGG 4 cut(s) 257, 1278, 1522, 1535
BssHII GCGCGC 1 cut(s) 896
BssMI GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
BssT1I CCWWGG 1 cut(s) 1535
Bst2UI CCWGG 1 cut(s) 1477
Bst6I CTCTTC 3 cut(s) 67, 685, 1449
BstAUI TGTACA 1 cut(s) 1857
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 3 cut(s) 657, 898, 1053
BstDEI CTNAG 4 cut(s) 161, 812, 1104, 1644
BstDSI CCRYGG 1 cut(s) 1535
BstEII GGTNACC 1 cut(s) 1031
BstENI CCTNNNNNAGG 1 cut(s) 864
BstF5I GGATG 3 cut(s) 123, 322, 1447
BstFNI CGCG 4 cut(s) 18, 771, 898, 1551
BstHHI GCGC 4 cut(s) 20, 771, 898, 900
BstKTI GATC 7 cut(s) 278, 1089, 1176, 1330, 1366, 1752, 1849
BstMAI GTCTC 2 cut(s) 157, 990
BstMBI GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
BstNI CCWGG 1 cut(s) 1477
BstNSI RCATGY 1 cut(s) 1813
BstPI GGTNACC 1 cut(s) 1031
BstSCI CCNGG 2 cut(s) 1277, 1475
BstSFI CTRYAG 6 cut(s) 462, 650, 834, 1049, 1132, 1652
BstUI CGCG 4 cut(s) 18, 771, 898, 1551
BstV2I GAAGAC 1 cut(s) 1478
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 1535
BtsCI GGATG 3 cut(s) 123, 322, 1447
BtsIMutI CAGTG 2 cut(s) 413, 1819
BtuMI TCGCGA 1 cut(s) 1551
BveI ACCTGC 2 cut(s) 657, 1882
Cac8I GCNNGC 3 cut(s) 657, 898, 1053
CciI TCATGA 3 cut(s) 324, 1336, 1630
CfoI GCGC 4 cut(s) 20, 771, 898, 900
Cfr10I RCCGGY 2 cut(s) 1764, 1898
Cfr13I GGNCC 1 cut(s) 987
Csp6I GTAC 4 cut(s) 6, 77, 192, 1858
CspAI ACCGGT 1 cut(s) 1898
CviQI GTAC 4 cut(s) 6, 77, 192, 1858
DdeI CTNAG 4 cut(s) 161, 812, 1104, 1644
DpnI GATC 7 cut(s) 277, 1088, 1175, 1329, 1365, 1751, 1848
DpnII GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
DraIII CACNNNGTG 1 cut(s) 1395
Eam1104I CTCTTC 3 cut(s) 67, 685, 1449
EarI CTCTTC 3 cut(s) 67, 685, 1449
Eco130I CCWWGG 1 cut(s) 1535
Eco31I GGTCTC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 1219
Eco47I GGWCC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 993
Eco91I GGTNACC 1 cut(s) 1031
EcoNI CCTNNNNNAGG 1 cut(s) 864
EcoO65I GGTNACC 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 1570
EcoRII CCWGG 1 cut(s) 1475
EcoRV GATATC 1 cut(s) 1219
EcoT14I CCWWGG 1 cut(s) 1535
EcoT22I ATGCAT 2 cut(s) 784, 1117
ErhI CCWWGG 1 cut(s) 1535
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 1715
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 2 cut(s) 1363, 1846
FblI GTMKAC 2 cut(s) 882, 1785
FokI GGATG 3 cut(s) 110, 329, 1454
FspBI CTAG 3 cut(s) 30, 627, 1410
GlaI GCGC 4 cut(s) 19, 770, 897, 899
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 375
HapII CCGG 5 cut(s) 1144, 1235, 1278, 1765, 1899
HhaI GCGC 4 cut(s) 20, 771, 898, 900
Hin6I GCGC 4 cut(s) 18, 769, 896, 898
HinP1I GCGC 4 cut(s) 18, 769, 896, 898
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 7 cut(s) 98, 281, 293, 369, 412, 482, 1346
HpaII CCGG 5 cut(s) 1144, 1235, 1278, 1765, 1899
HphI GGTGA 5 cut(s) 709, 1294, 1373, 1457, 1888
Hpy166II GTNNAC 7 cut(s) 226, 848, 883, 990, 1786, 1858, 1860
Hpy188I TCNGA 9 cut(s) 103, 280, 417, 606, 749, 866, 1526, 1576, 1851
Hpy8I GTNNAC 7 cut(s) 226, 848, 883, 990, 1786, 1858, 1860
HpyAV CCTTC 7 cut(s) 248, 1308, 1328, 1523, 1678, 1701, 1798
HpyCH4IV ACGT 1 cut(s) 1509
HpyF3I CTNAG 4 cut(s) 161, 812, 1104, 1644
HpySE526I ACGT 1 cut(s) 1509
HspAI GCGC 4 cut(s) 18, 769, 896, 898
Ksp22I TGATCA 2 cut(s) 1363, 1846
Kzo9I GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
LmnI GCTCC 5 cut(s) 766, 834, 950, 1041, 1487
LweI GCATC 8 cut(s) 43, 56, 740, 1102, 1177, 1221, 1249, 1624
MaeI CTAG 3 cut(s) 30, 627, 1410
MaeII ACGT 1 cut(s) 1509
MaeIII GTNAC 4 cut(s) 472, 715, 1031, 1562
MalI GATC 7 cut(s) 277, 1088, 1175, 1329, 1365, 1751, 1848
MbiI CCGCTC 1 cut(s) 1044
MboI GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
MlyI GAGTC 1 cut(s) 1355
MmeI TCCRAC 3 cut(s) 266, 584, 1889
Mph1103I ATGCAT 2 cut(s) 784, 1117
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 5 cut(s) 309, 591, 1272, 1427, 1772
MslI CAYNNNNRTG 3 cut(s) 977, 1335, 1540
MspA1I CMGCKG 2 cut(s) 932, 1156
MspI CCGG 5 cut(s) 1144, 1235, 1278, 1765, 1899
MspR9I CCNGG 2 cut(s) 1279, 1477
Mva1269I GAATGC 2 cut(s) 784, 972
MvaI CCWGG 1 cut(s) 1477
MvnI CGCG 4 cut(s) 18, 771, 898, 1551
NciI CCSGG 1 cut(s) 1279
NcoI CCATGG 1 cut(s) 1535
NdeI CATATG 1 cut(s) 185
NdeII GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
NlaIV GGNNCC 5 cut(s) 841, 952, 988, 1094, 1489
NmeAIII GCCGAG 2 cut(s) 926, 1741
NmuCI GTSAC 1 cut(s) 715
NruI TCGCGA 1 cut(s) 1551
NsiI ATGCAT 2 cut(s) 784, 1117
NspI RCATGY 1 cut(s) 1813
NspV TTCGAA 1 cut(s) 976
PaeR7I CTCGAG 1 cut(s) 993
PagI TCATGA 3 cut(s) 324, 1336, 1630
PaqCI CACCTGC 2 cut(s) 657, 1882
PauI GCGCGC 1 cut(s) 896
PctI GAATGC 2 cut(s) 784, 972
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 6 cut(s) 98, 281, 293, 369, 412, 482
PinAI ACCGGT 1 cut(s) 1898
PleI GAGTC 1 cut(s) 1354
PpsI GAGTC 1 cut(s) 1354
Psp6I CCWGG 1 cut(s) 1475
PspEI GGTNACC 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 1475
PspN4I GGNNCC 5 cut(s) 841, 952, 988, 1094, 1489
PspPI GGNCC 1 cut(s) 987
PstI CTGCAG 4 cut(s) 466, 654, 1053, 1656
PteI GCGCGC 1 cut(s) 896
PvuII CAGCTG 2 cut(s) 932, 1156
RruI TCGCGA 1 cut(s) 1551
RsaI GTAC 4 cut(s) 7, 78, 193, 1859
RsaNI GTAC 4 cut(s) 6, 77, 192, 1858
RseI CAYNNNNRTG 3 cut(s) 977, 1335, 1540
SaqAI TTAA 5 cut(s) 309, 591, 1272, 1427, 1772
Sau3AI GATC 7 cut(s) 275, 1086, 1173, 1327, 1363, 1749, 1846
Sau96I GGNCC 1 cut(s) 987
SchI GAGTC 1 cut(s) 1355
ScrFI CCNGG 2 cut(s) 1279, 1477
SfaNI GCATC 8 cut(s) 43, 56, 740, 1102, 1177, 1221, 1249, 1624
SfcI CTRYAG 6 cut(s) 462, 650, 834, 1049, 1132, 1652
Sfr274I CTCGAG 1 cut(s) 993
SfuI TTCGAA 1 cut(s) 976
SinI GGWCC 1 cut(s) 987
SlaI CTCGAG 1 cut(s) 993
SmiMI CAYNNNNRTG 3 cut(s) 977, 1335, 1540
SmlI CTYRAG 2 cut(s) 993, 1205
SmoI CTYRAG 2 cut(s) 993, 1205
SsiI CCGC 1 cut(s) 1044
SspMI CTAG 3 cut(s) 30, 627, 1410
StyD4I CCNGG 2 cut(s) 1277, 1475
StyI CCWWGG 1 cut(s) 1535
TaiI ACGT 1 cut(s) 1512
TaqI TCGA 5 cut(s) 286, 976, 994, 1229, 1293
TatI WGTACW 2 cut(s) 76, 1857
TfiI GAWTC 6 cut(s) 98, 281, 293, 369, 412, 482
Tru1I TTAA 5 cut(s) 309, 591, 1272, 1427, 1772
Tru9I TTAA 5 cut(s) 309, 591, 1272, 1427, 1772
TscAI CASTG 2 cut(s) 413, 1826
TseFI GTSAC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 715
TspRI CASTG 2 cut(s) 413, 1826
VpaK11BI GGWCC 1 cut(s) 987
XagI CCTNNNNNAGG 1 cut(s) 864
XapI RAATTY 5 cut(s) 298, 1239, 1383, 1420, 1570
XbaI TCTAGA 1 cut(s) 626
XceI RCATGY 1 cut(s) 1813
XhoI CTCGAG 1 cut(s) 993
XmiI GTMKAC 2 cut(s) 882, 1785
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 3 cut(s) 30, 627, 1410
Zsp2I ATGCAT 2 cut(s) 784, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.