Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014065

Physical Location & Seq

Genomic Coordinates Forward (+)

22504957 .. 22505322

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTGATATCATAGCTAGTCTCACTGCCGCATTCCAACTATCGGACTCAGCCCGCGTCAATTTTGGTGCAAGAGAAGCGGCAGCTCTGCAAGACAACCATTCATATCTTGTGGGTCGTCTTCTTGACCCAAAATCCAAATTTCCTGAATTCAAAAGTACTATTGCAACAATTTGGAGGGTGAAATCGAAGCTTTCTATTTATGATGTGGGAGACAGGTATGTTTTCCAATTCGTAAGGGAATCGAAGAGAAATCGGATCTTTCATGGAGGTCCATGGTATTACAAGAAACACAATGGTGGTTTTGGGGAATACGATGGGGTTGGTGTTGTGGATGCTGTCCCTCTGAGATTGATGGAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0008194 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0046527 GO:0055114 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

9.43

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	31 - 98	1e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18660 AT3G18660 AT3G18660
fragaria_vesca	FvH4_1g24050
rosa_chinensis	RchiOBHm_Chr2g0120261
rosa_laevigata	RLG00000018545
rosa_multiflora	Rmu_sc0004523.1_g000013 Rmu_sc0005172.1_g000008
rosa_roxburghii	Rroxscaffold_2G00123590
rosa_rugosa	Rorug02G0227800 Rorug02G0227900 Rorug02G0228000
rosa_samantha	Rh2AG284500 Rh2BG295500 Rh2CG273000 Rh2DG309500
rosa_wichuraiana	Rw2G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	30, 55, 80
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	140, 149
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	154
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	17, 86, 193
AluI	AGCT	3 cut(s)	17, 86, 193
Alw26I	GTCTC	3 cut(s)	26, 207, 353
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	140, 149
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	311, 349
BcoDI	GTCTC	3 cut(s)	26, 207, 353
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	3 cut(s)	30, 81, 84
BlsI	GCNGC	3 cut(s)	31, 82, 85
BmcAI	AGTACT	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	63, 338
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	3 cut(s)	26, 207, 353
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	3 cut(s)	30, 55, 80
BspCNI	CTCAG	2 cut(s)	62, 339
BspFNI	CGCG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	49, 347, 363
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	3 cut(s)	26, 207, 353
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	266, 276
CviJI	RGCY	5 cut(s)	5, 17, 53, 86, 193
CviKI_1	RGCY	5 cut(s)	5, 17, 53, 86, 193
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	3 cut(s)	49, 347, 363
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	269, 279
FaiI	YATR	6 cut(s)	14, 106, 204, 222, 267, 277
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	265, 275
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	30, 81, 84
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	30, 81, 84
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	30, 81, 84
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	269, 279
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	47, 242
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	46, 258, 348
Hpy188III	TCNNGA	2 cut(s)	125, 146
HpyCH4V	TGCA	3 cut(s)	71, 91, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	49, 347, 363
Hsp92II	CATG	2 cut(s)	269, 279
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	2 cut(s)	159, 202
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	18
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	113, 259
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	5 cut(s)	61, 140, 149, 171, 230
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	171, 263, 354
MslI	CAYNNNNRTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	32
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	269, 279
OliI	CACNNNNGTG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	31, 82, 85
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	3 cut(s)	30, 81, 84
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	41
SetI	ASST	5 cut(s)	19, 88, 195, 221, 274
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	5 cut(s)	61, 140, 149, 171, 230
SsiI	CCGC	3 cut(s)	30, 55, 80
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	275
TaqI	TCGA	2 cut(s)	188, 245
TasI	AATT	5 cut(s)	61, 140, 149, 171, 230
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	2 cut(s)	32, 83
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	93, 254
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	140, 149
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.